Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

33101621 .. 33111697

Gene Structure 10077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG254900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGCTGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGACGCAGACGGAGATGGAGAGACGACTGAGGTCAGCAAAGAGGAAGCTGAGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACATGTTCTCTGACATGGATCCGTATTTGGATCTGGATTACGGGGCAGTGGATCTGAAAGCTCCAACTCAGGAGGAGCAGAACAGTAGCGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAACTTCCAAGCCTTTCATCTATGGCCACCATGGCCACTATTTAAGCCAGAGTTTGGAGGCTTTACAGAGCGAGAATGGGTTGCTGAGAAAATCTGTGGAGGATCTCCGACAAGAAACATCCGAAGGGAGTTTGAATTCGGGGATGTACCATGGAATGGAGAGTAGTGGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

152

Amino Acids

16.96

Weight (kDa)

5.03

Isoelectric Point (pI)

69.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccB7I	CCANNNNNTGG	2 cut(s)	337, 439
AciI	CCGC	3 cut(s)	7, 27, 216
AclWI	GGATC	7 cut(s)	95, 117, 140, 153, 165, 186, 393
AcoI	YGGCCR	2 cut(s)	307, 316
AcsI	RAATTY	1 cut(s)	418
AfaI	GTAC	3 cut(s)	128, 220, 431
AfiI	CCNNNNNNNGG	2 cut(s)	337, 439
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	272, 418
AluBI	AGCT	3 cut(s)	85, 188, 267
AluI	AGCT	3 cut(s)	85, 188, 267
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	7 cut(s)	95, 117, 140, 153, 165, 186, 393
AoxI	GGCC	2 cut(s)	307, 316
ApeKI	GCWGC	2 cut(s)	4, 91
ApoI	RAATTY	1 cut(s)	418
AspS9I	GGNCC	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	2 cut(s)	309, 318
BamHI	GGATCC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	52
BglI	GCCNNNNNGGC	1 cut(s)	315
BisI	GCNGC	2 cut(s)	5, 92
BlsI	GCNGC	2 cut(s)	6, 93
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	147, 234
BoxI	GACNNNNGTC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	313, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 439
BseDI	CCNNGG	2 cut(s)	313, 433
BseGI	GGATG	2 cut(s)	401, 432
BseLI	CCNNNNNNNGG	2 cut(s)	337, 439
BseMII	CTCAG	4 cut(s)	56, 77, 209, 359
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	309, 318
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	337, 439
BsmAI	GTCTC	1 cut(s)	52
BsmBI	CGTCTC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	2 cut(s)	309, 318
Bsp143I	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
Bsp19I	CCATGG	2 cut(s)	313, 433
BspACI	CCGC	3 cut(s)	7, 27, 216
BspANI	GGCC	2 cut(s)	309, 318
BspCNI	CTCAG	4 cut(s)	57, 78, 208, 360
BspLI	GGNNCC	2 cut(s)	147, 234
BspPI	GGATC	7 cut(s)	95, 117, 140, 153, 165, 186, 393
BssECI	CCNNGG	2 cut(s)	313, 433
BssMI	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
BssT1I	CCWWGG	2 cut(s)	313, 433
Bst4CI	ACNGT	2 cut(s)	212, 253
BstDEI	CTNAG	4 cut(s)	65, 86, 195, 368
BstDSI	CCRYGG	2 cut(s)	313, 433
BstF5I	GGATG	2 cut(s)	401, 432
BstKTI	GATC	6 cut(s)	103, 112, 148, 160, 181, 388
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 315
BstNSI	RCATGY	1 cut(s)	133
BstPAI	GACNNNNGTC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 385
BstYI	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 385
BsuRI	GGCC	2 cut(s)	309, 318
BtgI	CCRYGG	2 cut(s)	313, 433
BtsCI	GGATG	2 cut(s)	401, 432
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	127, 219, 430
CviAII	CATG	4 cut(s)	130, 142, 314, 434
CviQI	GTAC	3 cut(s)	127, 219, 430
DdeI	CTNAG	4 cut(s)	65, 86, 195, 368
DpnI	GATC	6 cut(s)	102, 111, 147, 159, 180, 387
DpnII	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	307, 316
Eco130I	CCWWGG	2 cut(s)	313, 433
Eco47I	GGWCC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	313, 433
ErhI	CCWWGG	2 cut(s)	313, 433
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	4 cut(s)	133, 145, 317, 437
FaiI	YATR	5 cut(s)	131, 143, 306, 315, 435
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	4 cut(s)	129, 141, 313, 433
Fnu4HI	GCNGC	2 cut(s)	5, 92
FokI	GGATG	2 cut(s)	388, 439
Fsp4HI	GCNGC	2 cut(s)	5, 92
GluI	GCNGC	2 cut(s)	5, 92
HaeIII	GGCC	2 cut(s)	309, 318
HgaI	GACGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	133, 145, 317, 437
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	6 cut(s)	39, 114, 139, 183, 392, 406
Hpy188III	TCNNGA	2 cut(s)	161, 197
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	212, 253
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 315
HpyF3I	CTNAG	4 cut(s)	65, 86, 195, 368
Hsp92II	CATG	4 cut(s)	133, 145, 317, 437
Kzo9I	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
LmnI	GCTCC	3 cut(s)	99, 193, 202
LpnPI	CCDG	6 cut(s)	111, 146, 182, 249, 269, 344
Lsp1109I	GCAGC	1 cut(s)	78
MalI	GATC	6 cut(s)	102, 111, 147, 159, 180, 387
MboI	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
MflI	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 385
MlsI	TGGCCA	2 cut(s)	309, 318
MluCI	AATT	2 cut(s)	418, 454
MluNI	TGGCCA	2 cut(s)	309, 318
MmeI	TCCRAC	3 cut(s)	62, 215, 415
MnlI	CCTC	8 cut(s)	28, 60, 72, 81, 193, 270, 334, 376
Mox20I	TGGCCA	2 cut(s)	309, 318
MscI	TGGCCA	2 cut(s)	309, 318
MseI	TTAA	1 cut(s)	326
Msp20I	TGGCCA	2 cut(s)	309, 318
MwoI	GCNNNNNNNGC	2 cut(s)	91, 315
NcoI	CCATGG	2 cut(s)	313, 433
NdeII	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
NlaIII	CATG	4 cut(s)	133, 145, 317, 437
NlaIV	GGNNCC	2 cut(s)	147, 234
NspI	RCATGY	1 cut(s)	133
PciI	ACATGT	1 cut(s)	129
PflMI	CCANNNNNTGG	2 cut(s)	337, 439
PkrI	GCNGC	2 cut(s)	6, 93
PscI	ACATGT	1 cut(s)	129
PshAI	GACNNNNGTC	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	147, 234
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	6 cut(s)	100, 109, 145, 157, 178, 385
RsaI	GTAC	3 cut(s)	128, 220, 431
RsaNI	GTAC	3 cut(s)	127, 219, 430
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	5, 92
Sau3AI	GATC	6 cut(s)	100, 109, 145, 157, 178, 385
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	4 cut(s)	71, 87, 190, 269
SfiI	GGCCNNNNNGGCC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	232
Sse9I	AATT	2 cut(s)	418, 454
SsiI	CCGC	3 cut(s)	7, 27, 216
StyI	CCWWGG	2 cut(s)	313, 433
TaaI	ACNGT	2 cut(s)	212, 253
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	418, 454
TatI	WGTACW	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	4, 91
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	4 cut(s)	62, 122, 138, 240
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	2 cut(s)	337, 439
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.