RchiOBHm_Chr6g0299051

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
60282386 .. 60283925
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26850

Sequence Viewer

Length: 1206 bp
ATGTTTCACTCGGGGCAATCCCCCCATCTTTTGGCTAAGCTTCTTCCTCGTGTCACTCCACCATTGGCTCTTCCTTGGATATCTGTGGCCCACCAGATAGACAGACACACATCCATAACACAAAATGAAACGTTGAGAGAGAGAGAGAGAGAGAGAGAAAAGAGAGAGACACAATTTTACAGTGCAGGAAACCCGGTGAGCTTAGAGCGCGCTATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAACTGCGACACAAAGATCCACGCGGCCAACAAGCTGGCTTCGCGCCACGCCCGGGTCTGGCTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTGGCCCCGTTCTACGACTCACTCAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTCGACGACCGATACTTGTCCGACGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAGTACGTGTTCTCCGACATGGATCCGTATTTGGATCTGGATTACGGGGGAGTGGATCCGAAAGCTCAAACTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAACCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTCCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCATCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAGATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGAAGCCGAACGTCTCTGCCGCTACGGCGTCGTTCCCTCTTTTTAG

Protein Analysis

401

Amino Acids

44.73

Weight (kDa)

6.09

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 75 - 113 4.3e-07 B-box zinc finger
zf-B_box PF00643 117 - 162 1e-06 B-box zinc finger
CCT PF06203 340 - 382 6.5e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 779, 946
Acc36I ACCTGC 1 cut(s) 1122
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 4 cut(s) 210, 317, 337, 1093
AclI AACGTT 1 cut(s) 131
AcoI YGGCCR 2 cut(s) 318, 865
AcsI RAATTY 1 cut(s) 664
AcvI CACGTG 2 cut(s) 393, 426
AcyI GRCGYC 2 cut(s) 408, 1188
AfaI GTAC 3 cut(s) 677, 769, 1040
AfiI CCNNNNNNNGG 3 cut(s) 31, 346, 351
AflIII ACRYGT 1 cut(s) 678
AgsI TTSAA 1 cut(s) 821
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 1 cut(s) 832
AluBI AGCT 7 cut(s) 40, 201, 226, 328, 737, 1025, 1100
AluI AGCT 7 cut(s) 40, 201, 226, 328, 737, 1025, 1100
Alw26I GTCTC 7 cut(s) 161, 576, 582, 590, 1103, 1108, 1178
Ama87I CYCGRG 2 cut(s) 10, 345
AoxI GGCC 5 cut(s) 87, 318, 399, 486, 865
ApeKI GCWGC 3 cut(s) 542, 629, 640
ApoI RAATTY 1 cut(s) 664
AspLEI GCGC 4 cut(s) 210, 212, 339, 1146
AspS9I GGNCC 3 cut(s) 88, 487, 781
AsuC2I CCSGG 4 cut(s) 194, 346, 347, 482
AsuHPI GGTGA 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 10, 345
AvaII GGWCC 1 cut(s) 781
AxyI CCTNAGG 1 cut(s) 654
BalI TGGCCA 1 cut(s) 867
BamHI GGATCC 3 cut(s) 694, 727, 836
