Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

56777452 .. 56779850

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G030090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAGGAGGGAAGAAATTCTTCCTGCTGTATGTTCCTATGCGGAATCAAATCCAATTGAAGCAAGCCGCCGACACGAGAGTTCTGGTGGCTCTGTTCTATGACTCGCTAAACTCGGACAACTCAACATCCATCAAATCTAATGCTGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGACTTAGACGAAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCATGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACGTGTTCTCCGACATGGATCCGTATTTGGATCTGGATGACGAGGCAGTGGATCCGAAAGCTACAGCTCAAGAAGAGCATAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTACGACTACCATGGCCACTTTTTAAGCCAGAGTGTATCATCATCCTCTATGGATGTTAGTGTCGTGCCAGATGGCAACATGCTGACGGAGTTGTTAGATCCTTACCCCAAGTCCATCGGCGATCAGGTGTTGAGGTATAGAGAGAAGAGAAAGAACCGAAAGTTTAAAAAGACGATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

212

Amino Acids

23.89

Weight (kDa)

4.58

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AciI	CCGC	4 cut(s)	43, 69, 149, 169
AcoI	YGGCCR	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	17
AfaI	GTAC	2 cut(s)	281, 373
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	2 cut(s)	61, 425
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	3 cut(s)	341, 347, 420
AluI	AGCT	3 cut(s)	341, 347, 420
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	3 cut(s)	146, 233, 244
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	2 cut(s)	17, 20
AspS9I	GGNCC	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	385
BalI	TGGCCA	1 cut(s)	471
BamHI	GGATCC	3 cut(s)	298, 331, 440
BauI	CACGAG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	133, 220, 231
BccI	CCATC	3 cut(s)	140, 521, 578
BciT130I	CCWGG	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	4 cut(s)	69, 147, 234, 245
BlsI	GCNGC	4 cut(s)	70, 148, 235, 246
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	4 cut(s)	300, 333, 387, 442
BmrFI	CCNGG	1 cut(s)	438
BoxI	GACNNNNGTC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	228, 466
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	228, 466
BseGI	GGATG	4 cut(s)	128, 322, 497, 514
BseMII	CTCAG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	133, 220, 231
BshFI	GGCC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	471
Bsp143I	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	4 cut(s)	43, 69, 149, 169
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	4 cut(s)	300, 333, 387, 442
BspQI	GCTCTTC	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	228, 466
BssMI	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
BssSI	CACGAG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	466
Bst2BI	CACGAG	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	365, 406
Bst6I	CTCTTC	2 cut(s)	348, 596
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	184, 207
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	4 cut(s)	128, 322, 497, 514
BstKTI	GATC	8 cut(s)	256, 265, 301, 313, 334, 443, 556, 580
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	438
BstNSI	RCATGY	1 cut(s)	538
BstPAI	GACNNNNGTC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	133, 220, 231
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	7 cut(s)	253, 262, 298, 310, 331, 440, 553
BstYI	RGATCY	7 cut(s)	253, 262, 298, 310, 331, 440, 553
BsuRI	GGCC	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	4 cut(s)	128, 322, 497, 514
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	280, 372
CviAII	CATG	4 cut(s)	240, 295, 467, 535
CviQI	GTAC	2 cut(s)	280, 372
DdeI	CTNAG	2 cut(s)	184, 207
DpnI	GATC	8 cut(s)	255, 264, 300, 312, 333, 442, 555, 579
DpnII	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
DraI	TTTAAA	1 cut(s)	622
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	348, 596
EarI	CTCTTC	2 cut(s)	348, 596
Eco130I	CCWWGG	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	436
EcoT14I	CCWWGG	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	4 cut(s)	243, 298, 470, 538
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	371
FatI	CATG	4 cut(s)	239, 294, 466, 534
Fnu4HI	GCNGC	4 cut(s)	69, 147, 234, 245
FokI	GGATG	4 cut(s)	115, 329, 484, 521
Fsp4HI	GCNGC	4 cut(s)	69, 147, 234, 245
GluI	GCNGC	4 cut(s)	69, 147, 234, 245
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	243, 298, 470, 538
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	46, 104, 631
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	118, 181, 267, 292, 336
Hpy188III	TCNNGA	2 cut(s)	314, 350
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	365, 406
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	1 cut(s)	394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	184, 207
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	243, 298, 470, 538
Kzo9I	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	3 cut(s)	133, 220, 231
MaeII	ACGT	1 cut(s)	282
MalI	GATC	8 cut(s)	255, 264, 300, 312, 333, 442, 555, 579
MboI	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
MboII	GAAGA	5 cut(s)	13, 25, 203, 365, 613
MfeI	CAATTG	1 cut(s)	56
MflI	RGATCY	7 cut(s)	253, 262, 298, 310, 331, 440, 553
MlsI	TGGCCA	1 cut(s)	471
MluCI	AATT	2 cut(s)	17, 56
MluNI	TGGCCA	1 cut(s)	471
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	204, 315
MnlI	CCTC	8 cut(s)	170, 202, 214, 223, 316, 423, 511, 582
Mox20I	TGGCCA	1 cut(s)	471
MroXI	GAANNNNTTC	2 cut(s)	17, 20
MscI	TGGCCA	1 cut(s)	471
MseI	TTAA	3 cut(s)	479, 621, 637
Msp20I	TGGCCA	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	466
NdeII	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
NlaIII	CATG	4 cut(s)	243, 298, 470, 538
NlaIV	GGNNCC	4 cut(s)	300, 333, 387, 442
NmeAIII	GCCGAG	1 cut(s)	253
NspI	RCATGY	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PdmI	GAANNNNTTC	2 cut(s)	17, 20
PfeI	GAWTC	2 cut(s)	46, 631
PkrI	GCNGC	4 cut(s)	70, 148, 235, 246
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	4 cut(s)	300, 333, 387, 442
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	7 cut(s)	253, 262, 298, 310, 331, 440, 553
RsaI	GTAC	2 cut(s)	281, 373
RsaNI	GTAC	2 cut(s)	280, 372
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	479, 621, 637
SatI	GCNGC	4 cut(s)	69, 147, 234, 245
Sau3AI	GATC	8 cut(s)	253, 262, 298, 310, 331, 440, 553, 577
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	438
SetI	ASST	7 cut(s)	213, 285, 343, 349, 422, 585, 593
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	17, 56
SsiI	CCGC	4 cut(s)	43, 69, 149, 169
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	365, 406
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	17, 56
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	46, 631
Tru1I	TTAA	3 cut(s)	479, 621, 637
Tru9I	TTAA	3 cut(s)	479, 621, 637
TscAI	CASTG	1 cut(s)	333
TseI	GCWGC	3 cut(s)	146, 233, 244
TspDTI	ATGAA	2 cut(s)	228, 442
TspGWI	ACGGA	5 cut(s)	210, 275, 291, 393, 557
TspRI	CASTG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	17, 20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.