MD08G1049600.v1.1

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
3877293 .. 3878822
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1049600.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGCATCGAAGCTCTGCGACTCTTGCCAATCGGCGACGGCGACTCTGTTCTGCCGCGCCGACTCCGCCTTCCTCTGCGTCAACTGCGACTCCAAGATCCACGCGGCCAACAAGCTCGCCTCCCGCCACCCCCGTGTCTGGCTCTGCGAGGTCTGCGAGCAAGCTCCAGCTCACGTCACCTGCAAGGCCGACGACGCCGCCCTCTGCGTCACCTGTGACCGCGACATCCACTCCGCCAACCCTCTCAGCAGTCGCCACGATCGAGTCCCTGTCACGCCGTTTTACGATTCCGTGAACTCGGCTGCAAACTCGGTCCCCGTCGTCAAATCTGTCGTCAACTTCCTCGACGACCGTTACTTGTCCGACGTGGACGGAGAGACCGAGGTGAGCAGGGAGGAGGCCGAGGCCGCCTCGTGGCTGCTCCCGAACCCCAAGGCGATGGAGAATCCAGATCTGAACTCGGGGCAGTACTTGTTTCAGGAAATGGATCCGTATCTGGATCTGGACTACGGGCATGTGGATCCGAAACTTGAAGAAGCTCAGGAGCAGAACAGCTGCGGCGCGGACGGCGTCGTTCCGGTGCAGAGCAAGAACATGCAGCCTCTGCTGGTTAACGACCAGAGCTTCGAACTCGACTTCTCCGCCGGCTCCAAGCCCTTCGTCTACGGCTACCACCACGCTCGGTGTCTGAGCCAGAGTGTATCATCGTCGTCGATGGACATCAGCGTCGTGCCGGATGGCAACGCGGTGACCGCTGCTGTGGAGACATCGCAACCGGCGGTCCAGCTCTCGTCCGTGGATCGCGTGGCGAGGGTGCTGAGGTACAGAGAGAAGCGGAAGAACCGAAAGTTCGAGAAGACGATACGGTACGCTTCGAGAAAAGCGTACGCGGAAACTCGGCCGCGAATCAAAGGCAGGTTCGCGAAGCGCACGGAGGTGGAGATCGAAGCCGAGAGGATGTGCCGCTACGGCGTCGTTCCGTCGTTTTAG

Protein Analysis

330

Amino Acids

36.53

Weight (kDa)

5.81

Isoelectric Point (pI)

