Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

32150715 .. 32151283

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCAATGCTCTACGTCACCTGCGACCAAGAAATCCACTCTGCTAACCCCCCTCAGCCGCCGACACGAGAGTTCTGGTGGCTCCTTTCTAGACTCGCTGAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGACGCAGACGGAGACAGAGAGACGACTGAGGTCAGCAAAGAGGAAGCTGAGGCTGCTTCATGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACATGTTCTCCGACATGGATCCGTATTTGGATCTGGATTACGGGGCAGTGGATCTGAAAGCTCCAGCTCAGGAGGAGCAGAACAGTAGCGGTACTGACGAAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAACTGCCAAGCCTTTCATCTATGGCTACCATGGCCAGTGTATCATCATCCTCTATGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

162

Amino Acids

17.73

Weight (kDa)

4.15

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
AasI	GACNNNNNNGTC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	28
AciI	CCGC	5 cut(s)	58, 117, 137, 157, 357
AclWI	GGATC	6 cut(s)	236, 258, 281, 294, 306, 327
AcoI	YGGCCR	1 cut(s)	457
AfaI	GTAC	2 cut(s)	269, 361
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	1 cut(s)	413
AluBI	AGCT	4 cut(s)	215, 329, 335, 408
AluI	AGCT	4 cut(s)	215, 329, 335, 408
Alw26I	GTCTC	2 cut(s)	174, 182
AlwI	GGATC	6 cut(s)	236, 258, 281, 294, 306, 327
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	134, 221, 232
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	373
BalI	TGGCCA	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	65
BbvCI	CCTCAGC	2 cut(s)	53, 216
BbvI	GCAGC	3 cut(s)	121, 208, 219
BceAI	ACGGC	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	174, 182
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	58, 135, 222, 233
BlsI	GCNGC	4 cut(s)	59, 136, 223, 234
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	82, 288, 375
BmsI	GCATC	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	315
Bpu10I	CCTNAGC	3 cut(s)	53, 216, 336
BsaJI	CCNNGG	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	2 cut(s)	471, 488
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	4 cut(s)	67, 186, 207, 350
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	121, 208, 219
BshFI	GGCC	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	359
BsmAI	GTCTC	2 cut(s)	174, 182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	459
Bsp143I	GATC	5 cut(s)	241, 250, 286, 298, 319
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	5 cut(s)	58, 117, 137, 157, 357
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	4 cut(s)	66, 187, 208, 349
BspLI	GGNNCC	3 cut(s)	82, 288, 375
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	6 cut(s)	236, 258, 281, 294, 306, 327
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	5 cut(s)	241, 250, 286, 298, 319
BssSI	CACGAG	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	353, 394
BstDEI	CTNAG	4 cut(s)	53, 195, 216, 336
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	2 cut(s)	471, 488
BstKTI	GATC	5 cut(s)	244, 253, 289, 301, 322
BstMAI	GTCTC	2 cut(s)	174, 182
BstMBI	GATC	5 cut(s)	241, 250, 286, 298, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 456
BstNSI	RCATGY	1 cut(s)	274
BstPAI	GACNNNNGTC	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	121, 208, 219
BstX2I	RGATCY	5 cut(s)	241, 250, 286, 298, 319
BstYI	RGATCY	5 cut(s)	241, 250, 286, 298, 319
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	2 cut(s)	471, 488
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 467
BveI	ACCTGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	268, 360
CviAII	CATG	4 cut(s)	228, 271, 283, 455
CviQI	GTAC	2 cut(s)	268, 360
DdeI	CTNAG	4 cut(s)	53, 195, 216, 336
DpnI	GATC	5 cut(s)	243, 252, 288, 300, 321
DpnII	GATC	5 cut(s)	241, 250, 286, 298, 319
DrdI	GACNNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	371
EaeI	YGGCCR	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	4 cut(s)	231, 274, 286, 458
FaiI	YATR	6 cut(s)	229, 272, 284, 447, 456, 480
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	4 cut(s)	227, 270, 282, 454
Fnu4HI	GCNGC	4 cut(s)	58, 135, 222, 233
FokI	GGATG	1 cut(s)	458
Fsp4HI	GCNGC	4 cut(s)	58, 135, 222, 233
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	4 cut(s)	58, 135, 222, 233
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	231, 274, 286, 458
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	406
HinfI	GANTC	2 cut(s)	92, 110
HphI	GGTGA	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	6 cut(s)	106, 130, 169, 255, 280, 324
Hpy188III	TCNNGA	3 cut(s)	89, 302, 338
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	353, 394
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	2 cut(s)	4, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 456
HpyF3I	CTNAG	4 cut(s)	53, 195, 216, 336
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	4 cut(s)	231, 274, 286, 458
Kzo9I	GATC	5 cut(s)	241, 250, 286, 298, 319
LmnI	GCTCC	4 cut(s)	86, 240, 334, 343
LpnPI	CCDG	9 cut(s)	33, 60, 252, 287, 323, 345, 390, 410, 473
Lsp1109I	GCAGC	3 cut(s)	121, 208, 219
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	5 cut(s)	243, 252, 288, 300, 321
MboI	GATC	5 cut(s)	241, 250, 286, 298, 319
MflI	RGATCY	5 cut(s)	241, 250, 286, 298, 319
MlsI	TGGCCA	1 cut(s)	459
MluNI	TGGCCA	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	86, 104
MmeI	TCCRAC	2 cut(s)	192, 303
MnlI	CCTC	8 cut(s)	62, 158, 190, 202, 211, 334, 411, 485
Mox20I	TGGCCA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	221, 456
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	5 cut(s)	241, 250, 286, 298, 319
NlaIII	CATG	4 cut(s)	231, 274, 286, 458
NlaIV	GGNNCC	3 cut(s)	82, 288, 375
NmuCI	GTSAC	1 cut(s)	15
NspI	RCATGY	1 cut(s)	274
PaqCI	CACCTGC	1 cut(s)	28
PciI	ACATGT	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PkrI	GCNGC	4 cut(s)	59, 136, 223, 234
PleI	GAGTC	2 cut(s)	86, 104
PpsI	GAGTC	2 cut(s)	86, 104
PscI	ACATGT	1 cut(s)	270
PshAI	GACNNNNGTC	1 cut(s)	197
PspN4I	GGNNCC	3 cut(s)	82, 288, 375
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	5 cut(s)	241, 250, 286, 298, 319
RsaI	GTAC	2 cut(s)	269, 361
RsaNI	GTAC	2 cut(s)	268, 360
SatI	GCNGC	4 cut(s)	58, 135, 222, 233
Sau3AI	GATC	5 cut(s)	241, 250, 286, 298, 319
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	2 cut(s)	86, 104
SetI	ASST	7 cut(s)	17, 22, 201, 217, 331, 337, 410
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	373
SsiI	CCGC	5 cut(s)	58, 117, 137, 157, 357
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	353, 394
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	150
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	1 cut(s)	60
TscAI	CASTG	2 cut(s)	321, 467
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	134, 221, 232
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	2 cut(s)	216, 430
TspGWI	ACGGA	3 cut(s)	192, 263, 279
TspRI	CASTG	2 cut(s)	321, 467
VpaK11BI	GGWCC	1 cut(s)	373
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.