BauI CACGAG 3 cut(s) 48, 235, 470
BbrPI CACGTG 2 cut(s) 393, 426
BbsI GAAGAC 1 cut(s) 1079
BbvCI CCTCAGC 1 cut(s) 458
BbvI GCAGC 3 cut(s) 529, 616, 627
BccI CCATC 3 cut(s) 33, 857, 920
BceAI ACGGC 4 cut(s) 267, 512, 530, 1201
BciT130I CCWGG 1 cut(s) 834
BcnI CCSGG 4 cut(s) 194, 346, 347, 482
BcoDI GTCTC 7 cut(s) 161, 576, 582, 590, 1103, 1108, 1178
BfaI CTAG 1 cut(s) 1026
BfuAI ACCTGC 1 cut(s) 1122
BglI GCCNNNNNGGC 1 cut(s) 1185
BisI GCNGC 6 cut(s) 318, 463, 543, 630, 641, 1180
BlpI GCTNAGC 2 cut(s) 36, 1140
BlsI GCNGC 6 cut(s) 319, 464, 544, 631, 642, 1181
Bme1390I CCNGG 5 cut(s) 194, 346, 347, 482, 834
Bme18I GGWCC 1 cut(s) 781
BmeT110I CYCGRG 2 cut(s) 10, 345
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 88, 487, 781
BmiI GGNNCC 6 cut(s) 378, 489, 696, 729, 783, 838
BmrFI CCNGG 5 cut(s) 194, 346, 347, 482, 834
BmsI GCATC 4 cut(s) 227, 529, 997, 1097
BoxI GACNNNNGTC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 1079
Bpu10I CCTNAGC 1 cut(s) 458
Bpu1102I GCTNAGC 2 cut(s) 36, 1140
BpuMI CCSGG 4 cut(s) 194, 346, 347, 482
BsaAI YACGTR 3 cut(s) 393, 426, 679
BsaHI GRCGYC 2 cut(s) 408, 1188
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 4 cut(s) 74, 345, 624, 862
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 346, 351
Bse118I RCCGGY 1 cut(s) 465
Bse21I CCTNAGG 1 cut(s) 654
BseBI CCWGG 1 cut(s) 834
BseDI CCNNGG 4 cut(s) 74, 345, 624, 862
BseGI GGATG 4 cut(s) 110, 896, 913, 988
BseLI CCNNNNNNNGG 3 cut(s) 31, 346, 351
BseMII CTCAG 3 cut(s) 472, 594, 758
BsePI GCGCGC 1 cut(s) 208
BseRI GAGGAG 1 cut(s) 764
BseXI GCAGC 3 cut(s) 529, 616, 627
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 4 cut(s) 210, 317, 337, 1093
Bsh1285I CGRYCG 3 cut(s) 433, 565, 972
BshFI GGCC 5 cut(s) 89, 320, 401, 488, 867
BsiEI CGRYCG 3 cut(s) 433, 565, 972
BsiHKCI CYCGRG 2 cut(s) 10, 345
BsiSI CCGG 5 cut(s) 194, 346, 466, 482, 992
BslFI GGGAC 2 cut(s) 464, 767
BslI CCNNNNNNNGG 3 cut(s) 31, 346, 351
BsmAI GTCTC 7 cut(s) 161, 576, 582, 590, 1103, 1108, 1178
BsmBI CGTCTC 5 cut(s) 576, 582, 590, 1103, 1178
BsmFI GGGAC 2 cut(s) 464, 767
BsnI GGCC 5 cut(s) 89, 320, 401, 488, 867
Bso31I GGTCTC 1 cut(s) 1108
BsoBI CYCGRG 2 cut(s) 10, 345
Bsp1720I GCTNAGC 2 cut(s) 36, 1140
Bsp19I CCATGG 1 cut(s) 862
Bsp68I TCGCGA 1 cut(s) 1093
BspANI GGCC 5 cut(s) 89, 320, 401, 488, 867
BspCNI CTCAG 3 cut(s) 471, 595, 757
BspFNI CGCG 4 cut(s) 210, 317, 337, 1093
BspLI GGNNCC 6 cut(s) 378, 489, 696, 729, 783, 838
BspMI ACCTGC 1 cut(s) 1122
