Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

29305073 .. 29306617

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g41420.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCGAGTATGGCCTCGAAGCTCTGCGACTCGTGCAAATCGGCAACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTGTGTATAAACTGCGATACAAAGATCCACGCAGCCAACAAGCTCGCTTCCCGCCACGCGCGGGTCTGGTTGTGCGAGGTGTGCGAGCAAGCTCCTGCCCACGTCACGTGCAAGGCCGACGACGCCACGCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCTCTCAGCCGCCGACACGAGAGAGTCCCGGTGGCCCCGTTCTACGACTCACTGAACTCGGGCAAATCTGATGCTGCCGCCGTCAACTTGCTCGATGACCGCTACTTGTCGGACGGAGAGACAACTGAGGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGCCAGTACGTGTTCTCTGACATGGATTCGTATTTGGATCTGGATTACGGGACGCCAGCGGATCCCAAAACTGAAGCTCAGGAGCAGAACAGTAGTGCTACTGACGGAGTGGTCCCTGTGCAGAGCAAGAGCGCCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATTTAAGCCAGAGTTGTCTCTCTTTGTGCTCAGGTATCATCATCGCCTCTGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

223

Amino Acids

23.91

Weight (kDa)

4.79

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	7 - 45	1.7e-06	B-box zinc finger
zf-B_box	PF00643	49 - 94	7e-07	B-box zinc finger
CCT	PF06203	251 - 293	4.6e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccII	CGCG	2 cut(s)	140, 142
AciI	CCGC	7 cut(s)	75, 133, 142, 259, 327, 349, 485
AclWI	GGATC	7 cut(s)	100, 423, 471, 482, 495, 588, 601
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	519
AcvI	CACGTG	2 cut(s)	189, 222
AcyI	GRCGYC	2 cut(s)	204, 479
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	5 cut(s)	22, 124, 173, 503, 573
AluI	AGCT	5 cut(s)	22, 124, 173, 503, 573
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	2 cut(s)	362, 632
AlwI	GGATC	7 cut(s)	100, 423, 471, 482, 495, 588, 601
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	5 cut(s)	12, 195, 282, 378, 427
ApeKI	GCWGC	4 cut(s)	113, 323, 386, 397
ApoI	RAATTY	1 cut(s)	421
AspLEI	GCGC	2 cut(s)	142, 560
AspS9I	GGNCC	3 cut(s)	283, 427, 538
AsuC2I	CCSGG	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	538
AxyI	CCTNAGG	1 cut(s)	411
BamHI	GGATCC	2 cut(s)	487, 593
BauI	CACGAG	2 cut(s)	31, 266
BbrPI	CACGTG	2 cut(s)	189, 222
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	4 cut(s)	125, 310, 373, 384
BceAI	ACGGC	2 cut(s)	63, 314
BciT130I	CCWGG	1 cut(s)	591
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	362, 632
BfoI	RGCGCY	1 cut(s)	561
BisI	GCNGC	6 cut(s)	114, 259, 324, 327, 387, 398
BlsI	GCNGC	6 cut(s)	115, 260, 325, 328, 388, 399
Bme1390I	CCNGG	2 cut(s)	278, 591
Bme18I	GGWCC	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	283, 427, 538
BmiI	GGNNCC	4 cut(s)	285, 489, 540, 595
BmrFI	CCNGG	2 cut(s)	278, 591
BmsI	GCATC	1 cut(s)	310
Bpu10I	CCTNAGC	2 cut(s)	504, 640
BpuMI	CCSGG	1 cut(s)	278
BsaAI	YACGTR	3 cut(s)	189, 222, 436
BsaHI	GRCGYC	2 cut(s)	204, 479
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	668
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	4 cut(s)	268, 366, 518, 654
BseNI	ACTGG	1 cut(s)	430
BseXI	GCAGC	4 cut(s)	125, 310, 373, 384
BseYI	CCCAGC	1 cut(s)	561
