Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000981.1

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

27033 .. 28115

Gene Structure 1083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000981.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggcatcgaagctctgcgactcgtgcaaatcggcgacggcgactctgttctgccgagcagactccgctttcctctgtgtaaactgcgacacaaagatccacgcagccaacaagctggcttcgcgccacgcccgggtctggttgtgcgaggtgtgcgagcaggctcccgcccacgtcacgtgcaaggccgacgacgccaccctctgcgtcacgtgcgaccgagaaatccactctgctaaccccctcagccgccggcacgagagagtcccggtggccccgttctacgactcactcaactcggacgactcaaccgccgtcaaatctgatgctgccgtcaacttcctcgacgaccgatacttgtccgacggagacggagacggagagacgactgaggtcagcagagaggaagccgaggctgcttcgtggctgctcccaaatcccaaggatctgaattcggggcagtacgtgttctccgacatggatccttatttggatctggattacgggggagtggatccgaaagctcaaactcaggaggagcagaacagtagtggtactgacggagtggtccctgtgcaaagcaagaccgtccagcctcaaacctttgaaatggagttgccaggatccaagcctttcatctatggctaccatggccactgtttaagccagagtgtatcatcatcatcctctatggatgttagcgtcgtgccagatggcaacatgctgacggacatgtcagatccctacaccaagtcgatcggcgatcagttatcgcatccggcggttcagatttcatcggcggatcgggaagctagggtgttgaggtacagagagaagagaaagaaccgaaagttcgagaagacgattcgttacgcatcgcgaaaagcttatgcggagacgagaccacgaatcaaaggcaggttcgctaagcgcacagaagcggagatcgaagccgaacgtctctgccgctacggcgtcgttccctctttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

330

Amino Acids

36.56

Weight (kDa)