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 1108
BsrFI RCCGGY 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 4 cut(s) 74, 345, 624, 862
BssHII GCGCGC 1 cut(s) 208
BssNI GRCGYC 2 cut(s) 408, 1188
BssSI CACGAG 3 cut(s) 48, 235, 470
BssT1I CCWWGG 2 cut(s) 74, 862
Bst2BI CACGAG 3 cut(s) 48, 235, 470
Bst2UI CCWGG 1 cut(s) 834
Bst4CI ACNGT 4 cut(s) 182, 761, 802, 872
Bst6I CTCTTC 2 cut(s) 75, 1043
BstACI GRCGYC 2 cut(s) 408, 1188
BstBAI YACGTR 3 cut(s) 393, 426, 679
BstC8I GCNNGC 5 cut(s) 210, 330, 371, 375, 467
BstDEI CTNAG 7 cut(s) 36, 202, 458, 603, 654, 744, 1140
BstDSI CCRYGG 1 cut(s) 862
BstF5I GGATG 4 cut(s) 110, 896, 913, 988
BstFNI CGCG 4 cut(s) 210, 317, 337, 1093
BstHHI GCGC 4 cut(s) 210, 212, 339, 1146
BstMAI GTCTC 7 cut(s) 161, 576, 582, 590, 1103, 1108, 1178
BstMCI CGRYCG 3 cut(s) 433, 565, 972
BstNI CCWGG 1 cut(s) 834
BstNSI RCATGY 1 cut(s) 937
BstPAI GACNNNNGTC 1 cut(s) 605
BstSCI CCNGG 5 cut(s) 192, 344, 345, 480, 832
BstUI CGCG 4 cut(s) 210, 317, 337, 1093
BstV1I GCAGC 3 cut(s) 529, 616, 627
BstV2I GAAGAC 1 cut(s) 1079
BstX2I RGATCY 7 cut(s) 309, 658, 694, 706, 727, 836, 952
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 7 cut(s) 309, 658, 694, 706, 727, 836, 952
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 5 cut(s) 89, 320, 401, 488, 867
BtgI CCRYGG 1 cut(s) 862
BtgZI GCGATG 1 cut(s) 1074
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 4 cut(s) 110, 896, 913, 988
BtsIMutI CAGTG 2 cut(s) 187, 868
BtuMI TCGCGA 1 cut(s) 1093
BveI ACCTGC 1 cut(s) 1122
Cac8I GCNNGC 5 cut(s) 210, 330, 371, 375, 467
CfoI GCGC 4 cut(s) 210, 212, 339, 1146
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 88, 487, 781
Cfr9I CCCGGG 1 cut(s) 345
CseI GACGC 4 cut(s) 409, 416, 904, 1177
Csp6I GTAC 3 cut(s) 676, 768, 1039
CviAII CATG 3 cut(s) 691, 863, 934
CviQI GTAC 3 cut(s) 676, 768, 1039
DdeI CTNAG 7 cut(s) 36, 202, 458, 603, 654, 744, 1140
DrdI GACNNNNNNGTC 2 cut(s) 779, 946
DseDI GACNNNNNNGTC 2 cut(s) 779, 946
EaeI YGGCCR 2 cut(s) 318, 865
Eam1104I CTCTTC 2 cut(s) 75, 1043
EarI CTCTTC 2 cut(s) 75, 1043
EciI GGCGGA 1 cut(s) 1028
Eco130I CCWWGG 2 cut(s) 74, 862
Eco31I GGTCTC 1 cut(s) 1108
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 781
Eco72I CACGTG 2 cut(s) 393, 426
Eco81I CCTNAGG 1 cut(s) 654
Eco88I CYCGRG 2 cut(s) 10, 345
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 832
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 74, 862
ErhI CCWWGG 2 cut(s) 74, 862
Esp3I CGTCTC 5 cut(s) 576, 582, 590, 1103, 1178
