Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

59338903 .. 59339981

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G034650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAACTGCGACACAAAGATCCACGCAGCCAACAAGCTGGCTTCGCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACTCCCGTGGCCCCGTTCTACGACTCACTCAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTCGACGACCGATACTTGTCCGACGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAGTACGTGTTCTCCGACATGGATCCTTATTTGGATCTGGATTACGGGGGAGTGGATCCGAAAGCTCAAACTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAACCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCATCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAGATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGAAGCCGAACGTCTCTGCCGCTACGGCGTCGTTCCCTCTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

312

Amino Acids

34.42

Weight (kDa)

5.28

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	4 - 42	2.7e-07	B-box zinc finger
CCT	PF06203	251 - 293	4.6e-18	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	512, 679
Acc36I	ACCTGC	1 cut(s)	855
AccII	CGCG	2 cut(s)	124, 826
AciI	CCGC	8 cut(s)	66, 168, 258, 728, 746, 839, 887, 913
AcoI	YGGCCR	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	397
AcvI	CACGTG	1 cut(s)	180
AcyI	GRCGYC	2 cut(s)	195, 921
AfaI	GTAC	3 cut(s)	410, 502, 773
AfiI	CCNNNNNNNGG	2 cut(s)	133, 138
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	1 cut(s)	554
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	565
AleI	CACNNNNGTG	1 cut(s)	215
AluBI	AGCT	5 cut(s)	13, 115, 470, 758, 833
AluI	AGCT	5 cut(s)	13, 115, 470, 758, 833
Alw26I	GTCTC	6 cut(s)	309, 315, 323, 836, 841, 911
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	186, 219, 598
ApeKI	GCWGC	4 cut(s)	104, 275, 362, 373
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	126, 879
AspS9I	GGNCC	2 cut(s)	220, 514
AsuC2I	CCSGG	2 cut(s)	133, 134
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	514
AxyI	CCTNAGG	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	600
BamHI	GGATCC	3 cut(s)	427, 460, 569
BauI	CACGAG	1 cut(s)	22
BbrPI	CACGTG	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	4 cut(s)	116, 262, 349, 360
BccI	CCATC	1 cut(s)	653
BceAI	ACGGC	4 cut(s)	54, 245, 263, 934
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	133, 134
BcoDI	GTCTC	6 cut(s)	309, 315, 323, 836, 841, 911
BfaI	CTAG	1 cut(s)	759
BfuAI	ACCTGC	1 cut(s)	855
BglI	GCCNNNNNGGC	1 cut(s)	918
BisI	GCNGC	5 cut(s)	105, 276, 363, 374, 913
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	5 cut(s)	106, 277, 364, 375, 914
Bme1390I	CCNGG	3 cut(s)	133, 134, 567
Bme18I	GGWCC	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	220, 514
BmiI	GGNNCC	6 cut(s)	165, 222, 429, 462, 516, 571
BmrFI	CCNGG	3 cut(s)	133, 134, 567
BmsI	GCATC	4 cut(s)	14, 262, 730, 830
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	812
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuMI	CCSGG	2 cut(s)	133, 134
BsaAI	YACGTR	2 cut(s)	180, 412
BsaHI	GRCGYC	2 cut(s)	195, 921
BsaI	GGTCTC	1 cut(s)	841
BsaJI	CCNNGG	4 cut(s)	132, 216, 357, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 138
Bse21I	CCTNAGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	4 cut(s)	132, 216, 357, 595
BseGI	GGATG	3 cut(s)	629, 646, 721
BseLI	CCNNNNNNNGG	2 cut(s)	133, 138
BseMII	CTCAG	2 cut(s)	327, 491
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	4 cut(s)	116, 262, 349, 360
Bsh1236I	CGCG	2 cut(s)	124, 826
Bsh1285I	CGRYCG	2 cut(s)	298, 705
BshFI	GGCC	3 cut(s)	188, 221, 600