5.57

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	566, 733
Acc36I	ACCTGC	1 cut(s)	909
AccII	CGCG	2 cut(s)	124, 880
AciI	CCGC	9 cut(s)	66, 168, 250, 312, 782, 800, 893, 941, 967
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	1 cut(s)	451
AcvI	CACGTG	2 cut(s)	180, 213
AcyI	GRCGYC	2 cut(s)	195, 975
AfaI	GTAC	3 cut(s)	464, 556, 827
AfiI	CCNNNNNNNGG	2 cut(s)	133, 138
AflIII	ACRYGT	2 cut(s)	465, 732
AgsI	TTSAA	1 cut(s)	608
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	5 cut(s)	13, 115, 524, 812, 887
AluI	AGCT	5 cut(s)	13, 115, 524, 812, 887
Alw26I	GTCTC	6 cut(s)	363, 369, 377, 890, 895, 965
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	186, 273, 652
ApeKI	GCWGC	4 cut(s)	104, 329, 416, 427
ApoI	RAATTY	1 cut(s)	451
AspLEI	GCGC	2 cut(s)	126, 933
AspS9I	GGNCC	2 cut(s)	274, 568
AsuC2I	CCSGG	3 cut(s)	133, 134, 269
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	654
BamHI	GGATCC	3 cut(s)	481, 514, 623
BauI	CACGAG	2 cut(s)	22, 257
BbrPI	CACGTG	2 cut(s)	180, 213
BbsI	GAAGAC	1 cut(s)	866
BbvCI	CCTCAGC	1 cut(s)	245
BbvI	GCAGC	4 cut(s)	116, 316, 403, 414
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	4 cut(s)	54, 299, 317, 988
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	3 cut(s)	133, 134, 269
BcoDI	GTCTC	6 cut(s)	363, 369, 377, 890, 895, 965
BfaI	CTAG	1 cut(s)	813
BfuAI	ACCTGC	1 cut(s)	909
BglI	GCCNNNNNGGC	1 cut(s)	972
BisI	GCNGC	6 cut(s)	105, 250, 330, 417, 428, 967
BlpI	GCTNAGC	1 cut(s)	927
BlsI	GCNGC	6 cut(s)	106, 251, 331, 418, 429, 968
Bme1390I	CCNGG	4 cut(s)	133, 134, 269, 621
Bme18I	GGWCC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	274, 568
BmiI	GGNNCC	6 cut(s)	165, 276, 483, 516, 570, 625
BmrFI	CCNGG	4 cut(s)	133, 134, 269, 621
BmsI	GCATC	4 cut(s)	14, 316, 784, 884
BoxI	GACNNNNGTC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	866
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu1102I	GCTNAGC	1 cut(s)	927
BpuMI	CCSGG	3 cut(s)	133, 134, 269
BsaAI	YACGTR	3 cut(s)	180, 213, 466
BsaHI	GRCGYC	2 cut(s)	195, 975
BsaI	GGTCTC	1 cut(s)	895
BsaJI	CCNNGG	4 cut(s)	132, 411, 441, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 138
Bse118I	RCCGGY	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	4 cut(s)	132, 411, 441, 649
BseGI	GGATG	3 cut(s)	683, 700, 775
BseLI	CCNNNNNNNGG	2 cut(s)	133, 138
BseMII	CTCAG	3 cut(s)	259, 381, 545
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	4 cut(s)	116, 316, 403, 414
Bsh1236I	CGCG	2 cut(s)	124, 880
Bsh1285I	CGRYCG	3 cut(s)	220, 352, 759
BshFI	GGCC	3 cut(s)	188, 275, 654
BsiEI	CGRYCG	3 cut(s)	220, 352, 759
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	4 cut(s)	133, 253, 269, 779
BslFI	GGGAC	2 cut(s)	251, 554
BslI	CCNNNNNNNGG	2 cut(s)	133, 138
BsmAI	GTCTC	6 cut(s)	363, 369, 377, 890, 895, 965
BsmBI	CGTCTC	5 cut(s)	363, 369, 377, 890, 965
BsmFI	GGGAC	2 cut(s)	251, 554
BsnI	GGCC	3 cut(s)	188, 275, 654
Bso31I	GGTCTC	1 cut(s)	895
BsoBI	CYCGRG	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	927
Bsp19I	CCATGG	1 cut(s)	649
Bsp68I	TCGCGA	1 cut(s)	880
BspACI	CCGC	9 cut(s)	66, 168, 250, 312, 782, 800, 893, 941, 967
BspANI	GGCC	3 cut(s)	188, 275, 654
BspCNI	CTCAG	3 cut(s)	258, 382, 544
BspFNI	CGCG	2 cut(s)	124, 880
BspLI	GGNNCC	6 cut(s)	165, 276, 483, 516, 570, 625
BspMI	ACCTGC	1 cut(s)	909
BspTNI	GGTCTC	1 cut(s)	895
BsrFI	RCCGGY	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	252
BssECI	CCNNGG	4 cut(s)	132, 411, 441, 649
BssNI	GRCGYC	2 cut(s)	195, 975
