RLG00000011466

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
9632833 .. 9633928
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011466

Sequence Viewer

Length: 1011 bp
ATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAACTGCGACACAAAGATCCACGCAGCCAACAAGCTGGCTTCCCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCCCCTGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCAAGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTGGCCCCGTTCTACGACTCACTCAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTCGATGACCGATACTTGTCCGACGGAGACGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCCAAGGATCTGAATTCGGGGCAGTACGTGTTCTCTGACATGGATCCGTATTTGGATCTGGATAATTACGGGGCAGTGGATCCGAAAGCTCAAGCCCAAGCTCAAGCTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAACCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGCGTATCATCATCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAGATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGACATCGAAGCCGAACGTATCTGCCGCTACGGCGTCGTTCCCACTTTTTAG

Protein Analysis

337

Amino Acids

37.18

Weight (kDa)

5.58

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 42 3.4e-07 B-box zinc finger
zf-B_box PF00643 46 - 91 8.1e-07 B-box zinc finger
CCT PF06203 275 - 317 5.1e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 587, 751
Acc36I ACCTGC 1 cut(s) 927
AccII CGCG 1 cut(s) 898
AciI CCGC 9 cut(s) 66, 124, 250, 312, 800, 818, 911, 959, 985
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 1 cut(s) 457
AcvI CACGTG 1 cut(s) 180
AcyI GRCGYC 2 cut(s) 195, 993
AfaI GTAC 3 cut(s) 470, 577, 845
AfiI CCNNNNNNNGG 2 cut(s) 133, 138
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 1 cut(s) 629
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 7 cut(s) 13, 115, 533, 545, 551, 830, 905
AluI AGCT 7 cut(s) 13, 115, 533, 545, 551, 830, 905
Alw26I GTCTC 6 cut(s) 363, 369, 375, 383, 908, 913
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 4 cut(s) 162, 186, 273, 673
ApeKI GCWGC 4 cut(s) 104, 329, 422, 433
ApoI RAATTY 1 cut(s) 457
AspLEI GCGC 1 cut(s) 951
AspS9I GGNCC 3 cut(s) 163, 274, 589
AsuC2I CCSGG 3 cut(s) 133, 134, 269
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 589
BalI TGGCCA 1 cut(s) 675
BamHI GGATCC 3 cut(s) 487, 523, 644
BauI CACGAG 2 cut(s) 22, 257
BbrPI CACGTG 1 cut(s) 180
BbsI GAAGAC 1 cut(s) 884
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 116, 316, 409, 420
BccI CCATC 1 cut(s) 725
BceAI ACGGC 4 cut(s) 54, 299, 317, 1006
BciT130I CCWGG 1 cut(s) 642
BcnI CCSGG 3 cut(s) 133, 134, 269
BcoDI GTCTC 6 cut(s) 363, 369, 375, 383, 908, 913
BfaI CTAG 1 cut(s) 831
BfuAI ACCTGC 1 cut(s) 927
BglI GCCNNNNNGGC 1 cut(s) 990
BisI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 6 cut(s) 106, 251, 331, 424, 435, 986
Bme1390I CCNGG 4 cut(s) 133, 134, 269, 642
Bme18I GGWCC 1 cut(s) 589
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 3 cut(s) 163, 274, 589
BmiI GGNNCC 6 cut(s) 165, 276, 489, 525, 591, 646
BmrFI CCNGG 4 cut(s) 133, 134, 269, 642
BmsI GCATC 4 cut(s) 14, 316, 802, 902
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 884
Bpu10I CCTNAGC 2 cut(s) 245, 552
Bpu1102I GCTNAGC 1 cut(s) 945
BpuEI CTTGAG 2 cut(s) 519, 531
BpuMI CCSGG 3 cut(s) 133, 134, 269
BsaAI YACGTR 2 cut(s) 180, 472
BsaHI GRCGYC 2 cut(s) 195, 993
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 4 cut(s) 132, 417, 447, 670
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 138
Bse118I RCCGGY 1 cut(s) 252
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 4 cut(s) 132, 417, 447, 670
BseGI GGATG 3 cut(s) 701, 718, 793
BseLI CCNNNNNNNGG 2 cut(s) 133, 138
BseMII CTCAG 3 cut(s) 259, 387, 566
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 4 cut(s) 116, 316, 409, 420
Bsh1236I CGCG 1 cut(s) 898
Bsh1285I CGRYCG 2 cut(s) 220, 777