BsiEI	CGRYCG	2 cut(s)	298, 705
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	133, 725
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	133, 138
BsmAI	GTCTC	6 cut(s)	309, 315, 323, 836, 841, 911
BsmBI	CGTCTC	5 cut(s)	309, 315, 323, 836, 911
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	3 cut(s)	188, 221, 600
Bso31I	GGTCTC	1 cut(s)	841
BsoBI	CYCGRG	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	873
Bsp19I	CCATGG	1 cut(s)	595
Bsp68I	TCGCGA	1 cut(s)	826
BspACI	CCGC	8 cut(s)	66, 168, 258, 728, 746, 839, 887, 913
BspANI	GGCC	3 cut(s)	188, 221, 600
BspCNI	CTCAG	2 cut(s)	328, 490
BspFNI	CGCG	2 cut(s)	124, 826
BspLI	GGNNCC	6 cut(s)	165, 222, 429, 462, 516, 571
BspMI	ACCTGC	1 cut(s)	855
BspTNI	GGTCTC	1 cut(s)	841
BssECI	CCNNGG	4 cut(s)	132, 216, 357, 595
BssNI	GRCGYC	2 cut(s)	195, 921
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	595
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	494, 535, 605
Bst6I	CTCTTC	1 cut(s)	776
BstACI	GRCGYC	2 cut(s)	195, 921
BstBAI	YACGTR	2 cut(s)	180, 412
BstC8I	GCNNGC	3 cut(s)	117, 158, 162
BstDEI	CTNAG	4 cut(s)	336, 387, 477, 873
BstDSI	CCRYGG	2 cut(s)	216, 595
BstF5I	GGATG	3 cut(s)	629, 646, 721
BstFNI	CGCG	2 cut(s)	124, 826
BstHHI	GCGC	2 cut(s)	126, 879
BstMAI	GTCTC	6 cut(s)	309, 315, 323, 836, 841, 911
BstMCI	CGRYCG	2 cut(s)	298, 705
BstMWI	GCNNNNNNNGC	9 cut(s)	24, 65, 84, 121, 153, 194, 362, 597, 918
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	1 cut(s)	670
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	131, 132, 565
BstUI	CGCG	2 cut(s)	124, 826
BstV1I	GCAGC	4 cut(s)	116, 262, 349, 360
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	7 cut(s)	96, 391, 427, 439, 460, 569, 685
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	7 cut(s)	96, 391, 427, 439, 460, 569, 685
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	188, 221, 600
BtgI	CCRYGG	2 cut(s)	216, 595
BtgZI	GCGATG	1 cut(s)	807
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	3 cut(s)	629, 646, 721
BtsIMutI	CAGTG	1 cut(s)	601
BtuMI	TCGCGA	1 cut(s)	826
BveI	ACCTGC	1 cut(s)	855
Cac8I	GCNNGC	3 cut(s)	117, 158, 162
CfoI	GCGC	2 cut(s)	126, 879
Cfr13I	GGNCC	2 cut(s)	220, 514
Cfr9I	CCCGGG	1 cut(s)	132
CseI	GACGC	4 cut(s)	196, 203, 637, 910
Csp6I	GTAC	3 cut(s)	409, 501, 772
CviAII	CATG	3 cut(s)	424, 596, 667
CviQI	GTAC	3 cut(s)	409, 501, 772
DdeI	CTNAG	4 cut(s)	336, 387, 477, 873
DrdI	GACNNNNNNGTC	2 cut(s)	512, 679
DseDI	GACNNNNNNGTC	2 cut(s)	512, 679
EaeI	YGGCCR	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
EciI	GGCGGA	1 cut(s)	761
Eco130I	CCWWGG	1 cut(s)	595
Eco31I	GGTCTC	1 cut(s)	841
Eco47I	GGWCC	1 cut(s)	514
Eco72I	CACGTG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
Esp3I	CGTCTC	5 cut(s)	309, 315, 323, 836, 911
FaeI	CATG	3 cut(s)	427, 599, 670
FaiI	YATR	6 cut(s)	425, 588, 597, 638, 668, 837
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	423, 595, 666
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	5 cut(s)	105, 276, 363, 374, 913
FokI	GGATG	3 cut(s)	616, 653, 708
Fsp4HI	GCNGC	5 cut(s)	105, 276, 363, 374, 913
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	2 cut(s)	125, 878
GluI	GCNGC	5 cut(s)	105, 276, 363, 374, 913
HaeIII	GGCC	3 cut(s)	188, 221, 600
HapII	CCGG	2 cut(s)	133, 725
HgaI	GACGC	4 cut(s)	196, 203, 637, 910
HhaI	GCGC	2 cut(s)	126, 879
Hin1I	GRCGYC	2 cut(s)	195, 921
Hin1II	CATG	3 cut(s)	427, 599, 670
Hin6I	GCGC	2 cut(s)	124, 877
HinP1I	GCGC	2 cut(s)	124, 877
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	7 cut(s)	20, 43, 62, 233, 251, 811, 855
