Rroxscaffold_7G00169050

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
9753088 .. 9754510
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169050.1

Sequence Viewer

Length: 990 bp
ATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAACTGCGACACAAAGATCCACGCAGCCAACAAGCTGGCTTCCCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTGGCCCCGTTCTACGACTCACTGAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTTGATGACCGATACTTGTCCGACGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAATACGTGTTCTCCGACATGGATCCGTATTTGGATCTGGATTACGGGGGAGTGGATCCGAAAGCTCAAACTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGGTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTAACGCATCCGGCGGTTCAGATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGAAGCCGAACGTCTCTGCCGCTACGGCGTCGTTCCCACTTTTTAG

Protein Analysis

329

Amino Acids

36.49

Weight (kDa)

5.58

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 42 3.3e-07 B-box zinc finger
zf-B_box PF00643 46 - 91 7.6e-07 B-box zinc finger
CCT PF06203 268 - 310 4.9e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 566, 730
Acc36I ACCTGC 1 cut(s) 906
AccII CGCG 1 cut(s) 877
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 1 cut(s) 451
AcvI CACGTG 2 cut(s) 180, 213
AcyI GRCGYC 2 cut(s) 195, 972
AfaI GTAC 2 cut(s) 556, 824
AfiI CCNNNNNNNGG 2 cut(s) 133, 138
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 1 cut(s) 608
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 6 cut(s) 13, 115, 524, 603, 809, 884
AluI AGCT 6 cut(s) 13, 115, 524, 603, 809, 884
Alw26I GTCTC 6 cut(s) 363, 369, 377, 887, 892, 962
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 3 cut(s) 186, 273, 652
ApeKI GCWGC 4 cut(s) 104, 329, 416, 427
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 1 cut(s) 930
AspS9I GGNCC 2 cut(s) 274, 568
AsuC2I CCSGG 3 cut(s) 133, 134, 269
AsuHPI GGTGA 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 568
AxyI CCTNAGG 1 cut(s) 441
BalI TGGCCA 1 cut(s) 654
BamHI GGATCC 3 cut(s) 481, 514, 623
BauI CACGAG 2 cut(s) 22, 257
BbrPI CACGTG 2 cut(s) 180, 213
BbsI GAAGAC 1 cut(s) 863
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 116, 316, 403, 414
BccI CCATC 1 cut(s) 704
BceAI ACGGC 4 cut(s) 54, 299, 317, 985
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 3 cut(s) 133, 134, 269
BcoDI GTCTC 6 cut(s) 363, 369, 377, 887, 892, 962
BfaI CTAG 1 cut(s) 810
BfuAI ACCTGC 1 cut(s) 906
BglI GCCNNNNNGGC 1 cut(s) 969
BisI GCNGC 6 cut(s) 105, 250, 330, 417, 428, 964
BlpI GCTNAGC 1 cut(s) 924
BlsI GCNGC 6 cut(s) 106, 251, 331, 418, 429, 965
Bme1390I CCNGG 4 cut(s) 133, 134, 269, 621
Bme18I GGWCC 1 cut(s) 568
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 274, 568
BmiI GGNNCC 6 cut(s) 165, 276, 483, 516, 570, 625
BmrFI CCNGG 4 cut(s) 133, 134, 269, 621
BmsI GCATC 4 cut(s) 14, 316, 781, 881
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 863
Bpu10I CCTNAGC 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 924
BpuMI CCSGG 3 cut(s) 133, 134, 269
BsaAI YACGTR 3 cut(s) 180, 213, 466
BsaHI GRCGYC 2 cut(s) 195, 972
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 3 cut(s) 132, 411, 649
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 138
Bse118I RCCGGY 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 3 cut(s) 132, 411, 649
BseGI GGATG 3 cut(s) 680, 697, 772
BseLI CCNNNNNNNGG 2 cut(s) 133, 138
BseMII CTCAG 3 cut(s) 259, 381, 545
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 4 cut(s) 116, 316, 403, 414
Bsh1236I CGCG 1 cut(s) 877
Bsh1285I CGRYCG 2 cut(s) 220, 756
BshFI GGCC 3 cut(s) 188, 275, 654
BsiEI CGRYCG 2 cut(s) 220, 756
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 133, 253, 269, 776
