Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

54466959 .. 54467297

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCAACGCTCTGCGTCACCTGCGACTGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGACACGACAGTTCTGGTGGCTCCTTTCTACGACTCGCTAAACTCGGACTACTCAACCACCGTCAAATCTGGGGCTGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGACACAGATGGAGACGGGGAGACGACTGAGGTCAGCAGAGAGGAAGTTGAGGCTGCTTCGTGGCTGCTCCCAGATCCTACAGATCTGAACTTGGGGCAGTACATGTTCTCCGACATGGATCCGTATTTGGATTTGGATTACAGGGCAGTGGATCCGAAAGCTCCAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

4.05

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	3 cut(s)	57, 137, 157
AclWI	GGATC	5 cut(s)	236, 281, 294, 314, 327
AfaI	GTAC	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	270
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw26I	GTCTC	2 cut(s)	174, 182
AlwI	GGATC	5 cut(s)	236, 281, 294, 314, 327
ApeKI	GCWGC	3 cut(s)	134, 221, 232
AsuHPI	GGTGA	1 cut(s)	9
BamHI	GGATCC	2 cut(s)	286, 319
BbvCI	CCTCAGC	1 cut(s)	52
BbvI	GCAGC	3 cut(s)	121, 208, 219
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	174, 182
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	4 cut(s)	57, 135, 222, 233
BlsI	GCNGC	4 cut(s)	58, 136, 223, 234
BmiI	GGNNCC	3 cut(s)	81, 288, 321
BoxI	GACNNNNGTC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
BseMII	CTCAG	3 cut(s)	18, 66, 186
BseXI	GCAGC	3 cut(s)	121, 208, 219
BsmAI	GTCTC	2 cut(s)	174, 182
BsmBI	CGTCTC	2 cut(s)	174, 182
Bsp143I	GATC	4 cut(s)	241, 250, 286, 319
BspACI	CCGC	3 cut(s)	57, 137, 157
BspCNI	CTCAG	3 cut(s)	19, 65, 187
BspLI	GGNNCC	3 cut(s)	81, 288, 321
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	5 cut(s)	236, 281, 294, 314, 327
BssMI	GATC	4 cut(s)	241, 250, 286, 319
Bst4CI	ACNGT	2 cut(s)	70, 121
BstDEI	CTNAG	3 cut(s)	27, 52, 195
BstKTI	GATC	4 cut(s)	244, 253, 289, 322
BstMAI	GTCTC	2 cut(s)	174, 182
BstMBI	GATC	4 cut(s)	241, 250, 286, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	274
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	121, 208, 219
BstX2I	RGATCY	4 cut(s)	241, 250, 286, 319
BstYI	RGATCY	4 cut(s)	241, 250, 286, 319
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	271, 283
CviJI	RGCY	6 cut(s)	56, 80, 134, 221, 232, 329
CviKI_1	RGCY	6 cut(s)	56, 80, 134, 221, 232, 329
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	27, 52, 195
DpnI	GATC	4 cut(s)	243, 252, 288, 321
DpnII	GATC	4 cut(s)	241, 250, 286, 319
Esp3I	CGTCTC	2 cut(s)	174, 182
FaeI	CATG	2 cut(s)	274, 286
FaiI	YATR	2 cut(s)	272, 284
FatI	CATG	2 cut(s)	270, 282
Fnu4HI	GCNGC	4 cut(s)	57, 135, 222, 233
Fsp4HI	GCNGC	4 cut(s)	57, 135, 222, 233
GluI	GCNGC	4 cut(s)	57, 135, 222, 233
GsuI	CTGGAG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	2 cut(s)	274, 286
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	5 cut(s)	106, 169, 255, 280, 324
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	70, 121
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	3 cut(s)	27, 52, 195
Hsp92II	CATG	2 cut(s)	274, 286
Kzo9I	GATC	4 cut(s)	241, 250, 286, 319
LmnI	GCTCC	3 cut(s)	85, 240, 334
LpnPI	CCDG	5 cut(s)	33, 59, 114, 252, 295
Lsp1109I	GCAGC	3 cut(s)	121, 208, 219
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	4 cut(s)	243, 252, 288, 321
MboI	GATC	4 cut(s)	241, 250, 286, 319
MflI	RGATCY	4 cut(s)	241, 250, 286, 319
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	192, 303
MnlI	CCTC	5 cut(s)	61, 158, 190, 202, 211
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	4 cut(s)	241, 250, 286, 319
NlaIII	CATG	2 cut(s)	274, 286
NlaIV	GGNNCC	3 cut(s)	81, 288, 321
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	28
PciI	ACATGT	1 cut(s)	270
PkrI	GCNGC	4 cut(s)	58, 136, 223, 234
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	270
PshAI	GACNNNNGTC	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	81, 288, 321
PsuI	RGATCY	4 cut(s)	241, 250, 286, 319
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SatI	GCNGC	4 cut(s)	57, 135, 222, 233
Sau3AI	GATC	4 cut(s)	241, 250, 286, 319
SchI	GAGTC	1 cut(s)	86
SetI	ASST	3 cut(s)	22, 201, 331
SfcI	CTRYAG	1 cut(s)	246
SsiI	CCGC	3 cut(s)	57, 137, 157
TaaI	ACNGT	2 cut(s)	70, 121
TaqI	TCGA	1 cut(s)	150
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	59
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	134, 221, 232
Tsp45I	GTSAC	1 cut(s)	15
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	1 cut(s)	321
XceI	RCATGY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.