43.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 45 1.7e-07 B-box zinc finger
zf-B_box PF00643 45 - 91 9.1e-07 B-box zinc finger
CCT PF06203 268 - 310 2.2e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
AasI GACNNNNNNGTC 1 cut(s) 725
Acc36I ACCTGC 2 cut(s) 188, 906
AccI GTMKAC 1 cut(s) 663
AccII CGCG 9 cut(s) 57, 104, 222, 563, 746, 804, 890, 904, 923
AclWI GGATC 7 cut(s) 91, 482, 495, 507, 515, 528, 807
AcoI YGGCCR 2 cut(s) 105, 899
AcyI GRCGYC 3 cut(s) 195, 570, 972
AfaI GTAC 4 cut(s) 470, 824, 869, 887
AfiI CCNNNNNNNGG 2 cut(s) 138, 414
AgsI TTSAA 1 cut(s) 533
AjiI CACGTC 2 cut(s) 175, 367
AleI CACNNNNGTG 2 cut(s) 132, 935
AluBI AGCT 8 cut(s) 13, 115, 164, 170, 539, 555, 624, 787
AluI AGCT 8 cut(s) 13, 115, 164, 170, 539, 555, 624, 787
Alw26I GTCTC 2 cut(s) 371, 758
AlwI GGATC 7 cut(s) 91, 482, 495, 507, 515, 528, 807
AlwNI CAGNNNCTG 1 cut(s) 604
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 5 cut(s) 105, 186, 399, 405, 899
ApeKI GCWGC 5 cut(s) 302, 418, 555, 598, 755
ArsI GACNNNNNNTTYG 4 cut(s) 318, 350, 608, 640
AspLEI GCGC 3 cut(s) 59, 563, 930
AspS9I GGNCC 2 cut(s) 313, 781
AsuHPI GGTGA 4 cut(s) 169, 202, 397, 760
AsuII TTCGAA 1 cut(s) 627
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 2 cut(s) 313, 781
BamHI GGATCC 2 cut(s) 487, 520
BauI CACGAG 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 863
BbvCI CCTCAGC 1 cut(s) 818
BbvI GCAGC 5 cut(s) 289, 405, 542, 610, 742
BccI CCATC 3 cut(s) 433, 709, 731
BceAI ACGGC 5 cut(s) 54, 262, 583, 682, 985
BcoDI GTCTC 2 cut(s) 371, 758
BfuAI ACCTGC 2 cut(s) 188, 906
BglI GCCNNNNNGGC 1 cut(s) 969
BglII AGATCT 1 cut(s) 451
BmcAI AGTACT 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 313, 781
BmeT110I CYCGRG 1 cut(s) 460
BmgBI CACGTC 2 cut(s) 175, 367
BmgT120I GGNCC 2 cut(s) 313, 781
BmiI GGNNCC 4 cut(s) 315, 489, 522, 649
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 863
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 2 cut(s) 540, 818
Bpu14I TTCGAA 1 cut(s) 627
BsaBI GATNNNNATC 2 cut(s) 492, 719
BsaHI GRCGYC 3 cut(s) 195, 570, 972
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 4 cut(s) 381, 402, 432, 795
BsaWI WCCGGW 1 cut(s) 577
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 414
Bse118I RCCGGY 2 cut(s) 644, 775
Bse8I GATNNNNATC 2 cut(s) 492, 719
BseDI CCNNGG 4 cut(s) 381, 402, 432, 795
BseGI GGATG 3 cut(s) 225, 742, 963
BseJI GATNNNNATC 2 cut(s) 492, 719
BseLI CCNNNNNNNGG 2 cut(s) 138, 414
BseMII CTCAG 4 cut(s) 259, 554, 680, 809
BseRI GAGGAG 1 cut(s) 410
BseX3I CGGCCG 1 cut(s) 899
BseXI GCAGC 5 cut(s) 289, 405, 542, 610, 742
BsgI GTGCAG 1 cut(s) 602
Bsh1236I CGCG 9 cut(s) 57, 104, 222, 563, 746, 804, 890, 904, 923
Bsh1285I CGRYCG 3 cut(s) 262, 352, 902
BshFI GGCC 5 cut(s) 107, 188, 401, 407, 901
BsiEI CGRYCG 3 cut(s) 262, 352, 902
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 4 cut(s) 578, 645, 734, 776
BsiWI CGTACG 1 cut(s) 885
BslFI GGGAC 2 cut(s) 251, 299
BslI CCNNNNNNNGG 2 cut(s) 138, 414
BsmAI GTCTC 2 cut(s) 371, 758
BsmFI GGGAC 2 cut(s) 251, 299
BsnI GGCC 5 cut(s) 107, 188, 401, 407, 901
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 627
Bsp143I GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
Bsp68I TCGCGA 1 cut(s) 923
BspANI GGCC 5 cut(s) 107, 188, 401, 407, 901
BspCNI CTCAG 4 cut(s) 258, 553, 681, 810
BspFNI CGCG 9 cut(s) 57, 104, 222, 563, 746, 804, 890, 904, 923
BspLI GGNNCC 4 cut(s) 315, 489, 522, 649