BslFI GGGAC 2 cut(s) 251, 554
BslI CCNNNNNNNGG 2 cut(s) 133, 138
BsmAI GTCTC 6 cut(s) 363, 369, 377, 887, 892, 962
BsmBI CGTCTC 5 cut(s) 363, 369, 377, 887, 962
BsmFI GGGAC 2 cut(s) 251, 554
BsnI GGCC 3 cut(s) 188, 275, 654
Bso31I GGTCTC 1 cut(s) 892
BsoBI CYCGRG 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 924
Bsp19I CCATGG 1 cut(s) 649
Bsp68I TCGCGA 1 cut(s) 877
BspANI GGCC 3 cut(s) 188, 275, 654
BspCNI CTCAG 3 cut(s) 258, 382, 544
BspFNI CGCG 1 cut(s) 877
BspLI GGNNCC 6 cut(s) 165, 276, 483, 516, 570, 625
BspMI ACCTGC 1 cut(s) 906
BspTNI GGTCTC 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 132, 411, 649
BssNI GRCGYC 2 cut(s) 195, 972
BssSI CACGAG 2 cut(s) 22, 257
BssT1I CCWWGG 1 cut(s) 649
Bst2BI CACGAG 2 cut(s) 22, 257
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 3 cut(s) 548, 589, 659
Bst6I CTCTTC 1 cut(s) 827
BstACI GRCGYC 2 cut(s) 195, 972
BstBAI YACGTR 3 cut(s) 180, 213, 466
BstC8I GCNNGC 4 cut(s) 117, 158, 162, 254
BstDEI CTNAG 5 cut(s) 245, 390, 441, 531, 924
BstDSI CCRYGG 1 cut(s) 649
BstF5I GGATG 3 cut(s) 680, 697, 772
BstFNI CGCG 1 cut(s) 877
BstHHI GCGC 1 cut(s) 930
BstMAI GTCTC 6 cut(s) 363, 369, 377, 887, 892, 962
BstMCI CGRYCG 2 cut(s) 220, 756
BstMWI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 416, 651, 969
BstNI CCWGG 1 cut(s) 621
BstPAI GACNNNNGTC 1 cut(s) 392
BstSCI CCNGG 4 cut(s) 131, 132, 267, 619
BstUI CGCG 1 cut(s) 877
BstV1I GCAGC 4 cut(s) 116, 316, 403, 414
BstV2I GAAGAC 1 cut(s) 863
BstX2I RGATCY 7 cut(s) 96, 445, 481, 493, 514, 623, 736
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 7 cut(s) 96, 445, 481, 493, 514, 623, 736
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 3 cut(s) 188, 275, 654
BtgI CCRYGG 1 cut(s) 649
BtgZI GCGATG 1 cut(s) 858
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 680, 697, 772
BtsIMutI CAGTG 2 cut(s) 290, 655
BtuMI TCGCGA 1 cut(s) 877
BveI ACCTGC 1 cut(s) 906
Cac8I GCNNGC 4 cut(s) 117, 158, 162, 254
CfoI GCGC 1 cut(s) 930
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 274, 568
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 4 cut(s) 196, 203, 688, 961
Csp6I GTAC 2 cut(s) 555, 823
CviAII CATG 3 cut(s) 478, 650, 718
CviQI GTAC 2 cut(s) 555, 823
DdeI CTNAG 5 cut(s) 245, 390, 441, 531, 924
DrdI GACNNNNNNGTC 2 cut(s) 566, 730
DseDI GACNNNNNNGTC 2 cut(s) 566, 730
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 827
EarI CTCTTC 1 cut(s) 827
EciI GGCGGA 1 cut(s) 812
Eco130I CCWWGG 1 cut(s) 649
Eco31I GGTCTC 1 cut(s) 892
Eco47I GGWCC 1 cut(s) 568
Eco72I CACGTG 2 cut(s) 180, 213
Eco81I CCTNAGG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 649
Esp3I CGTCTC 5 cut(s) 363, 369, 377, 887, 962
FaeI CATG 3 cut(s) 481, 653, 721
FaiI YATR 6 cut(s) 479, 642, 651, 689, 719, 888
FaqI GGGAC 2 cut(s) 251, 554
FatI CATG 3 cut(s) 477, 649, 717
FauI CCCGC 2 cut(s) 131, 175
Fnu4HI GCNGC 6 cut(s) 105, 250, 330, 417, 428, 964
FokI GGATG 3 cut(s) 667, 704, 759
Fsp4HI GCNGC 6 cut(s) 105, 250, 330, 417, 428, 964
FspBI CTAG 1 cut(s) 810
GlaI GCGC 1 cut(s) 929
GluI GCNGC 6 cut(s) 105, 250, 330, 417, 428, 964
HaeIII GGCC 3 cut(s) 188, 275, 654
HapII CCGG 4 cut(s) 133, 253, 269, 776
HgaI GACGC 4 cut(s) 196, 203, 688, 961
HhaI GCGC 1 cut(s) 930
Hin1I GRCGYC 2 cut(s) 195, 972
Hin1II CATG 3 cut(s) 481, 653, 721
Hin6I GCGC 1 cut(s) 928
HinP1I GCGC 1 cut(s) 928
HincII GTYRAC 2 cut(s) 337, 768
HindII GTYRAC 2 cut(s) 337, 768
HindIII AAGCTT 2 cut(s) 601, 882
HinfI GANTC 8 cut(s) 20, 43, 62, 264, 287, 305, 862, 906
HpaI GTTAAC 1 cut(s) 768
HpaII CCGG 4 cut(s) 133, 253, 269, 776
HphI GGTGA 1 cut(s) 733
Hpy166II GTNNAC 3 cut(s) 82, 337, 768
Hpy188I TCNGA 8 cut(s) 301, 325, 364, 450, 475, 519, 736, 786
