Rh6CG410500

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
59644370 .. 59645654
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG410500.1

Sequence Viewer

Length: 1200 bp
ATGTTTAACTCGGGGCAATCCCCCCATCTTTTGGCTAAGCTTCGTCCTCGTGTCACTCCACCATTGGCTCTTCCTTGGATATCTGTGGCCCACCAGATAGACAGACACACATCCATAACACAAAATGAAACGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACAATTTTGCAGTGCAGGAAACCCGGTGAGCTTAGAGCGCGCTATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAACTGCGACACAAAGATCCACGCAGCCAACAAGCTGGCTTCGCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTGGCCCCGTTCTACGACTCACTCAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTCGACGACCGATACTTGTCCGACGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAGTACGTGTTCTCCGACATGGATCCGTATTTGGATCTGGATTACGGGGGAGTGGATCCGAAAGCTCAAACTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCCCAAACCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTCCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCATCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAACATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAGATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGAAGCCGAACGTATCTGCCGCTACGGCGTCGTTCCCTCTTTTTAG

Protein Analysis

399

Amino Acids

44.46

Weight (kDa)

6.16

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 73 - 111 4.3e-07 B-box zinc finger
zf-B_box PF00643 115 - 160 1e-06 B-box zinc finger
CCT PF06203 338 - 380 6.5e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 773, 940
Acc36I ACCTGC 1 cut(s) 1116
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 3 cut(s) 204, 331, 1087
AciI CCGC 9 cut(s) 273, 375, 457, 519, 989, 1007, 1100, 1148, 1174
AclI AACGTT 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 1 cut(s) 658
AcvI CACGTG 2 cut(s) 387, 420
AcyI GRCGYC 2 cut(s) 402, 1182
AfaI GTAC 3 cut(s) 671, 763, 1034
AfiI CCNNNNNNNGG 3 cut(s) 31, 340, 345
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 1 cut(s) 815
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 826
AluBI AGCT 7 cut(s) 40, 195, 220, 322, 731, 1019, 1094
AluI AGCT 7 cut(s) 40, 195, 220, 322, 731, 1019, 1094
Alw26I GTCTC 6 cut(s) 154, 570, 576, 584, 1097, 1102
Ama87I CYCGRG 2 cut(s) 10, 339
AoxI GGCC 4 cut(s) 87, 393, 480, 859
ApeKI GCWGC 4 cut(s) 311, 536, 623, 634
ApoI RAATTY 1 cut(s) 658
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspLEI GCGC 4 cut(s) 204, 206, 333, 1140
AspS9I GGNCC 3 cut(s) 88, 481, 775
AsuC2I CCSGG 4 cut(s) 188, 340, 341, 476
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 10, 339
AvaII GGWCC 1 cut(s) 775
AxyI CCTNAGG 1 cut(s) 648
BalI TGGCCA 1 cut(s) 861
BamHI GGATCC 3 cut(s) 688, 721, 830
BauI CACGAG 3 cut(s) 48, 229, 464
BbrPI CACGTG 2 cut(s) 387, 420
BbsI GAAGAC 1 cut(s) 1073
BbvCI CCTCAGC 1 cut(s) 452
BbvI GCAGC 4 cut(s) 323, 523, 610, 621
BccI CCATC 3 cut(s) 33, 851, 914
BceAI ACGGC 4 cut(s) 261, 506, 524, 1195
BciT130I CCWGG 1 cut(s) 828
BcnI CCSGG 4 cut(s) 188, 340, 341, 476
BcoDI GTCTC 6 cut(s) 154, 570, 576, 584, 1097, 1102