FaeI CATG 3 cut(s) 694, 866, 937
FaiI YATR 8 cut(s) 116, 215, 692, 855, 864, 905, 935, 1104
FaqI GGGAC 2 cut(s) 464, 767
FatI CATG 3 cut(s) 690, 862, 933
FauI CCCGC 1 cut(s) 388
Fnu4HI GCNGC 6 cut(s) 318, 463, 543, 630, 641, 1180
FokI GGATG 4 cut(s) 97, 883, 920, 975
Fsp4HI GCNGC 6 cut(s) 318, 463, 543, 630, 641, 1180
FspBI CTAG 1 cut(s) 1026
GlaI GCGC 4 cut(s) 209, 211, 338, 1145
GluI GCNGC 6 cut(s) 318, 463, 543, 630, 641, 1180
HaeIII GGCC 5 cut(s) 89, 320, 401, 488, 867
HapII CCGG 5 cut(s) 194, 346, 466, 482, 992
HgaI GACGC 4 cut(s) 409, 416, 904, 1177
HhaI GCGC 4 cut(s) 210, 212, 339, 1146
Hin1I GRCGYC 2 cut(s) 408, 1188
Hin1II CATG 3 cut(s) 694, 866, 937
Hin6I GCGC 4 cut(s) 208, 210, 337, 1144
HinP1I GCGC 4 cut(s) 208, 210, 337, 1144
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HindIII AAGCTT 2 cut(s) 38, 1098
HinfI GANTC 8 cut(s) 233, 256, 275, 477, 500, 518, 1078, 1122
HpaII CCGG 5 cut(s) 194, 346, 466, 482, 992
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 2 cut(s) 295, 550
Hpy188I TCNGA 8 cut(s) 514, 538, 577, 663, 688, 732, 952, 1002
Hpy188III TCNNGA 5 cut(s) 710, 746, 1019, 1069, 1092
Hpy8I GTNNAC 2 cut(s) 295, 550
Hpy99I CGWCG 7 cut(s) 253, 407, 410, 563, 581, 920, 1193
HpyAV CCTTC 1 cut(s) 855
HpyCH4III ACNGT 4 cut(s) 182, 761, 802, 872
HpyCH4IV ACGT 6 cut(s) 131, 387, 392, 425, 678, 1171
HpyCH4V TGCA 4 cut(s) 185, 240, 396, 790
HpyF3I CTNAG 7 cut(s) 36, 202, 458, 603, 654, 744, 1140
HpySE526I ACGT 6 cut(s) 131, 387, 392, 425, 678, 1171
Hsp92I GRCGYC 2 cut(s) 408, 1188
Hsp92II CATG 3 cut(s) 694, 866, 937
HspAI GCGC 4 cut(s) 208, 210, 337, 1144
KroI GCCGGC 1 cut(s) 465
KroNI GCCGGC 1 cut(s) 467
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 3 cut(s) 382, 648, 751
Lsp1109I GCAGC 3 cut(s) 529, 616, 627
LweI GCATC 4 cut(s) 227, 529, 997, 1097
MaeI CTAG 1 cut(s) 1026
MaeII ACGT 6 cut(s) 131, 387, 392, 425, 678, 1171
MaeIII GTNAC 4 cut(s) 52, 388, 421, 1082
MboII GAAGA 4 cut(s) 35, 62, 1060, 1084
MflI RGATCY 7 cut(s) 309, 658, 694, 706, 727, 836, 952
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 2 cut(s) 173, 664
MluNI TGGCCA 1 cut(s) 867
MlyI GAGTC 6 cut(s) 227, 250, 269, 486, 494, 512
MmeI TCCRAC 2 cut(s) 600, 711
Mox20I TGGCCA 1 cut(s) 867
MroNI GCCGGC 1 cut(s) 465
MscI TGGCCA 1 cut(s) 867
MseI TTAA 1 cut(s) 875
Msp20I TGGCCA 1 cut(s) 867
MspI CCGG 5 cut(s) 194, 346, 466, 482, 992
MspR9I CCNGG 5 cut(s) 194, 346, 347, 482, 834
MvaI CCWGG 1 cut(s) 834
MvnI CGCG 4 cut(s) 210, 317, 337, 1093