Hpy188III TCNNGA 5 cut(s) 497, 533, 803, 853, 876
Hpy8I GTNNAC 3 cut(s) 82, 337, 768
Hpy99I CGWCG 6 cut(s) 40, 194, 197, 368, 704, 977
HpyCH4III ACNGT 3 cut(s) 548, 589, 659
HpyCH4IV ACGT 5 cut(s) 174, 179, 212, 465, 955
HpyCH4V TGCA 3 cut(s) 27, 183, 577
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 416, 651, 969
HpyF3I CTNAG 5 cut(s) 245, 390, 441, 531, 924
HpySE526I ACGT 5 cut(s) 174, 179, 212, 465, 955
Hsp92I GRCGYC 2 cut(s) 195, 972
Hsp92II CATG 3 cut(s) 481, 653, 721
HspAI GCGC 1 cut(s) 928
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
KspAI GTTAAC 1 cut(s) 768
LmnI GCTCC 3 cut(s) 169, 435, 538
Lsp1109I GCAGC 4 cut(s) 116, 316, 403, 414
LweI GCATC 4 cut(s) 14, 316, 781, 881
MaeI CTAG 1 cut(s) 810
MaeII ACGT 5 cut(s) 174, 179, 212, 465, 955
MaeIII GTNAC 4 cut(s) 175, 208, 721, 866
MboII GAAGA 2 cut(s) 844, 868
MflI RGATCY 7 cut(s) 96, 445, 481, 493, 514, 623, 736
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 1 cut(s) 451
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 6 cut(s) 14, 37, 56, 273, 281, 299
MmeI TCCRAC 2 cut(s) 387, 498
Mox20I TGGCCA 1 cut(s) 654
MroNI GCCGGC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 654
MseI TTAA 2 cut(s) 662, 767
Msp20I TGGCCA 1 cut(s) 654
MspI CCGG 4 cut(s) 133, 253, 269, 776
MspR9I CCNGG 4 cut(s) 133, 134, 269, 621
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 1 cut(s) 877
MwoI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 416, 651, 969
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 3 cut(s) 133, 134, 269
NcoI CCATGG 1 cut(s) 649
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 481, 653, 721
NlaIV GGNNCC 6 cut(s) 165, 276, 483, 516, 570, 625
NmeAIII GCCGAG 2 cut(s) 80, 436
NmuCI GTSAC 3 cut(s) 175, 208, 721
NruI TCGCGA 1 cut(s) 877
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 471
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 862, 906
PkrI GCNGC 6 cut(s) 106, 251, 331, 418, 429, 965
Ple19I CGATCG 1 cut(s) 756
PleI GAGTC 6 cut(s) 14, 37, 56, 272, 281, 299
PmaCI CACGTG 2 cut(s) 180, 213
PmlI CACGTG 2 cut(s) 180, 213
PpsI GAGTC 6 cut(s) 14, 37, 56, 272, 281, 299
Ppu21I YACGTR 3 cut(s) 180, 213, 466
PshAI GACNNNNGTC 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 619
PspCI CACGTG 2 cut(s) 180, 213
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 6 cut(s) 165, 276, 483, 516, 570, 625
PspPI GGNCC 2 cut(s) 274, 568
PsuI RGATCY 7 cut(s) 96, 445, 481, 493, 514, 623, 736
PvuI CGATCG 1 cut(s) 756
RruI TCGCGA 1 cut(s) 877
RsaI GTAC 2 cut(s) 556, 824
RsaNI GTAC 2 cut(s) 555, 823
SaqAI TTAA 2 cut(s) 662, 767
SatI GCNGC 6 cut(s) 105, 250, 330, 417, 428, 964
Sau96I GGNCC 2 cut(s) 274, 568
SchI GAGTC 6 cut(s) 14, 37, 56, 273, 281, 299
ScrFI CCNGG 4 cut(s) 133, 134, 269, 621
SfaNI GCATC 4 cut(s) 14, 316, 781, 881
SinI GGWCC 1 cut(s) 568
SmaI CCCGGG 1 cut(s) 134
Sse9I AATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 810
StyD4I CCNGG 4 cut(s) 131, 132, 267, 619
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 3 cut(s) 548, 589, 659
TaiI ACGT 5 cut(s) 177, 182, 215, 468, 958
TaqI TCGA 4 cut(s) 8, 752, 852, 945
TaqII GACCGA 2 cut(s) 234, 366
TasI AATT 1 cut(s) 451
TauI GCSGC 2 cut(s) 252, 966
TfiI GAWTC 2 cut(s) 862, 906
Tru1I TTAA 2 cut(s) 662, 767
Tru9I TTAA 2 cut(s) 662, 767
TscAI CASTG 2 cut(s) 297, 662
TseFI GTSAC 3 cut(s) 175, 208, 721
TseI GCWGC 4 cut(s) 104, 329, 416, 427
Tsp45I GTSAC 3 cut(s) 175, 208, 721
TspDTI ATGAA 2 cut(s) 625, 780
TspGWI ACGGA 6 cut(s) 381, 387, 393, 474, 576, 740
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 2 cut(s) 297, 662
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 1 cut(s) 451
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.