BfaI CTAG 1 cut(s) 1020
BfuAI ACCTGC 1 cut(s) 1116
BglI GCCNNNNNGGC 1 cut(s) 1179
BisI GCNGC 6 cut(s) 312, 457, 537, 624, 635, 1174
BlpI GCTNAGC 2 cut(s) 36, 1134
BlsI GCNGC 6 cut(s) 313, 458, 538, 625, 636, 1175
Bme1390I CCNGG 5 cut(s) 188, 340, 341, 476, 828
Bme18I GGWCC 1 cut(s) 775
BmeT110I CYCGRG 2 cut(s) 10, 339
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 3 cut(s) 88, 481, 775
BmiI GGNNCC 6 cut(s) 372, 483, 690, 723, 777, 832
BmrFI CCNGG 5 cut(s) 188, 340, 341, 476, 828
BmsI GCATC 4 cut(s) 221, 523, 991, 1091
BoxI GACNNNNGTC 1 cut(s) 599
BpiI GAAGAC 1 cut(s) 1073
Bpu10I CCTNAGC 1 cut(s) 452
Bpu1102I GCTNAGC 2 cut(s) 36, 1134
BpuMI CCSGG 4 cut(s) 188, 340, 341, 476
BsaAI YACGTR 3 cut(s) 387, 420, 673
BsaHI GRCGYC 2 cut(s) 402, 1182
BsaI GGTCTC 1 cut(s) 1102
BsaJI CCNNGG 4 cut(s) 74, 339, 618, 856
BsaXI ACNNNNNCTCC 2 cut(s) 662, 692
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 340, 345
Bse118I RCCGGY 1 cut(s) 459
Bse21I CCTNAGG 1 cut(s) 648
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 4 cut(s) 74, 339, 618, 856
BseGI GGATG 4 cut(s) 110, 890, 907, 982
BseLI CCNNNNNNNGG 3 cut(s) 31, 340, 345
BseMII CTCAG 3 cut(s) 466, 588, 752
BsePI GCGCGC 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 4 cut(s) 323, 523, 610, 621
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 3 cut(s) 204, 331, 1087
Bsh1285I CGRYCG 3 cut(s) 427, 559, 966
BshFI GGCC 4 cut(s) 89, 395, 482, 861
BsiEI CGRYCG 3 cut(s) 427, 559, 966
BsiHKCI CYCGRG 2 cut(s) 10, 339
BsiSI CCGG 5 cut(s) 188, 340, 460, 476, 986
BslFI GGGAC 2 cut(s) 458, 761
BslI CCNNNNNNNGG 3 cut(s) 31, 340, 345
BsmAI GTCTC 6 cut(s) 154, 570, 576, 584, 1097, 1102
BsmBI CGTCTC 4 cut(s) 570, 576, 584, 1097
BsmFI GGGAC 2 cut(s) 458, 761
BsnI GGCC 4 cut(s) 89, 395, 482, 861
Bso31I GGTCTC 1 cut(s) 1102
BsoBI CYCGRG 2 cut(s) 10, 339
Bsp1720I GCTNAGC 2 cut(s) 36, 1134
Bsp19I CCATGG 1 cut(s) 856
Bsp68I TCGCGA 1 cut(s) 1087
BspACI CCGC 9 cut(s) 273, 375, 457, 519, 989, 1007, 1100, 1148, 1174
BspANI GGCC 4 cut(s) 89, 395, 482, 861
BspCNI CTCAG 3 cut(s) 465, 589, 751
BspFNI CGCG 3 cut(s) 204, 331, 1087
BspLI GGNNCC 6 cut(s) 372, 483, 690, 723, 777, 832
BspMI ACCTGC 1 cut(s) 1116
BspQI GCTCTTC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 1102
BsrFI RCCGGY 1 cut(s) 459
BssAI RCCGGY 1 cut(s) 459
BssECI CCNNGG 4 cut(s) 74, 339, 618, 856
BssHII GCGCGC 1 cut(s) 202
BssNI GRCGYC 2 cut(s) 402, 1182
BssSI CACGAG 3 cut(s) 48, 229, 464
BssT1I CCWWGG 2 cut(s) 74, 856
Bst2BI CACGAG 3 cut(s) 48, 229, 464
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 3 cut(s) 755, 796, 866
Bst6I CTCTTC 2 cut(s) 75, 1037
BstACI GRCGYC 2 cut(s) 402, 1182
BstBAI YACGTR 3 cut(s) 387, 420, 673
BstC8I GCNNGC 5 cut(s) 204, 324, 365, 369, 461
BstDEI CTNAG 7 cut(s) 36, 196, 452, 597, 648, 738, 1134
BstDSI CCRYGG 1 cut(s) 856
BstF5I GGATG 4 cut(s) 110, 890, 907, 982
BstFNI CGCG 3 cut(s) 204, 331, 1087
BstHHI GCGC 4 cut(s) 204, 206, 333, 1140
