Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

34786928 .. 34797701

Gene Structure 10774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAACGCTCTGCGTCACCAGCGAACGAGAAATCCACTCTGTTAACCCCCCCCCCCCCCTCAGCCACCAACACGAGAGTTCTGGTGGCTCCGTTCTATGACTTGTTGAACTCGAATGACTCAACCGCAGTCAAATCTGATGATGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGAAGCAGAGGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAGATCCTATGGATCTGAACTTGGGGCAGTACATGTTCTCCGACATGGATCCGTATTTGGATTTGGATTACGGGGCAGTGGATCTGAAAGCTCCAGCTCAGGAGGAGCAGAACAATAGCGGAACTAATGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTACCAACTTCCAAGCCTTTCATCTACGGCTACCATGGCTACTGTTTAAGCCAGAGTGTATCATCATTCTCTATGGATGTTAGCGTCGTGCTAGATGGCAACATACTGACAGAGTTGTTAGATCCCTTCCCCAAGTCGATCAGCGATCAGTTAACGCATCCGACGGTTCAGATTTCATCGACAGAACGGGAAGCTATGGTGTTGAGAACCCAAATCCTTCCCTCCGATGAACCATGTCAAGAATTTGACAACCCATGTCAAGAATTTTATATTAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCAGAGACCCAAAATAATATCCTTCGTGGTCGCCGCCGCTCTCCAGCTCCGACGCCGTCGCTCTCCACCACCTCCTACGCCCTCTTTGGAAAGTTACAAACACGTGGACATCATGGAAAATACATCAGAGGAATGGAAGTTTTTCCCAACAGAAACACAGATGACATATATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

315

Amino Acids

35.11

Weight (kDa)

