Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

43264130 .. 43264513

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0284400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCGGTTGATCTTGGGAACAACACTTGCTCTTGCCGTCAATGGCAAATTAATTCATTCCCACGTTCACATGCTCTTACTGCAATCCAAAAGGTTGGAGTGGAACCTATGTATAGTTACATTGAGCCGTTTTACACTTGTCAAAGCTACATGGATTCCTATGCGCATGGTATTCATCCTATACCAAATATGGAGAAGTTTTATGAAGATGCAGCTAGTTCAACTTCTATTGTTAAGCCTCCATTGGTTAGGAGGCCATCCGGCTGGCCAAAATCTGTTCGAATGAAGTCTGCAGCAGAAGGAGGTACGAGGAGGCTTATCAAGTGTGGCCGGTGTGGTGAGTTGGGGTGCCACAACAAGATAACGTGTATTGCGCCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

9.05

Isoelectric Point (pI)

59.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	348
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	2 cut(s)	266, 328
AfaI	GTAC	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	222
AluBI	AGCT	2 cut(s)	147, 215
AluI	AGCT	2 cut(s)	147, 215
AoxI	GGCC	3 cut(s)	254, 266, 328
ApeKI	GCWGC	2 cut(s)	212, 293
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	2 cut(s)	166, 376
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	224, 305
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	2 cut(s)	21, 112
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	213, 294
BlsI	GCNGC	2 cut(s)	214, 295
BmiI	GGNNCC	2 cut(s)	105, 350
BmsI	GCATC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	330
BseGI	GGATG	2 cut(s)	175, 257
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	2 cut(s)	224, 305
BshFI	GGCC	3 cut(s)	256, 268, 330
BshNI	GGYRCC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	261, 331
BsnI	GGCC	3 cut(s)	256, 268, 330
Bsp119I	TTCGAA	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	256, 268, 330
BspLI	GGNNCC	2 cut(s)	105, 350
BspMAI	CTGCAG	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	330
BssAI	RCCGGY	1 cut(s)	330
BssMI	GATC	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	175, 257
BstHHI	GCGC	2 cut(s)	166, 376
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	224, 305
BstXI	CCANNNNNNTGG	2 cut(s)	95, 264
BsuRI	GGCC	3 cut(s)	256, 268, 330
BtsCI	GGATG	2 cut(s)	175, 257
Cac8I	GCNNGC	1 cut(s)	266
CfoI	GCGC	2 cut(s)	166, 376
Cfr10I	RCCGGY	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	306
CviAII	CATG	3 cut(s)	71, 151, 167
CviJI	RGCY	9 cut(s)	127, 147, 215, 238, 256, 264, 268, 316, 330
CviKI_1	RGCY	9 cut(s)	127, 147, 215, 238, 256, 264, 268, 316, 330
CviQI	GTAC	1 cut(s)	306
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	266, 328
FaeI	CATG	3 cut(s)	74, 154, 170
FatI	CATG	3 cut(s)	70, 150, 166
Fnu4HI	GCNGC	2 cut(s)	213, 294
FokI	GGATG	2 cut(s)	162, 244
Fsp4HI	GCNGC	2 cut(s)	213, 294
FspAI	RTGCGCAY	1 cut(s)	165
FspBI	CTAG	1 cut(s)	216
FspI	TGCGCA	1 cut(s)	165
GlaI	GCGC	2 cut(s)	165, 375
GluI	GCNGC	2 cut(s)	213, 294
HaeIII	GGCC	3 cut(s)	256, 268, 330
HapII	CCGG	2 cut(s)	261, 331
HhaI	GCGC	2 cut(s)	166, 376
Hin1II	CATG	3 cut(s)	74, 154, 170
Hin6I	GCGC	2 cut(s)	164, 374
HinP1I	GCGC	2 cut(s)	164, 374
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	261, 331
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	293
HpyCH4IV	ACGT	2 cut(s)	64, 365
HpyCH4V	TGCA	3 cut(s)	83, 212, 293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	64, 365
Hsp92II	CATG	3 cut(s)	74, 154, 170
HspAI	GCGC	2 cut(s)	164, 374
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	250, 274, 344
Lsp1109I	GCAGC	2 cut(s)	224, 305
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	2 cut(s)	64, 365
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	268
MluCI	AATT	2 cut(s)	48, 52
MluNI	TGGCCA	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	246, 249, 296, 303, 306
Mox20I	TGGCCA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	268
MseI	TTAA	2 cut(s)	51, 234
Msp20I	TGGCCA	1 cut(s)	268
MspI	CCGG	2 cut(s)	261, 331
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	3 cut(s)	74, 154, 170
NlaIV	GGNNCC	2 cut(s)	105, 350
NsbI	TGCGCA	1 cut(s)	165
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	214, 295
PshBI	ATTAAT	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	105, 350
PstI	CTGCAG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	307
RsaNI	GTAC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	51, 234
SatI	GCNGC	2 cut(s)	213, 294
Sau3AI	GATC	1 cut(s)	10
SetI	ASST	7 cut(s)	67, 96, 109, 149, 217, 307, 368
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	291
SfuI	TTCGAA	1 cut(s)	280
Sse9I	AATT	2 cut(s)	48, 52
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	216
TaiI	ACGT	2 cut(s)	67, 368
TaqI	TCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	48, 52
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	2 cut(s)	51, 234
Tru9I	TTAA	2 cut(s)	51, 234
TseI	GCWGC	2 cut(s)	212, 293
TspDTI	ATGAA	4 cut(s)	45, 164, 219, 299
VspI	ATTAAT	1 cut(s)	51
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.