BshFI GGCC 4 cut(s) 164, 188, 275, 675
BsiEI CGRYCG 2 cut(s) 220, 777
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 133, 253, 269, 797
BslFI GGGAC 2 cut(s) 251, 575
BslI CCNNNNNNNGG 2 cut(s) 133, 138
BsmAI GTCTC 6 cut(s) 363, 369, 375, 383, 908, 913
BsmBI CGTCTC 5 cut(s) 363, 369, 375, 383, 908
BsmFI GGGAC 2 cut(s) 251, 575
BsnI GGCC 4 cut(s) 164, 188, 275, 675
Bso31I GGTCTC 1 cut(s) 913
BsoBI CYCGRG 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 945
Bsp19I CCATGG 1 cut(s) 670
Bsp68I TCGCGA 1 cut(s) 898
BspACI CCGC 9 cut(s) 66, 124, 250, 312, 800, 818, 911, 959, 985
BspANI GGCC 4 cut(s) 164, 188, 275, 675
BspCNI CTCAG 3 cut(s) 258, 388, 565
BspFNI CGCG 1 cut(s) 898
BspLI GGNNCC 6 cut(s) 165, 276, 489, 525, 591, 646
BspMI ACCTGC 1 cut(s) 927
BspTNI GGTCTC 1 cut(s) 913
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 4 cut(s) 132, 417, 447, 670
BssNI GRCGYC 2 cut(s) 195, 993
BssSI CACGAG 2 cut(s) 22, 257
BssT1I CCWWGG 2 cut(s) 447, 670
Bst2BI CACGAG 2 cut(s) 22, 257
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 3 cut(s) 569, 610, 680
Bst6I CTCTTC 1 cut(s) 848
BstACI GRCGYC 2 cut(s) 195, 993
BstBAI YACGTR 2 cut(s) 180, 472
BstC8I GCNNGC 4 cut(s) 117, 158, 162, 254
BstDEI CTNAG 4 cut(s) 245, 396, 552, 945
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 3 cut(s) 701, 718, 793
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 1 cut(s) 951
BstMAI GTCTC 6 cut(s) 363, 369, 375, 383, 908, 913
BstMCI CGRYCG 2 cut(s) 220, 777
BstMWI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 672, 990
BstNI CCWGG 1 cut(s) 642
BstNSI RCATGY 1 cut(s) 742
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 131, 132, 267, 640
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 4 cut(s) 116, 316, 409, 420
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 7 cut(s) 96, 451, 487, 499, 523, 644, 757
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 7 cut(s) 96, 451, 487, 499, 523, 644, 757
BsuRI GGCC 4 cut(s) 164, 188, 275, 675
BtgI CCRYGG 1 cut(s) 670
BtgZI GCGATG 1 cut(s) 879
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 701, 718, 793
BtsI GCAGTG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 525, 676
BtuMI TCGCGA 1 cut(s) 898
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 4 cut(s) 117, 158, 162, 254
CfoI GCGC 1 cut(s) 951
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 3 cut(s) 163, 274, 589
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 4 cut(s) 196, 203, 709, 982
Csp6I GTAC 3 cut(s) 469, 576, 844
CviAII CATG 3 cut(s) 484, 671, 739
CviQI GTAC 3 cut(s) 469, 576, 844
DdeI CTNAG 4 cut(s) 245, 396, 552, 945
DrdI GACNNNNNNGTC 2 cut(s) 587, 751
DseDI GACNNNNNNGTC 2 cut(s) 587, 751
EaeI YGGCCR 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
EciI GGCGGA 1 cut(s) 833
Eco130I CCWWGG 2 cut(s) 447, 670
Eco31I GGTCTC 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 589
Eco72I CACGTG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 447, 670
ErhI CCWWGG 2 cut(s) 447, 670
Esp3I CGTCTC 5 cut(s) 363, 369, 375, 383, 908
FaeI CATG 3 cut(s) 487, 674, 742
FaiI YATR 6 cut(s) 485, 663, 672, 710, 740, 909
FaqI GGGAC 2 cut(s) 251, 575
FatI CATG 3 cut(s) 483, 670, 738
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
FokI GGATG 3 cut(s) 688, 725, 780
Fsp4HI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
FspBI CTAG 1 cut(s) 831
GlaI GCGC 1 cut(s) 950
GluI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
HaeIII GGCC 4 cut(s) 164, 188, 275, 675
HapII CCGG 4 cut(s) 133, 253, 269, 797
HgaI GACGC 4 cut(s) 196, 203, 709, 982
HhaI GCGC 1 cut(s) 951
Hin1I GRCGYC 2 cut(s) 195, 993
Hin1II CATG 3 cut(s) 487, 674, 742
Hin6I GCGC 1 cut(s) 949
HinP1I GCGC 1 cut(s) 949
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 8 cut(s) 20, 43, 62, 264, 287, 305, 883, 927