BsgI	GTGCAG	1 cut(s)	566
Bsh1236I	CGCG	2 cut(s)	140, 142
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	5 cut(s)	14, 197, 284, 380, 429
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	641
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	278
BslFI	GGGAC	3 cut(s)	260, 490, 524
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	2 cut(s)	362, 632
BsmFI	GGGAC	3 cut(s)	260, 490, 524
BsnI	GGCC	5 cut(s)	14, 197, 284, 380, 429
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	5 cut(s)	105, 415, 463, 487, 593
BspACI	CCGC	7 cut(s)	75, 133, 142, 259, 327, 349, 485
BspANI	GGCC	5 cut(s)	14, 197, 284, 380, 429
BspCNI	CTCAG	4 cut(s)	267, 367, 517, 653
BspFNI	CGCG	2 cut(s)	140, 142
BspLI	GGNNCC	4 cut(s)	285, 489, 540, 595
BspPI	GGATC	7 cut(s)	100, 423, 471, 482, 495, 588, 601
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	5 cut(s)	105, 415, 463, 487, 593
BssNI	GRCGYC	2 cut(s)	204, 479
BssSI	CACGAG	2 cut(s)	31, 266
Bst2BI	CACGAG	2 cut(s)	31, 266
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	518
BstACI	GRCGYC	2 cut(s)	204, 479
BstBAI	YACGTR	3 cut(s)	189, 222, 436
BstC8I	GCNNGC	4 cut(s)	126, 167, 171, 483
BstDEI	CTNAG	5 cut(s)	254, 375, 411, 504, 640
BstF5I	GGATG	1 cut(s)	668
BstFNI	CGCG	2 cut(s)	140, 142
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	2 cut(s)	142, 560
BstKTI	GATC	5 cut(s)	108, 418, 466, 490, 596
BstMAI	GTCTC	2 cut(s)	362, 632
BstMBI	GATC	5 cut(s)	105, 415, 463, 487, 593
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 33, 74, 162, 203, 222, 386
BstNI	CCWGG	1 cut(s)	591
BstSCI	CCNGG	2 cut(s)	276, 589
BstUI	CGCG	2 cut(s)	140, 142
BstV1I	GCAGC	4 cut(s)	125, 310, 373, 384
BstX2I	RGATCY	5 cut(s)	105, 415, 463, 487, 593
BstYI	RGATCY	5 cut(s)	105, 415, 463, 487, 593
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	5 cut(s)	14, 197, 284, 380, 429
BtgZI	GCGATG	1 cut(s)	637
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	4 cut(s)	126, 167, 171, 483
CfoI	GCGC	2 cut(s)	142, 560
Cfr13I	GGNCC	3 cut(s)	283, 427, 538
CseI	GACGC	3 cut(s)	205, 212, 487
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	5 cut(s)	254, 375, 411, 504, 640
DpnI	GATC	5 cut(s)	107, 417, 465, 489, 595
DpnII	GATC	5 cut(s)	105, 415, 463, 487, 593
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	519
Eco72I	CACGTG	2 cut(s)	189, 222
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	589
FaeI	CATG	1 cut(s)	451
FaiI	YATR	3 cut(s)	11, 89, 449
FaqI	GGGAC	3 cut(s)	260, 490, 524
FatI	CATG	1 cut(s)	447
FauI	CCCGC	2 cut(s)	135, 140
Fnu4HI	GCNGC	6 cut(s)	114, 259, 324, 327, 387, 398
Fsp4HI	GCNGC	6 cut(s)	114, 259, 324, 327, 387, 398
GlaI	GCGC	2 cut(s)	141, 559
GluI	GCNGC	6 cut(s)	114, 259, 324, 327, 387, 398
GsaI	CCCAGC	1 cut(s)	565
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	5 cut(s)	14, 197, 284, 380, 429
HapII	CCGG	1 cut(s)	278
HgaI	GACGC	3 cut(s)	205, 212, 487
HhaI	GCGC	2 cut(s)	142, 560
Hin1I	GRCGYC	2 cut(s)	204, 479
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	2 cut(s)	140, 558
HinP1I	GCGC	2 cut(s)	140, 558