BstMAI GTCTC 6 cut(s) 154, 570, 576, 584, 1097, 1102
BstMCI CGRYCG 3 cut(s) 427, 559, 966
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 931
BstPAI GACNNNNGTC 1 cut(s) 599
BstSCI CCNGG 5 cut(s) 186, 338, 339, 474, 826
BstUI CGCG 3 cut(s) 204, 331, 1087
BstV1I GCAGC 4 cut(s) 323, 523, 610, 621
BstV2I GAAGAC 1 cut(s) 1073
BstX2I RGATCY 7 cut(s) 303, 652, 688, 700, 721, 830, 946
BstXI CCANNNNNNTGG 1 cut(s) 322
BstYI RGATCY 7 cut(s) 303, 652, 688, 700, 721, 830, 946
Bsu36I CCTNAGG 1 cut(s) 648
BsuRI GGCC 4 cut(s) 89, 395, 482, 861
BtgI CCRYGG 1 cut(s) 856
BtgZI GCGATG 1 cut(s) 1068
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 4 cut(s) 110, 890, 907, 982
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 181, 862
BtuMI TCGCGA 1 cut(s) 1087
BveI ACCTGC 1 cut(s) 1116
Cac8I GCNNGC 5 cut(s) 204, 324, 365, 369, 461
CfoI GCGC 4 cut(s) 204, 206, 333, 1140
Cfr10I RCCGGY 1 cut(s) 459
Cfr13I GGNCC 3 cut(s) 88, 481, 775
Cfr9I CCCGGG 1 cut(s) 339
CseI GACGC 4 cut(s) 403, 410, 898, 1171
Csp6I GTAC 3 cut(s) 670, 762, 1033
CviAII CATG 3 cut(s) 685, 857, 928
CviQI GTAC 3 cut(s) 670, 762, 1033
DdeI CTNAG 7 cut(s) 36, 196, 452, 597, 648, 738, 1134
DrdI GACNNNNNNGTC 2 cut(s) 773, 940
DseDI GACNNNNNNGTC 2 cut(s) 773, 940
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 2 cut(s) 75, 1037
EarI CTCTTC 2 cut(s) 75, 1037
EciI GGCGGA 1 cut(s) 1022
Eco130I CCWWGG 2 cut(s) 74, 856
Eco31I GGTCTC 1 cut(s) 1102
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 775
Eco72I CACGTG 2 cut(s) 387, 420
Eco81I CCTNAGG 1 cut(s) 648
Eco88I CYCGRG 2 cut(s) 10, 339
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 74, 856
ErhI CCWWGG 2 cut(s) 74, 856
Esp3I CGTCTC 4 cut(s) 570, 576, 584, 1097
FaeI CATG 3 cut(s) 688, 860, 931
FaiI YATR 8 cut(s) 116, 209, 686, 849, 858, 899, 929, 1098
FaqI GGGAC 2 cut(s) 458, 761
FatI CATG 3 cut(s) 684, 856, 927
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 6 cut(s) 312, 457, 537, 624, 635, 1174
FokI GGATG 4 cut(s) 97, 877, 914, 969
Fsp4HI GCNGC 6 cut(s) 312, 457, 537, 624, 635, 1174
FspBI CTAG 1 cut(s) 1020
GlaI GCGC 4 cut(s) 203, 205, 332, 1139
GluI GCNGC 6 cut(s) 312, 457, 537, 624, 635, 1174
HaeIII GGCC 4 cut(s) 89, 395, 482, 861
HapII CCGG 5 cut(s) 188, 340, 460, 476, 986
HgaI GACGC 4 cut(s) 403, 410, 898, 1171
HhaI GCGC 4 cut(s) 204, 206, 333, 1140
Hin1I GRCGYC 2 cut(s) 402, 1182
Hin1II CATG 3 cut(s) 688, 860, 931
Hin6I GCGC 4 cut(s) 202, 204, 331, 1138
HinP1I GCGC 4 cut(s) 202, 204, 331, 1138
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HindIII AAGCTT 2 cut(s) 38, 1092
HinfI GANTC 8 cut(s) 227, 250, 269, 471, 494, 512, 1072, 1116
HpaII CCGG 5 cut(s) 188, 340, 460, 476, 986
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 289, 544
Hpy188I TCNGA 8 cut(s) 508, 532, 571, 657, 682, 726, 946, 996
Hpy188III TCNNGA 5 cut(s) 704, 740, 1013, 1063, 1086
Hpy8I GTNNAC 2 cut(s) 289, 544
Hpy99I CGWCG 7 cut(s) 247, 401, 404, 557, 575, 914, 1187
HpyAV CCTTC 1 cut(s) 849
HpyCH4III ACNGT 3 cut(s) 755, 796, 866