BssSI	CACGAG	2 cut(s)	22, 257
BssT1I	CCWWGG	2 cut(s)	441, 649
Bst2BI	CACGAG	2 cut(s)	22, 257
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	548, 589, 659
Bst6I	CTCTTC	1 cut(s)	830
BstACI	GRCGYC	2 cut(s)	195, 975
BstBAI	YACGTR	3 cut(s)	180, 213, 466
BstC8I	GCNNGC	4 cut(s)	117, 158, 162, 254
BstDEI	CTNAG	4 cut(s)	245, 390, 531, 927
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	3 cut(s)	683, 700, 775
BstFNI	CGCG	2 cut(s)	124, 880
BstHHI	GCGC	2 cut(s)	126, 933
BstMAI	GTCTC	6 cut(s)	363, 369, 377, 890, 895, 965
BstMCI	CGRYCG	3 cut(s)	220, 352, 759
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 65, 121, 153, 194, 213, 416, 651, 972
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	2 cut(s)	724, 736
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSCI	CCNGG	4 cut(s)	131, 132, 267, 619
BstUI	CGCG	2 cut(s)	124, 880
BstV1I	GCAGC	4 cut(s)	116, 316, 403, 414
BstV2I	GAAGAC	1 cut(s)	866
BstX2I	RGATCY	7 cut(s)	96, 445, 481, 493, 514, 623, 739
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	7 cut(s)	96, 445, 481, 493, 514, 623, 739
BsuRI	GGCC	3 cut(s)	188, 275, 654
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	1 cut(s)	861
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	683, 700, 775
BtsIMutI	CAGTG	1 cut(s)	655
BtuMI	TCGCGA	1 cut(s)	880
BveI	ACCTGC	1 cut(s)	909
Cac8I	GCNNGC	4 cut(s)	117, 158, 162, 254
CfoI	GCGC	2 cut(s)	126, 933
Cfr10I	RCCGGY	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	274, 568
Cfr9I	CCCGGG	1 cut(s)	132
CseI	GACGC	4 cut(s)	196, 203, 691, 964
Csp6I	GTAC	3 cut(s)	463, 555, 826
CviAII	CATG	4 cut(s)	478, 650, 721, 733
CviQI	GTAC	3 cut(s)	463, 555, 826
DdeI	CTNAG	4 cut(s)	245, 390, 531, 927
DrdI	GACNNNNNNGTC	2 cut(s)	566, 733
DseDI	GACNNNNNNGTC	2 cut(s)	566, 733
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
EciI	GGCGGA	1 cut(s)	815
Eco130I	CCWWGG	2 cut(s)	441, 649
Eco31I	GGTCTC	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	568
Eco72I	CACGTG	2 cut(s)	180, 213
Eco88I	CYCGRG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	441, 649
ErhI	CCWWGG	2 cut(s)	441, 649
Esp3I	CGTCTC	5 cut(s)	363, 369, 377, 890, 965
FaeI	CATG	4 cut(s)	481, 653, 724, 736
FaiI	YATR	7 cut(s)	479, 642, 651, 692, 722, 734, 891
FaqI	GGGAC	2 cut(s)	251, 554
FatI	CATG	4 cut(s)	477, 649, 720, 732
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	6 cut(s)	105, 250, 330, 417, 428, 967
FokI	GGATG	3 cut(s)	670, 707, 762
Fsp4HI	GCNGC	6 cut(s)	105, 250, 330, 417, 428, 967
FspBI	CTAG	1 cut(s)	813
GlaI	GCGC	2 cut(s)	125, 932
GluI	GCNGC	6 cut(s)	105, 250, 330, 417, 428, 967
HaeIII	GGCC	3 cut(s)	188, 275, 654
HapII	CCGG	4 cut(s)	133, 253, 269, 779
HgaI	GACGC	4 cut(s)	196, 203, 691, 964
HhaI	GCGC	2 cut(s)	126, 933
Hin1I	GRCGYC	2 cut(s)	195, 975
Hin1II	CATG	4 cut(s)	481, 653, 724, 736
Hin6I	GCGC	2 cut(s)	124, 931
HinP1I	GCGC	2 cut(s)	124, 931
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	8 cut(s)	20, 43, 62, 264, 287, 305, 865, 909
HpaII	CCGG	4 cut(s)	133, 253, 269, 779
Hpy166II	GTNNAC	2 cut(s)	82, 337
Hpy188I	TCNGA	8 cut(s)	301, 325, 364, 450, 475, 519, 739, 789
Hpy188III	TCNNGA	5 cut(s)	497, 533, 806, 856, 879
Hpy8I	GTNNAC	2 cut(s)	82, 337
Hpy99I	CGWCG	7 cut(s)	40, 194, 197, 350, 368, 707, 980
HpyCH4III	ACNGT	3 cut(s)	548, 589, 659
HpyCH4IV	ACGT	5 cut(s)	174, 179, 212, 465, 958
HpyCH4V	TGCA	3 cut(s)	27, 183, 577
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 65, 121, 153, 194, 213, 416, 651, 972
