Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

40165688 .. 40166002

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45589

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGACTGAGGTCAGCAGAGAGGAAGCTAAGGCTGCTTCGTGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAATACATGTTCTCGGACATGGATCCTTATTTGGATCTGGATTACGAGGCAGTGGATCCGAAAGCTCCAGATCCGGAGGAGCAGAACAGTAGTGGTACTAACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAACTTCCAAGCCTTTCATCTACGGCTACCATGGCCACTATTTAAGCCAGAGTATAAGACACCTTCCTCGATCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

104

Amino Acids

11.73

Weight (kDa)

4.48

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	148
AclWI	GGATC	8 cut(s)	47, 69, 92, 105, 117, 125, 138, 140
AcoI	YGGCCR	1 cut(s)	268
AfaI	GTAC	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	26, 140, 219
AluI	AGCT	3 cut(s)	26, 140, 219
AlwI	GGATC	8 cut(s)	47, 69, 92, 105, 117, 125, 138, 140
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	32, 43
AspS9I	GGNCC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	270
BamHI	GGATCC	2 cut(s)	97, 130
BbvI	GCAGC	2 cut(s)	19, 30
BceAI	ACGGC	1 cut(s)	274
BisI	GCNGC	2 cut(s)	33, 44
BlsI	GCNGC	2 cut(s)	34, 45
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	99, 132, 186
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	19, 30
BshFI	GGCC	1 cut(s)	270
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
Bsp19I	CCATGG	1 cut(s)	265
BspANI	GGCC	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	99, 132, 186
BspPI	GGATC	8 cut(s)	47, 69, 92, 105, 117, 125, 138, 140
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
BssT1I	CCWWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	164, 205
BstDEI	CTNAG	2 cut(s)	6, 27
BstDSI	CCRYGG	1 cut(s)	265
BstKTI	GATC	7 cut(s)	55, 64, 100, 112, 133, 148, 308
BstMBI	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 267
BstNSI	RCATGY	1 cut(s)	85
BstPAI	GACNNNNGTC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	19, 30
BstX2I	RGATCY	6 cut(s)	52, 61, 97, 109, 130, 145
BstYI	RGATCY	6 cut(s)	52, 61, 97, 109, 130, 145
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	3 cut(s)	82, 94, 266
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	2 cut(s)	6, 27
DpnI	GATC	7 cut(s)	54, 63, 99, 111, 132, 147, 307
DpnII	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
EaeI	YGGCCR	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	85, 97, 269
FaiI	YATR	4 cut(s)	83, 95, 267, 290
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	81, 93, 265
Fnu4HI	GCNGC	2 cut(s)	33, 44
Fsp4HI	GCNGC	2 cut(s)	33, 44
GluI	GCNGC	2 cut(s)	33, 44
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	3 cut(s)	85, 97, 269
HindIII	AAGCTT	1 cut(s)	217
HpaII	CCGG	1 cut(s)	149
Hpy188I	TCNGA	3 cut(s)	66, 91, 135
Hpy188III	TCNNGA	3 cut(s)	113, 143, 149
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	2 cut(s)	164, 205
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 267
HpyF3I	CTNAG	2 cut(s)	6, 27
Hsp92II	CATG	3 cut(s)	85, 97, 269
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
LmnI	GCTCC	3 cut(s)	51, 145, 154
LpnPI	CCDG	7 cut(s)	63, 98, 156, 162, 201, 221, 296
Lsp1109I	GCAGC	2 cut(s)	19, 30
MalI	GATC	7 cut(s)	54, 63, 99, 111, 132, 147, 307
MboI	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
MflI	RGATCY	6 cut(s)	52, 61, 97, 109, 130, 145
MlsI	TGGCCA	1 cut(s)	270
MluNI	TGGCCA	1 cut(s)	270
MnlI	CCTC	5 cut(s)	13, 115, 145, 222, 312
Mox20I	TGGCCA	1 cut(s)	270
MroI	TCCGGA	1 cut(s)	148
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	270
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	32, 267
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
NlaIII	CATG	3 cut(s)	85, 97, 269
NlaIV	GGNNCC	3 cut(s)	99, 132, 186
NspI	RCATGY	1 cut(s)	85
PciI	ACATGT	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	34, 45
PscI	ACATGT	1 cut(s)	81
PshAI	GACNNNNGTC	1 cut(s)	8
PspN4I	GGNNCC	3 cut(s)	99, 132, 186
PspPI	GGNCC	1 cut(s)	184
PsuI	RGATCY	6 cut(s)	52, 61, 97, 109, 130, 145
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	33, 44
Sau3AI	GATC	7 cut(s)	52, 61, 97, 109, 130, 145, 305
Sau96I	GGNCC	1 cut(s)	184
SetI	ASST	5 cut(s)	12, 28, 142, 221, 300
SinI	GGWCC	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	164, 205
TaqI	TCGA	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	2 cut(s)	32, 43
TspDTI	ATGAA	1 cut(s)	241
TspGWI	ACGGA	2 cut(s)	74, 192
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	184
XceI	RCATGY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.