Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

27779142 .. 27779669

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTGCGGTCAACTTCCTCAATGACCGCTACTTGTCCGACGCAGACGGAGACGGAGAGACTACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACATGTTCTCCGACTTGGATCTGTATTTGGATCTGGATTATGGGGCAGTGGATCCGAAAGCTCCAACTCAGGAGGAGCATAACAATAGCGGTACTGACGGAGTGGTTCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAACTTCCAAGCCTTTCATCTACGGCTACCATGGTCACTGTTTAAGCCAGAGTGTATCATCATCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGTTGTTAGATCCCTACCCCAAGTCGATCGGAAATCAGTTAATGCATCCAGCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

149

Amino Acids

16.43

Weight (kDa)

4.67

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	7, 27, 216, 443
AclWI	GGATC	7 cut(s)	95, 117, 153, 165, 173, 186, 395
AfaI	GTAC	2 cut(s)	128, 220
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	2 cut(s)	188, 267
AluI	AGCT	2 cut(s)	188, 267
Alw26I	GTCTC	2 cut(s)	44, 52
AlwI	GGATC	7 cut(s)	95, 117, 153, 165, 173, 186, 395
ApeKI	GCWGC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	368
BceAI	ACGGC	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	44, 52
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	180, 234
BmsI	GCATC	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	86, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseDI	CCNNGG	2 cut(s)	86, 313
BseGI	GGATG	3 cut(s)	344, 361, 436
BseMII	CTCAG	2 cut(s)	56, 209
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	420
BsiEI	CGRYCG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	44, 52
BsmBI	CGTCTC	1 cut(s)	44
Bsp143I	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	4 cut(s)	7, 27, 216, 443
BspCNI	CTCAG	2 cut(s)	57, 208
BspLI	GGNNCC	2 cut(s)	180, 234
BspPI	GGATC	7 cut(s)	95, 117, 153, 165, 173, 186, 395
BssECI	CCNNGG	2 cut(s)	86, 313
BssMI	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	253, 323
BstDEI	CTNAG	2 cut(s)	65, 195
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	344, 361, 436
BstKTI	GATC	7 cut(s)	103, 112, 148, 160, 181, 403, 420
BstMAI	GTCTC	2 cut(s)	44, 52
BstMBI	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstNSI	RCATGY	2 cut(s)	133, 385
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 400
BstYI	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 400
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	344, 361, 436
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 319
CseI	GACGC	2 cut(s)	49, 352
Csp6I	GTAC	2 cut(s)	127, 219
CviAII	CATG	3 cut(s)	130, 314, 382
CviJI	RGCY	8 cut(s)	85, 91, 188, 259, 267, 295, 309, 330
CviKI_1	RGCY	8 cut(s)	85, 91, 188, 259, 267, 295, 309, 330
CviQI	GTAC	2 cut(s)	127, 219
DdeI	CTNAG	2 cut(s)	65, 195
DpnI	GATC	7 cut(s)	102, 111, 147, 159, 180, 402, 419
DpnII	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
Eco130I	CCWWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	133, 317, 385
FaiI	YATR	6 cut(s)	131, 168, 207, 315, 353, 383
FatI	CATG	3 cut(s)	129, 313, 381
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	3 cut(s)	331, 368, 423
Fsp4HI	GCNGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	92
HgaI	GACGC	2 cut(s)	49, 352
Hin1II	CATG	3 cut(s)	133, 317, 385
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	5 cut(s)	39, 114, 139, 183, 422
Hpy188III	TCNNGA	2 cut(s)	161, 197
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	2 cut(s)	43, 368
HpyCH4III	ACNGT	2 cut(s)	253, 323
HpyCH4V	TGCA	2 cut(s)	241, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	65, 195
Hsp92II	CATG	3 cut(s)	133, 317, 385
Kzo9I	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
LmnI	GCTCC	3 cut(s)	99, 193, 202
LpnPI	CCDG	7 cut(s)	111, 146, 182, 249, 269, 344, 384
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	7 cut(s)	102, 111, 147, 159, 180, 402, 419
MboI	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
MflI	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 400
MmeI	TCCRAC	3 cut(s)	62, 162, 215
MnlI	CCTC	7 cut(s)	28, 60, 72, 81, 193, 270, 358
Mph1103I	ATGCAT	1 cut(s)	438
MseI	TTAA	2 cut(s)	326, 431
MspA1I	CMGCKG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
NlaIII	CATG	3 cut(s)	133, 317, 385
NlaIV	GGNNCC	2 cut(s)	180, 234
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	2 cut(s)	133, 385
PciI	ACATGT	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	93
Ple19I	CGATCG	1 cut(s)	420
PscI	ACATGT	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	180, 234
PsuI	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 400
PvuI	CGATCG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	128, 220
RsaNI	GTAC	2 cut(s)	127, 219
SaqAI	TTAA	2 cut(s)	326, 431
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	7 cut(s)	100, 109, 145, 157, 178, 400, 417
SetI	ASST	3 cut(s)	71, 190, 269
SfaNI	GCATC	1 cut(s)	445
SsiI	CCGC	4 cut(s)	7, 27, 216, 443
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	253, 323
TaqI	TCGA	1 cut(s)	416
TatI	WGTACW	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	326, 431
Tru9I	TTAA	2 cut(s)	326, 431
TscAI	CASTG	2 cut(s)	180, 326
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	5 cut(s)	62, 68, 122, 240, 404
TspRI	CASTG	2 cut(s)	180, 326
XceI	RCATGY	2 cut(s)	133, 385
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.