4.47

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	810
AccIII	TCCGGA	1 cut(s)	757
AciI	CCGC	7 cut(s)	126, 146, 166, 366, 770, 805, 808
AclWI	GGATC	6 cut(s)	245, 267, 290, 303, 336, 545
AcsI	RAATTY	2 cut(s)	671, 692
AcvI	CACGTG	1 cut(s)	875
AcyI	GRCGYC	1 cut(s)	824
AfaI	GTAC	1 cut(s)	278
AflIII	ACRYGT	3 cut(s)	279, 706, 872
AgsI	TTSAA	2 cut(s)	109, 422
AjiI	CACGTC	1 cut(s)	709
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	5 cut(s)	338, 344, 417, 623, 818
AluI	AGCT	5 cut(s)	338, 344, 417, 623, 818
Alw26I	GTCTC	3 cut(s)	183, 191, 770
AlwI	GGATC	6 cut(s)	245, 267, 290, 303, 336, 545
Aor13HI	TCCGGA	1 cut(s)	757
ApeKI	GCWGC	2 cut(s)	230, 241
ApoI	RAATTY	2 cut(s)	671, 692
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	382
BamHI	GGATCC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	73
BbrPI	CACGTG	1 cut(s)	875
BbsI	GAAGAC	1 cut(s)	703
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	2 cut(s)	217, 228
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	2 cut(s)	472, 811
BcoDI	GTCTC	3 cut(s)	183, 191, 770
BfaI	CTAG	1 cut(s)	521
BisI	GCNGC	4 cut(s)	231, 242, 805, 808
BlsI	GCNGC	4 cut(s)	232, 243, 806, 809
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	3 cut(s)	90, 297, 384
BmrI	ACTGGG	1 cut(s)	740
BmsI	GCATC	2 cut(s)	133, 595
BmuI	ACTGGG	1 cut(s)	740
BoxI	GACNNNNGTC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	703
BpmI	CTGGAG	2 cut(s)	324, 798
Bpu10I	CCTNAGC	2 cut(s)	61, 345
BsaAI	YACGTR	1 cut(s)	875
BsaHI	GRCGYC	1 cut(s)	824
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	2 cut(s)	225, 463
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse1I	ACTGG	1 cut(s)	746
BseAI	TCCGGA	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	225, 463
BseGI	GGATG	2 cut(s)	511, 586
BseMII	CTCAG	3 cut(s)	75, 195, 359
BseNI	ACTGG	1 cut(s)	746
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	217, 228
BsiSI	CCGG	1 cut(s)	758
BslFI	GGGAC	1 cut(s)	368
BsmAI	GTCTC	3 cut(s)	183, 191, 770
BsmBI	CGTCTC	2 cut(s)	183, 191
BsmFI	GGGAC	1 cut(s)	368
Bso31I	GGTCTC	1 cut(s)	770
Bsp13I	TCCGGA	1 cut(s)	757
Bsp143I	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	7 cut(s)	126, 146, 166, 366, 770, 805, 808
BspCNI	CTCAG	3 cut(s)	74, 196, 358
BspEI	TCCGGA	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	90, 297, 384
BspPI	GGATC	6 cut(s)	245, 267, 290, 303, 336, 545
BspTNI	GGTCTC	1 cut(s)	770
BsrBI	CCGCTC	1 cut(s)	810
BsrI	ACTGG	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	225, 463
BssMI	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
BssNI	GRCGYC	1 cut(s)	824
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	3 cut(s)	403, 473, 595
Bst6I	CTCTTC	1 cut(s)	721
BstACI	GRCGYC	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	875
BstDEI	CTNAG	3 cut(s)	61, 204, 345
BstDSI	CCRYGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	511, 586
BstKTI	GATC	7 cut(s)	253, 262, 298, 331, 553, 570, 577
BstMAI	GTCTC	3 cut(s)	183, 191, 770
BstMBI	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 230, 465
BstNSI	RCATGY	1 cut(s)	283
BstPAI	GACNNNNGTC	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	217, 228
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	5 cut(s)	250, 259, 295, 328, 550
BstYI	RGATCY	5 cut(s)	250, 259, 295, 328, 550
BtgI	CCRYGG	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	709
BtsCI	GGATG	2 cut(s)	511, 586
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	3 cut(s)	3, 502, 832
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	6 cut(s)	280, 292, 464, 663, 684, 884
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	61, 204, 345
DpnI	GATC	7 cut(s)	252, 261, 297, 330, 552, 569, 576
DpnII	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	463
Eco31I	GGTCTC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	382
Eco72I	CACGTG	1 cut(s)	875
EcoT14I	CCWWGG	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	463
Esp3I	CGTCTC	2 cut(s)	183, 191
FaeI	CATG	6 cut(s)	283, 295, 467, 666, 687, 887
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	6 cut(s)	279, 291, 463, 662, 683, 883
FauI	CCCGC	1 cut(s)	777
Fnu4HI	GCNGC	4 cut(s)	231, 242, 805, 808
FokI	GGATG	2 cut(s)	518, 573
Fsp4HI	GCNGC	4 cut(s)	231, 242, 805, 808
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	4 cut(s)	231, 242, 805, 808
GsuI	CTGGAG	2 cut(s)	324, 798
HapII	CCGG	1 cut(s)	758
HgaI	GACGC	3 cut(s)	3, 502, 832
Hin1I	GRCGYC	1 cut(s)	824
Hin1II	CATG	6 cut(s)	283, 295, 467, 666, 687, 887
HincII	GTYRAC	3 cut(s)	45, 151, 582
HindII	GTYRAC	3 cut(s)	45, 151, 582
HindIII	AAGCTT	1 cut(s)	415
HinfI	GANTC	2 cut(s)	119, 761
HpaI	GTTAAC	2 cut(s)	45, 582
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	4 cut(s)	45, 151, 582, 878
Hpy188III	TCNNGA	4 cut(s)	347, 668, 689, 758
Hpy8I	GTNNAC	4 cut(s)	45, 151, 582, 878
Hpy99I	CGWCG	4 cut(s)	518, 595, 826, 832
HpyAV	CCTTC	3 cut(s)	565, 656, 803
HpyCH4III	ACNGT	3 cut(s)	403, 473, 595
HpyCH4IV	ACGT	2 cut(s)	708, 874
HpyCH4V	TGCA	3 cut(s)	4, 391, 739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 230, 465
HpyF3I	CTNAG	3 cut(s)	61, 204, 345
HpySE526I	ACGT	2 cut(s)	708, 874
Hsp92I	GRCGYC	1 cut(s)	824
Hsp92II	CATG	6 cut(s)	283, 295, 467, 666, 687, 887
Kpn2I	TCCGGA	1 cut(s)	757
KspAI	GTTAAC	2 cut(s)	45, 582
Kzo9I	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
LmnI	GCTCC	5 cut(s)	94, 249, 343, 352, 823
Lsp1109I	GCAGC	2 cut(s)	217, 228
LweI	GCATC	2 cut(s)	133, 595
MaeI	CTAG	1 cut(s)	521
MaeII	ACGT	2 cut(s)	708, 874
MaeIII	GTNAC	3 cut(s)	15, 429, 864
MalI	GATC	7 cut(s)	252, 261, 297, 330, 552, 569, 576
MbiI	CCGCTC	1 cut(s)	810
MboI	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
MboII	GAAGA	3 cut(s)	703, 708, 743
MflI	RGATCY	5 cut(s)	250, 259, 295, 328, 550
MluCI	AATT	3 cut(s)	671, 692, 734
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	3 cut(s)	312, 614, 845
MroI	TCCGGA	1 cut(s)	757
MroXI	GAANNNNTTC	1 cut(s)	912
MseI	TTAA	4 cut(s)	44, 476, 581, 702
MspI	CCGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	20, 230, 465
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
NlaIII	CATG	6 cut(s)	283, 295, 467, 666, 687, 887
NlaIV	GGNNCC	3 cut(s)	90, 297, 384
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	1 cut(s)	761
PflFI	GACNNNGTC	1 cut(s)	826
PkrI	GCNGC	4 cut(s)	232, 243, 806, 809
PleI	GAGTC	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	875
PmlI	CACGTG	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	875
PscI	ACATGT	1 cut(s)	279
PshAI	GACNNNNGTC	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	875
PspN4I	GGNNCC	3 cut(s)	90, 297, 384
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	5 cut(s)	250, 259, 295, 328, 550
PsyI	GACNNNGTC	1 cut(s)	826
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	4 cut(s)	44, 476, 581, 702
SatI	GCNGC	4 cut(s)	231, 242, 805, 808
Sau3AI	GATC	7 cut(s)	250, 259, 295, 328, 550, 567, 574
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	113
SetI	ASST	9 cut(s)	210, 340, 346, 419, 625, 711, 820, 845, 877
SfaNI	GCATC	2 cut(s)	133, 595
SinI	GGWCC	1 cut(s)	382
Sse9I	AATT	3 cut(s)	671, 692, 734
SsiI	CCGC	7 cut(s)	126, 146, 166, 366, 770, 805, 808
SspMI	CTAG	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	3 cut(s)	403, 473, 595
TaiI	ACGT	2 cut(s)	711, 877
TaqI	TCGA	4 cut(s)	113, 159, 566, 608
TasI	AATT	3 cut(s)	671, 692, 734
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	2 cut(s)	807, 810
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	4 cut(s)	44, 476, 581, 702
Tru9I	TTAA	4 cut(s)	44, 476, 581, 702
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	2 cut(s)	230, 241
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	439, 594, 672
TspGWI	ACGGA	3 cut(s)	81, 207, 288
TspRI	CASTG	1 cut(s)	330
Tth111I	GACNNNGTC	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	671, 692
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.