HpaII CCGG 4 cut(s) 133, 253, 269, 797
Hpy166II GTNNAC 2 cut(s) 82, 337
Hpy188I TCNGA 8 cut(s) 301, 325, 364, 456, 481, 528, 757, 807
Hpy188III TCNNGA 5 cut(s) 503, 554, 824, 874, 897
Hpy8I GTNNAC 2 cut(s) 82, 337
Hpy99I CGWCG 6 cut(s) 40, 194, 197, 368, 725, 998
HpyCH4III ACNGT 3 cut(s) 569, 610, 680
HpyCH4IV ACGT 4 cut(s) 174, 179, 471, 976
HpyCH4V TGCA 3 cut(s) 27, 183, 598
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 672, 990
HpyF3I CTNAG 4 cut(s) 245, 396, 552, 945
HpySE526I ACGT 4 cut(s) 174, 179, 471, 976
Hsp92I GRCGYC 2 cut(s) 195, 993
Hsp92II CATG 3 cut(s) 487, 674, 742
HspAI GCGC 1 cut(s) 949
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 441, 559
Lsp1109I GCAGC 4 cut(s) 116, 316, 409, 420
LweI GCATC 4 cut(s) 14, 316, 802, 902
MaeI CTAG 1 cut(s) 831
MaeII ACGT 4 cut(s) 174, 179, 471, 976
MaeIII GTNAC 2 cut(s) 175, 887
MboII GAAGA 2 cut(s) 865, 889
MflI RGATCY 7 cut(s) 96, 451, 487, 499, 523, 644, 757
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 2 cut(s) 457, 508
MluNI TGGCCA 1 cut(s) 675
MlyI GAGTC 6 cut(s) 14, 37, 56, 273, 281, 299
MmeI TCCRAC 1 cut(s) 387
Mox20I TGGCCA 1 cut(s) 675
MroNI GCCGGC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 675
MseI TTAA 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 675
MspI CCGG 4 cut(s) 133, 253, 269, 797
MspR9I CCNGG 4 cut(s) 133, 134, 269, 642
MvaI CCWGG 1 cut(s) 642
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 672, 990
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 3 cut(s) 133, 134, 269
NcoI CCATGG 1 cut(s) 670
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 487, 674, 742
NlaIV GGNNCC 6 cut(s) 165, 276, 489, 525, 591, 646
NmeAIII GCCGAG 2 cut(s) 80, 442
NmuCI GTSAC 1 cut(s) 175
NruI TCGCGA 1 cut(s) 898
NspI RCATGY 1 cut(s) 742
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 883, 927
PkrI GCNGC 6 cut(s) 106, 251, 331, 424, 435, 986
Ple19I CGATCG 1 cut(s) 777
PleI GAGTC 6 cut(s) 14, 37, 56, 272, 281, 299
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
PpsI GAGTC 6 cut(s) 14, 37, 56, 272, 281, 299
Ppu21I YACGTR 2 cut(s) 180, 472
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 640
PspCI CACGTG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 6 cut(s) 165, 276, 489, 525, 591, 646
PspPI GGNCC 3 cut(s) 163, 274, 589
PsuI RGATCY 7 cut(s) 96, 451, 487, 499, 523, 644, 757
PvuI CGATCG 1 cut(s) 777
RruI TCGCGA 1 cut(s) 898
RsaI GTAC 3 cut(s) 470, 577, 845
RsaNI GTAC 3 cut(s) 469, 576, 844
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 6 cut(s) 105, 250, 330, 423, 434, 985
Sau96I GGNCC 3 cut(s) 163, 274, 589
SchI GAGTC 6 cut(s) 14, 37, 56, 273, 281, 299
ScrFI CCNGG 4 cut(s) 133, 134, 269, 642
SfaNI GCATC 4 cut(s) 14, 316, 802, 902
SinI GGWCC 1 cut(s) 589
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 534, 546
SmoI CTYRAG 2 cut(s) 534, 546
Sse9I AATT 2 cut(s) 457, 508
SsiI CCGC 9 cut(s) 66, 124, 250, 312, 800, 818, 911, 959, 985
SspMI CTAG 1 cut(s) 831
StyD4I CCNGG 4 cut(s) 131, 132, 267, 640
StyI CCWWGG 2 cut(s) 447, 670
TaaI ACNGT 3 cut(s) 569, 610, 680
TaiI ACGT 4 cut(s) 177, 182, 474, 979
TaqI TCGA 5 cut(s) 8, 345, 773, 873, 966
TaqII GACCGA 2 cut(s) 234, 366
TasI AATT 2 cut(s) 457, 508
TauI GCSGC 2 cut(s) 252, 987
TfiI GAWTC 2 cut(s) 883, 927
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 2 cut(s) 525, 683
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 4 cut(s) 104, 329, 422, 433
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 646, 801
TspGWI ACGGA 7 cut(s) 381, 387, 393, 399, 480, 597, 761
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 2 cut(s) 525, 683
VpaK11BI GGWCC 1 cut(s) 589
XapI RAATTY 1 cut(s) 457
XceI RCATGY 1 cut(s) 742
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.