HpaII	CCGG	2 cut(s)	133, 725
Hpy166II	GTNNAC	2 cut(s)	82, 283
Hpy188I	TCNGA	8 cut(s)	247, 271, 310, 396, 421, 465, 685, 735
Hpy188III	TCNNGA	5 cut(s)	443, 479, 752, 802, 825
Hpy8I	GTNNAC	2 cut(s)	82, 283
Hpy99I	CGWCG	7 cut(s)	40, 194, 197, 296, 314, 653, 926
HpyCH4III	ACNGT	3 cut(s)	494, 535, 605
HpyCH4IV	ACGT	4 cut(s)	174, 179, 411, 904
HpyCH4V	TGCA	3 cut(s)	27, 183, 523
HpyF10VI	GCNNNNNNNGC	9 cut(s)	24, 65, 84, 121, 153, 194, 362, 597, 918
HpyF3I	CTNAG	4 cut(s)	336, 387, 477, 873
HpySE526I	ACGT	4 cut(s)	174, 179, 411, 904
Hsp92I	GRCGYC	2 cut(s)	195, 921
Hsp92II	CATG	3 cut(s)	427, 599, 670
HspAI	GCGC	2 cut(s)	124, 877
LmnI	GCTCC	3 cut(s)	169, 381, 484
Lsp1109I	GCAGC	4 cut(s)	116, 262, 349, 360
LweI	GCATC	4 cut(s)	14, 262, 730, 830
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	4 cut(s)	174, 179, 411, 904
MaeIII	GTNAC	3 cut(s)	175, 208, 815
MboII	GAAGA	2 cut(s)	793, 817
MflI	RGATCY	7 cut(s)	96, 391, 427, 439, 460, 569, 685
MlsI	TGGCCA	1 cut(s)	600
MluCI	AATT	1 cut(s)	397
MluNI	TGGCCA	1 cut(s)	600
MlyI	GAGTC	5 cut(s)	14, 37, 56, 227, 245
MmeI	TCCRAC	2 cut(s)	333, 444
Mox20I	TGGCCA	1 cut(s)	600
MscI	TGGCCA	1 cut(s)	600
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	600
MspI	CCGG	2 cut(s)	133, 725
MspR9I	CCNGG	3 cut(s)	133, 134, 567
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	2 cut(s)	124, 826
MwoI	GCNNNNNNNGC	9 cut(s)	24, 65, 84, 121, 153, 194, 362, 597, 918
NciI	CCSGG	2 cut(s)	133, 134
NcoI	CCATGG	1 cut(s)	595
NlaIII	CATG	3 cut(s)	427, 599, 670
NlaIV	GGNNCC	6 cut(s)	165, 222, 429, 462, 516, 571
NmeAIII	GCCGAG	2 cut(s)	80, 382
NmuCI	GTSAC	2 cut(s)	175, 208
NruI	TCGCGA	1 cut(s)	826
NspI	RCATGY	1 cut(s)	670
OliI	CACNNNNGTG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 417
PfeI	GAWTC	2 cut(s)	811, 855
PkrI	GCNGC	5 cut(s)	106, 277, 364, 375, 914
Ple19I	CGATCG	1 cut(s)	705
PleI	GAGTC	5 cut(s)	14, 37, 56, 227, 245
PmaCI	CACGTG	1 cut(s)	180
PmlI	CACGTG	1 cut(s)	180
PpsI	GAGTC	5 cut(s)	14, 37, 56, 227, 245
Ppu21I	YACGTR	2 cut(s)	180, 412
PshAI	GACNNNNGTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	565
PspCI	CACGTG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	6 cut(s)	165, 222, 429, 462, 516, 571
PspPI	GGNCC	2 cut(s)	220, 514
PsuI	RGATCY	7 cut(s)	96, 391, 427, 439, 460, 569, 685
PvuI	CGATCG	1 cut(s)	705
RruI	TCGCGA	1 cut(s)	826
RsaI	GTAC	3 cut(s)	410, 502, 773
RsaNI	GTAC	3 cut(s)	409, 501, 772
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	5 cut(s)	105, 276, 363, 374, 913
Sau96I	GGNCC	2 cut(s)	220, 514
SchI	GAGTC	5 cut(s)	14, 37, 56, 227, 245
ScrFI	CCNGG	3 cut(s)	133, 134, 567
SfaNI	GCATC	4 cut(s)	14, 262, 730, 830
SinI	GGWCC	1 cut(s)	514
SmaI	CCCGGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	8 cut(s)	66, 168, 258, 728, 746, 839, 887, 913
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	3 cut(s)	131, 132, 565
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	494, 535, 605
TaiI	ACGT	4 cut(s)	177, 182, 414, 907
TaqI	TCGA	5 cut(s)	8, 291, 701, 801, 894
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	397
TauI	GCSGC	1 cut(s)	915
TfiI	GAWTC	2 cut(s)	811, 855
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	1 cut(s)	608
TseFI	GTSAC	2 cut(s)	175, 208
TseI	GCWGC	4 cut(s)	104, 275, 362, 373
Tsp45I	GTSAC	2 cut(s)	175, 208
TspDTI	ATGAA	2 cut(s)	571, 729
TspGWI	ACGGA	5 cut(s)	327, 333, 339, 522, 689
TspMI	CCCGGG	1 cut(s)	132
TspRI	CASTG	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	670
XmaI	CCCGGG	1 cut(s)	132
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.