HpyF3I	CTNAG	4 cut(s)	245, 390, 531, 927
HpySE526I	ACGT	5 cut(s)	174, 179, 212, 465, 958
Hsp92I	GRCGYC	2 cut(s)	195, 975
Hsp92II	CATG	4 cut(s)	481, 653, 724, 736
HspAI	GCGC	2 cut(s)	124, 931
KroI	GCCGGC	1 cut(s)	252
KroNI	GCCGGC	1 cut(s)	254
LmnI	GCTCC	3 cut(s)	169, 435, 538
Lsp1109I	GCAGC	4 cut(s)	116, 316, 403, 414
LweI	GCATC	4 cut(s)	14, 316, 784, 884
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	5 cut(s)	174, 179, 212, 465, 958
MaeIII	GTNAC	3 cut(s)	175, 208, 869
MboII	GAAGA	2 cut(s)	847, 871
MflI	RGATCY	7 cut(s)	96, 445, 481, 493, 514, 623, 739
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	1 cut(s)	451
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	6 cut(s)	14, 37, 56, 273, 281, 299
MmeI	TCCRAC	2 cut(s)	387, 498
Mox20I	TGGCCA	1 cut(s)	654
MroNI	GCCGGC	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	1 cut(s)	662
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	4 cut(s)	133, 253, 269, 779
MspR9I	CCNGG	4 cut(s)	133, 134, 269, 621
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	2 cut(s)	124, 880
MwoI	GCNNNNNNNGC	9 cut(s)	24, 65, 121, 153, 194, 213, 416, 651, 972
NaeI	GCCGGC	1 cut(s)	254
NciI	CCSGG	3 cut(s)	133, 134, 269
NcoI	CCATGG	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	252
NlaIII	CATG	4 cut(s)	481, 653, 724, 736
NlaIV	GGNNCC	6 cut(s)	165, 276, 483, 516, 570, 625
NmeAIII	GCCGAG	2 cut(s)	80, 436
NmuCI	GTSAC	2 cut(s)	175, 208
NruI	TCGCGA	1 cut(s)	880
NspI	RCATGY	2 cut(s)	724, 736
PciI	ACATGT	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 471
PdiI	GCCGGC	1 cut(s)	254
PfeI	GAWTC	2 cut(s)	865, 909
PkrI	GCNGC	6 cut(s)	106, 251, 331, 418, 429, 968
Ple19I	CGATCG	1 cut(s)	759
PleI	GAGTC	6 cut(s)	14, 37, 56, 272, 281, 299
PmaCI	CACGTG	2 cut(s)	180, 213
PmlI	CACGTG	2 cut(s)	180, 213
PpsI	GAGTC	6 cut(s)	14, 37, 56, 272, 281, 299
Ppu21I	YACGTR	3 cut(s)	180, 213, 466
PscI	ACATGT	1 cut(s)	732
PshAI	GACNNNNGTC	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	619
PspCI	CACGTG	2 cut(s)	180, 213
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	6 cut(s)	165, 276, 483, 516, 570, 625
PspPI	GGNCC	2 cut(s)	274, 568
PsuI	RGATCY	7 cut(s)	96, 445, 481, 493, 514, 623, 739
PvuI	CGATCG	1 cut(s)	759
RruI	TCGCGA	1 cut(s)	880
RsaI	GTAC	3 cut(s)	464, 556, 827
RsaNI	GTAC	3 cut(s)	463, 555, 826
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	6 cut(s)	105, 250, 330, 417, 428, 967
Sau96I	GGNCC	2 cut(s)	274, 568
SchI	GAGTC	6 cut(s)	14, 37, 56, 273, 281, 299
ScrFI	CCNGG	4 cut(s)	133, 134, 269, 621
SfaNI	GCATC	4 cut(s)	14, 316, 784, 884
SinI	GGWCC	1 cut(s)	568
SmaI	CCCGGG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	451
SsiI	CCGC	9 cut(s)	66, 168, 250, 312, 782, 800, 893, 941, 967
SspMI	CTAG	1 cut(s)	813
StyD4I	CCNGG	4 cut(s)	131, 132, 267, 619
StyI	CCWWGG	2 cut(s)	441, 649
TaaI	ACNGT	3 cut(s)	548, 589, 659
TaiI	ACGT	5 cut(s)	177, 182, 215, 468, 961
TaqI	TCGA	5 cut(s)	8, 345, 755, 855, 948
TaqII	GACCGA	2 cut(s)	234, 366
TasI	AATT	1 cut(s)	451
TauI	GCSGC	2 cut(s)	252, 969
TfiI	GAWTC	2 cut(s)	865, 909
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	1 cut(s)	662
TseFI	GTSAC	2 cut(s)	175, 208
TseI	GCWGC	4 cut(s)	104, 329, 416, 427
Tsp45I	GTSAC	2 cut(s)	175, 208
TspDTI	ATGAA	2 cut(s)	625, 783
TspGWI	ACGGA	5 cut(s)	381, 387, 393, 576, 743
TspMI	CCCGGG	1 cut(s)	132
TspRI	CASTG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	1 cut(s)	451
XceI	RCATGY	2 cut(s)	724, 736
XmaI	CCCGGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.