BspMI ACCTGC 2 cut(s) 188, 906
BspPI GGATC 7 cut(s) 91, 482, 495, 507, 515, 528, 807
BspT104I TTCGAA 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 371
BsrFI RCCGGY 2 cut(s) 644, 775
BssAI RCCGGY 2 cut(s) 644, 775
BssECI CCNNGG 4 cut(s) 381, 402, 432, 795
BssMI GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
BssNI GRCGYC 3 cut(s) 195, 570, 972
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 412
Bst4CI ACNGT 2 cut(s) 353, 867
BstACI GRCGYC 3 cut(s) 195, 570, 972
BstAPI GCANNNNNTGC 1 cut(s) 604
BstBI TTCGAA 1 cut(s) 627
BstC8I GCNNGC 4 cut(s) 117, 158, 162, 646
BstDEI CTNAG 4 cut(s) 245, 540, 689, 818
BstDSI CCRYGG 1 cut(s) 795
BstEII GGTNACC 1 cut(s) 748
BstF5I GGATG 3 cut(s) 225, 742, 963
BstFNI CGCG 9 cut(s) 57, 104, 222, 563, 746, 804, 890, 904, 923
BstHHI GCGC 3 cut(s) 59, 563, 930
BstKTI GATC 8 cut(s) 99, 262, 454, 490, 502, 523, 802, 945
BstMAI GTCTC 2 cut(s) 371, 758
BstMBI GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
BstMCI CGRYCG 3 cut(s) 262, 352, 902
BstNSI RCATGY 2 cut(s) 518, 598
BstPI GGTNACC 1 cut(s) 748
BstUI CGCG 9 cut(s) 57, 104, 222, 563, 746, 804, 890, 904, 923
BstV1I GCAGC 5 cut(s) 289, 405, 542, 610, 742
BstV2I GAAGAC 1 cut(s) 863
BstX2I RGATCY 5 cut(s) 96, 451, 487, 499, 520
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 5 cut(s) 96, 451, 487, 499, 520
BstZI CGGCCG 1 cut(s) 899
BsuRI GGCC 5 cut(s) 107, 188, 401, 407, 901
BtgI CCRYGG 1 cut(s) 795
BtgZI GCGATG 2 cut(s) 452, 753
BtrI CACGTC 2 cut(s) 175, 367
BtsCI GGATG 3 cut(s) 225, 742, 963
BtuMI TCGCGA 1 cut(s) 923
BveI ACCTGC 2 cut(s) 188, 906
Cac8I GCNNGC 4 cut(s) 117, 158, 162, 646
CaiI CAGNNNCTG 1 cut(s) 604
CfoI GCGC 3 cut(s) 59, 563, 930
Cfr10I RCCGGY 2 cut(s) 644, 775
Cfr13I GGNCC 2 cut(s) 313, 781
CseI GACGC 6 cut(s) 67, 196, 203, 559, 715, 961
Csp6I GTAC 4 cut(s) 469, 823, 868, 886
CviAII CATG 2 cut(s) 515, 595
CviQI GTAC 4 cut(s) 469, 823, 868, 886
DdeI CTNAG 4 cut(s) 245, 540, 689, 818
DpnI GATC 8 cut(s) 98, 261, 453, 489, 501, 522, 801, 944
DpnII GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
DrdI GACNNNNNNGTC 1 cut(s) 725
DseDI GACNNNNNNGTC 1 cut(s) 725
EaeI YGGCCR 2 cut(s) 105, 899
EagI CGGCCG 1 cut(s) 899
EciI GGCGGA 3 cut(s) 55, 223, 631
EclXI CGGCCG 1 cut(s) 899
Eco130I CCWWGG 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 2 cut(s) 313, 781
Eco52I CGGCCG 1 cut(s) 899
Eco88I CYCGRG 1 cut(s) 460
Eco91I GGTNACC 1 cut(s) 748
EcoO65I GGTNACC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 2 cut(s) 518, 598
FaiI YATR 2 cut(s) 516, 596
FaqI GGGAC 2 cut(s) 251, 299
FatI CATG 2 cut(s) 514, 594
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 1 cut(s) 663
FokI GGATG 3 cut(s) 212, 749, 970
GlaI GCGC 3 cut(s) 58, 562, 929
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 5 cut(s) 107, 188, 401, 407, 901
HapII CCGG 4 cut(s) 578, 645, 734, 776
HgaI GACGC 6 cut(s) 67, 196, 203, 559, 715, 961
HhaI GCGC 3 cut(s) 59, 563, 930
Hin1I GRCGYC 3 cut(s) 195, 570, 972
Hin1II CATG 2 cut(s) 518, 598
Hin6I GCGC 3 cut(s) 57, 561, 928
HinP1I GCGC 3 cut(s) 57, 561, 928
HincII GTYRAC 3 cut(s) 82, 337, 613
HindII GTYRAC 3 cut(s) 82, 337, 613
HinfI GANTC 8 cut(s) 20, 43, 62, 89, 264, 287, 445, 906
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 4 cut(s) 578, 645, 734, 776
HphI GGTGA 4 cut(s) 169, 202, 397, 760
Hpy166II GTNNAC 6 cut(s) 82, 295, 337, 370, 613, 664
Hpy188I TCNGA 4 cut(s) 364, 456, 525, 690