NaeI GCCGGC 1 cut(s) 467
NciI CCSGG 4 cut(s) 194, 346, 347, 482
NcoI CCATGG 1 cut(s) 862
NgoMIV GCCGGC 1 cut(s) 465
NlaIII CATG 3 cut(s) 694, 866, 937
NlaIV GGNNCC 6 cut(s) 378, 489, 696, 729, 783, 838
NmeAIII GCCGAG 2 cut(s) 293, 649
NmuCI GTSAC 3 cut(s) 52, 388, 421
NruI TCGCGA 1 cut(s) 1093
NspI RCATGY 1 cut(s) 937
PauI GCGCGC 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 2 cut(s) 251, 684
PdiI GCCGGC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 1078, 1122
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 6 cut(s) 319, 464, 544, 631, 642, 1181
Ple19I CGATCG 1 cut(s) 972
PleI GAGTC 6 cut(s) 227, 250, 269, 485, 494, 512
PmaCI CACGTG 2 cut(s) 393, 426
PmlI CACGTG 2 cut(s) 393, 426
PpsI GAGTC 6 cut(s) 227, 250, 269, 485, 494, 512
Ppu21I YACGTR 3 cut(s) 393, 426, 679
PshAI GACNNNNGTC 1 cut(s) 605
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 832
PspCI CACGTG 2 cut(s) 393, 426
PspGI CCWGG 1 cut(s) 832
PspN4I GGNNCC 6 cut(s) 378, 489, 696, 729, 783, 838
PspPI GGNCC 3 cut(s) 88, 487, 781
PsuI RGATCY 7 cut(s) 309, 658, 694, 706, 727, 836, 952
PteI GCGCGC 1 cut(s) 208
PvuI CGATCG 1 cut(s) 972
RruI TCGCGA 1 cut(s) 1093
RsaI GTAC 3 cut(s) 677, 769, 1040
RsaNI GTAC 3 cut(s) 676, 768, 1039
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 875
SatI GCNGC 6 cut(s) 318, 463, 543, 630, 641, 1180
Sau96I GGNCC 3 cut(s) 88, 487, 781
SchI GAGTC 6 cut(s) 227, 250, 269, 486, 494, 512
ScrFI CCNGG 5 cut(s) 194, 346, 347, 482, 834
SfaNI GCATC 4 cut(s) 227, 529, 997, 1097
SinI GGWCC 1 cut(s) 781
SmaI CCCGGG 1 cut(s) 347
Sse9I AATT 2 cut(s) 173, 664
SspMI CTAG 1 cut(s) 1026
StyD4I CCNGG 5 cut(s) 192, 344, 345, 480, 832
StyI CCWWGG 2 cut(s) 74, 862
TaaI ACNGT 4 cut(s) 182, 761, 802, 872
TaiI ACGT 6 cut(s) 134, 390, 395, 428, 681, 1174
TaqI TCGA 5 cut(s) 221, 558, 968, 1068, 1161
TaqII GACCGA 2 cut(s) 447, 579
TasI AATT 2 cut(s) 173, 664
TauI GCSGC 3 cut(s) 320, 465, 1182
TfiI GAWTC 2 cut(s) 1078, 1122
Tru1I TTAA 1 cut(s) 875
Tru9I TTAA 1 cut(s) 875
TscAI CASTG 2 cut(s) 187, 875
TseFI GTSAC 3 cut(s) 52, 388, 421
TseI GCWGC 3 cut(s) 542, 629, 640
Tsp45I GTSAC 3 cut(s) 52, 388, 421
TspDTI ATGAA 2 cut(s) 141, 996
TspGWI ACGGA 6 cut(s) 594, 600, 606, 687, 789, 956
TspMI CCCGGG 1 cut(s) 345
TspRI CASTG 2 cut(s) 187, 875
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 781
XapI RAATTY 1 cut(s) 664
XceI RCATGY 1 cut(s) 937
XmaI CCCGGG 1 cut(s) 345
XspI CTAG 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.