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	6 cut(s)	29, 52, 71, 273, 296, 452
HpaII	CCGG	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	319, 361, 420, 445
Hpy188III	TCNNGA	3 cut(s)	467, 506, 660
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	4 cut(s)	183, 188, 221, 435
HpyCH4V	TGCA	3 cut(s)	36, 192, 547
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 33, 74, 162, 203, 222, 386
HpyF3I	CTNAG	5 cut(s)	254, 375, 411, 504, 640
HpySE526I	ACGT	4 cut(s)	183, 188, 221, 435
Hsp92I	GRCGYC	2 cut(s)	204, 479
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	2 cut(s)	140, 558
Kzo9I	GATC	5 cut(s)	105, 415, 463, 487, 593
LmnI	GCTCC	3 cut(s)	178, 405, 508
Lsp1109I	GCAGC	4 cut(s)	125, 310, 373, 384
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	4 cut(s)	183, 188, 221, 435
MaeIII	GTNAC	2 cut(s)	184, 217
MalI	GATC	5 cut(s)	107, 417, 465, 489, 595
MboI	GATC	5 cut(s)	105, 415, 463, 487, 593
MflI	RGATCY	5 cut(s)	105, 415, 463, 487, 593
MhlI	GDGCHC	1 cut(s)	641
MluCI	AATT	1 cut(s)	421
MlyI	GAGTC	5 cut(s)	23, 46, 65, 282, 290
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	7 cut(s)	25, 151, 261, 370, 376, 576, 667
MseI	TTAA	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	278, 591
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	2 cut(s)	140, 142
MwoI	GCNNNNNNNGC	7 cut(s)	11, 33, 74, 162, 203, 222, 386
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	5 cut(s)	105, 415, 463, 487, 593
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	4 cut(s)	285, 489, 540, 595
NmeAIII	GCCGAG	2 cut(s)	89, 406
NmuCI	GTSAC	2 cut(s)	184, 217
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	6 cut(s)	115, 260, 325, 328, 388, 399
PleI	GAGTC	5 cut(s)	23, 46, 65, 281, 290
PmaCI	CACGTG	2 cut(s)	189, 222
PmlI	CACGTG	2 cut(s)	189, 222
PpsI	GAGTC	5 cut(s)	23, 46, 65, 281, 290
Ppu21I	YACGTR	3 cut(s)	189, 222, 436
Psp6I	CCWGG	1 cut(s)	589
PspCI	CACGTG	2 cut(s)	189, 222
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	4 cut(s)	285, 489, 540, 595
PspPI	GGNCC	3 cut(s)	283, 427, 538
PsuI	RGATCY	5 cut(s)	105, 415, 463, 487, 593
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	614
SatI	GCNGC	6 cut(s)	114, 259, 324, 327, 387, 398
Sau3AI	GATC	5 cut(s)	105, 415, 463, 487, 593
Sau96I	GGNCC	3 cut(s)	283, 427, 538
SchI	GAGTC	5 cut(s)	23, 46, 65, 282, 290
ScrFI	CCNGG	2 cut(s)	278, 591
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	538
Sse9I	AATT	1 cut(s)	421
SsiI	CCGC	7 cut(s)	75, 133, 142, 259, 327, 349, 485
StyD4I	CCNGG	2 cut(s)	276, 589
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	4 cut(s)	186, 191, 224, 438
TaqI	TCGA	2 cut(s)	17, 342
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	421
TauI	GCSGC	2 cut(s)	261, 329
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	614
Tru9I	TTAA	1 cut(s)	614
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	2 cut(s)	184, 217
TseI	GCWGC	4 cut(s)	113, 323, 386, 397
Tsp45I	GTSAC	2 cut(s)	184, 217
TspDTI	ATGAA	1 cut(s)	595
TspGWI	ACGGA	2 cut(s)	378, 546
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.