Hpy188III TCNNGA 9 cut(s) 424, 449, 479, 497, 503, 542, 853, 876, 922
Hpy8I GTNNAC 6 cut(s) 82, 295, 337, 370, 613, 664
HpyAV CCTTC 2 cut(s) 79, 667
HpyCH4III ACNGT 2 cut(s) 353, 867
HpyCH4IV ACGT 2 cut(s) 174, 366
HpyCH4V TGCA 4 cut(s) 183, 305, 583, 598
HpyF3I CTNAG 4 cut(s) 245, 540, 689, 818
HpySE526I ACGT 2 cut(s) 174, 366
Hsp92I GRCGYC 3 cut(s) 195, 570, 972
Hsp92II CATG 2 cut(s) 518, 598
HspAI GCGC 3 cut(s) 57, 561, 928
KroI GCCGGC 1 cut(s) 644
KroNI GCCGGC 1 cut(s) 646
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
LmnI GCTCC 4 cut(s) 169, 426, 544, 653
Lsp1109I GCAGC 5 cut(s) 289, 405, 542, 610, 742
LweI GCATC 1 cut(s) 14
MaeII ACGT 2 cut(s) 174, 366
MaeIII GTNAC 6 cut(s) 175, 208, 215, 271, 353, 748
MalI GATC 8 cut(s) 98, 261, 453, 489, 501, 522, 801, 944
MboI GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
MboII GAAGA 3 cut(s) 545, 850, 868
MflI RGATCY 5 cut(s) 96, 451, 487, 499, 520
MlyI GAGTC 5 cut(s) 14, 37, 56, 83, 273
MmeI TCCRAC 1 cut(s) 387
MroNI GCCGGC 1 cut(s) 644
MseI TTAA 1 cut(s) 612
MslI CAYNNNNRTG 2 cut(s) 132, 935
MspA1I CMGCKG 2 cut(s) 555, 755
MspI CCGG 4 cut(s) 578, 645, 734, 776
MvnI CGCG 9 cut(s) 57, 104, 222, 563, 746, 804, 890, 904, 923
NaeI GCCGGC 1 cut(s) 646
NdeII GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
NgoMIV GCCGGC 1 cut(s) 644
NlaIII CATG 2 cut(s) 518, 598
NlaIV GGNNCC 4 cut(s) 315, 489, 522, 649
NmeAIII GCCGAG 4 cut(s) 278, 427, 877, 976
NmuCI GTSAC 5 cut(s) 175, 208, 215, 271, 748
NruI TCGCGA 1 cut(s) 923
NspI RCATGY 2 cut(s) 518, 598
NspV TTCGAA 1 cut(s) 627
OliI CACNNNNGTG 2 cut(s) 132, 935
PaqCI CACCTGC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 4 cut(s) 38, 259, 378, 881
PdiI GCCGGC 1 cut(s) 646
PfeI GAWTC 3 cut(s) 287, 445, 906
Pfl23II CGTACG 1 cut(s) 885
PflFI GACNNNGTC 1 cut(s) 569
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 5 cut(s) 14, 37, 56, 83, 272
PpsI GAGTC 5 cut(s) 14, 37, 56, 83, 272
PspEI GGTNACC 1 cut(s) 748
PspLI CGTACG 1 cut(s) 885
PspN4I GGNNCC 4 cut(s) 315, 489, 522, 649
PspPI GGNCC 2 cut(s) 313, 781
PstNI CAGNNNCTG 1 cut(s) 604
PsuI RGATCY 5 cut(s) 96, 451, 487, 499, 520
PsyI GACNNNGTC 1 cut(s) 569
PvuI CGATCG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 555
RruI TCGCGA 1 cut(s) 923
RsaI GTAC 4 cut(s) 470, 824, 869, 887
RsaNI GTAC 4 cut(s) 469, 823, 868, 886
RseI CAYNNNNRTG 2 cut(s) 132, 935
SaqAI TTAA 1 cut(s) 612
Sau3AI GATC 8 cut(s) 96, 259, 451, 487, 499, 520, 799, 942
Sau96I GGNCC 2 cut(s) 313, 781
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 5 cut(s) 14, 37, 56, 83, 273
SfaNI GCATC 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 627
SinI GGWCC 2 cut(s) 313, 781
SmiMI CAYNNNNRTG 2 cut(s) 132, 935
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 353, 867
TaiI ACGT 2 cut(s) 177, 369
TaqI TCGA 9 cut(s) 8, 262, 345, 627, 633, 713, 852, 875, 945
TaqII GACCGA 2 cut(s) 301, 395
TatI WGTACW 1 cut(s) 468
TauI GCSGC 7 cut(s) 57, 107, 200, 410, 561, 904, 966
TfiI GAWTC 3 cut(s) 287, 445, 906
Tru1I TTAA 1 cut(s) 612
Tru9I TTAA 1 cut(s) 612
TseFI GTSAC 5 cut(s) 175, 208, 215, 271, 748
TseI GCWGC 5 cut(s) 302, 418, 555, 598, 755
Tsp45I GTSAC 5 cut(s) 175, 208, 215, 271, 748
TspGWI ACGGA 6 cut(s) 280, 387, 480, 784, 947, 969
Tth111I GACNNNGTC 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 313, 781
XceI RCATGY 2 cut(s) 518, 598
XmiI GTMKAC 1 cut(s) 663
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.