Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

34888269 .. 34896260

Gene Structure 7992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGGAGAGTTGCTTCAGCGAACGAGAAATCTACTCTGTTAACGCCCCCCCCCCCCCCTCAGCCGCCAACACGAGAGTTCTGGTGGCTCCGTTCTATGACTTGTTGAACTCGAATGACTTAACCGCAGTCAAATCTGATGATGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGAAGCAGACGGAGACGGAGAGACGACTGAGGTTAGCAAAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTATGGATATGAACTTGGGGCAGTACATGTTCTCCGACATGGATCCGCATTTGGATTTGGATTACGGGGCAGTGGATCTGAAAGCTCCAGCTCAGGAGGAGCAGAACAGTAGCGGTACTAATGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTACCAACTTCCAAGCCTTTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

151

Amino Acids

16.59

Weight (kDa)

4.05

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	66, 126, 146, 166, 299, 366
AclWI	GGATC	3 cut(s)	290, 303, 336
AfaI	GTAC	2 cut(s)	278, 370
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	109, 422
AluBI	AGCT	3 cut(s)	338, 344, 417
AluI	AGCT	3 cut(s)	338, 344, 417
Alw26I	GTCTC	2 cut(s)	183, 191
AlwI	GGATC	3 cut(s)	290, 303, 336
ApeKI	GCWGC	2 cut(s)	230, 241
AspS9I	GGNCC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	217, 228
BcoDI	GTCTC	2 cut(s)	183, 191
BisI	GCNGC	3 cut(s)	66, 231, 242
BlsI	GCNGC	3 cut(s)	67, 232, 243
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	3 cut(s)	90, 297, 384
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	2 cut(s)	61, 345
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
BseDI	CCNNGG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	75, 195, 359
BseRI	GAGGAG	2 cut(s)	20, 365
BseXI	GCAGC	2 cut(s)	217, 228
BslFI	GGGAC	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	183, 191
BsmBI	CGTCTC	2 cut(s)	183, 191
BsmFI	GGGAC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	295, 328
BspACI	CCGC	6 cut(s)	66, 126, 146, 166, 299, 366
BspCNI	CTCAG	3 cut(s)	74, 196, 358
BspLI	GGNNCC	3 cut(s)	90, 297, 384
BspPI	GGATC	3 cut(s)	290, 303, 336
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	295, 328
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	362, 403
BstDEI	CTNAG	3 cut(s)	61, 204, 345
BstKTI	GATC	2 cut(s)	298, 331
BstMAI	GTCTC	2 cut(s)	183, 191
BstMBI	GATC	2 cut(s)	295, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	217, 228
BstX2I	RGATCY	2 cut(s)	295, 328
BstYI	RGATCY	2 cut(s)	295, 328
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	277, 369
CviAII	CATG	2 cut(s)	280, 292
CviQI	GTAC	2 cut(s)	277, 369
DdeI	CTNAG	3 cut(s)	61, 204, 345
DpnI	GATC	2 cut(s)	297, 330
DpnII	GATC	2 cut(s)	295, 328
Eco47I	GGWCC	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	183, 191
FaeI	CATG	2 cut(s)	283, 295
FaiI	YATR	5 cut(s)	99, 257, 263, 281, 293
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	279, 291
Fnu4HI	GCNGC	3 cut(s)	66, 231, 242
Fsp4HI	GCNGC	3 cut(s)	66, 231, 242
GluI	GCNGC	3 cut(s)	66, 231, 242
GsuI	CTGGAG	1 cut(s)	324
Hin1II	CATG	2 cut(s)	283, 295
HincII	GTYRAC	2 cut(s)	43, 151
HindII	GTYRAC	2 cut(s)	43, 151
HindIII	AAGCTT	1 cut(s)	415
HpaI	GTTAAC	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	43, 151
Hpy188I	TCNGA	4 cut(s)	139, 178, 289, 333
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	2 cut(s)	43, 151
HpyCH4III	ACNGT	2 cut(s)	362, 403
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	3 cut(s)	61, 204, 345
Hsp92II	CATG	2 cut(s)	283, 295
KspAI	GTTAAC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	295, 328
LmnI	GCTCC	4 cut(s)	94, 249, 343, 352
LpnPI	CCDG	5 cut(s)	68, 332, 354, 399, 419
Lsp1109I	GCAGC	2 cut(s)	217, 228
LweI	GCATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	2 cut(s)	297, 330
MboI	GATC	2 cut(s)	295, 328
MflI	RGATCY	2 cut(s)	295, 328
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	70, 167, 199, 211, 220, 343, 420
MseI	TTAA	2 cut(s)	42, 122
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	2 cut(s)	295, 328
NlaIII	CATG	2 cut(s)	283, 295
NlaIV	GGNNCC	3 cut(s)	90, 297, 384
NmeAIII	GCCGAG	1 cut(s)	250
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	67, 232, 243
PscI	ACATGT	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	90, 297, 384
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	295, 328
RsaI	GTAC	2 cut(s)	278, 370
RsaNI	GTAC	2 cut(s)	277, 369
SaqAI	TTAA	2 cut(s)	42, 122
SatI	GCNGC	3 cut(s)	66, 231, 242
Sau3AI	GATC	2 cut(s)	295, 328
Sau96I	GGNCC	1 cut(s)	382
SetI	ASST	4 cut(s)	210, 340, 346, 419
SfaNI	GCATC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	382
SsiI	CCGC	6 cut(s)	66, 126, 146, 166, 299, 366
TaaI	ACNGT	2 cut(s)	362, 403
TaqI	TCGA	2 cut(s)	113, 159
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	42, 122
Tru9I	TTAA	2 cut(s)	42, 122
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	2 cut(s)	230, 241
TspDTI	ATGAA	2 cut(s)	278, 439
TspGWI	ACGGA	3 cut(s)	81, 201, 207
TspRI	CASTG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	382
XceI	RCATGY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.