HpyCH4IV ACGT 6 cut(s) 131, 381, 386, 419, 672, 1165
HpyCH4V TGCA 5 cut(s) 174, 179, 234, 390, 784
HpyF3I CTNAG 7 cut(s) 36, 196, 452, 597, 648, 738, 1134
HpySE526I ACGT 6 cut(s) 131, 381, 386, 419, 672, 1165
Hsp92I GRCGYC 2 cut(s) 402, 1182
Hsp92II CATG 3 cut(s) 688, 860, 931
HspAI GCGC 4 cut(s) 202, 204, 331, 1138
KroI GCCGGC 1 cut(s) 459
KroNI GCCGGC 1 cut(s) 461
LguI GCTCTTC 1 cut(s) 75
LmnI GCTCC 3 cut(s) 376, 642, 745
Lsp1109I GCAGC 4 cut(s) 323, 523, 610, 621
LweI GCATC 4 cut(s) 221, 523, 991, 1091
MaeI CTAG 1 cut(s) 1020
MaeII ACGT 6 cut(s) 131, 381, 386, 419, 672, 1165
MaeIII GTNAC 4 cut(s) 52, 382, 415, 1076
MboII GAAGA 3 cut(s) 62, 1054, 1078
MflI RGATCY 7 cut(s) 303, 652, 688, 700, 721, 830, 946
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 2 cut(s) 167, 658
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 6 cut(s) 221, 244, 263, 480, 488, 506
MmeI TCCRAC 2 cut(s) 594, 705
Mox20I TGGCCA 1 cut(s) 861
MroNI GCCGGC 1 cut(s) 459
MscI TGGCCA 1 cut(s) 861
MseI TTAA 2 cut(s) 6, 869
Msp20I TGGCCA 1 cut(s) 861
MspI CCGG 5 cut(s) 188, 340, 460, 476, 986
MspR9I CCNGG 5 cut(s) 188, 340, 341, 476, 828
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 3 cut(s) 204, 331, 1087
NaeI GCCGGC 1 cut(s) 461
NciI CCSGG 4 cut(s) 188, 340, 341, 476
NcoI CCATGG 1 cut(s) 856
NgoMIV GCCGGC 1 cut(s) 459
NlaIII CATG 3 cut(s) 688, 860, 931
NlaIV GGNNCC 6 cut(s) 372, 483, 690, 723, 777, 832
NmeAIII GCCGAG 2 cut(s) 287, 643
NmuCI GTSAC 3 cut(s) 52, 382, 415
NruI TCGCGA 1 cut(s) 1087
NspI RCATGY 1 cut(s) 931
PauI GCGCGC 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 2 cut(s) 245, 678
PdiI GCCGGC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 1072, 1116
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 6 cut(s) 313, 458, 538, 625, 636, 1175
Ple19I CGATCG 1 cut(s) 966
PleI GAGTC 6 cut(s) 221, 244, 263, 479, 488, 506
PmaCI CACGTG 2 cut(s) 387, 420
PmlI CACGTG 2 cut(s) 387, 420
PpsI GAGTC 6 cut(s) 221, 244, 263, 479, 488, 506
Ppu21I YACGTR 3 cut(s) 387, 420, 673
PshAI GACNNNNGTC 1 cut(s) 599
Psp1406I AACGTT 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 826
PspCI CACGTG 2 cut(s) 387, 420
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 6 cut(s) 372, 483, 690, 723, 777, 832
PspPI GGNCC 3 cut(s) 88, 481, 775
PsuI RGATCY 7 cut(s) 303, 652, 688, 700, 721, 830, 946
PteI GCGCGC 1 cut(s) 202
PvuI CGATCG 1 cut(s) 966
RruI TCGCGA 1 cut(s) 1087
RsaI GTAC 3 cut(s) 671, 763, 1034
RsaNI GTAC 3 cut(s) 670, 762, 1033
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 2 cut(s) 6, 869
SatI GCNGC 6 cut(s) 312, 457, 537, 624, 635, 1174
Sau96I GGNCC 3 cut(s) 88, 481, 775
SchI GAGTC 6 cut(s) 221, 244, 263, 480, 488, 506
ScrFI CCNGG 5 cut(s) 188, 340, 341, 476, 828
SfaNI GCATC 4 cut(s) 221, 523, 991, 1091
SinI GGWCC 1 cut(s) 775
SmaI CCCGGG 1 cut(s) 341
Sse9I AATT 2 cut(s) 167, 658
SsiI CCGC 9 cut(s) 273, 375, 457, 519, 989, 1007, 1100, 1148, 1174
SspMI CTAG 1 cut(s) 1020
StyD4I CCNGG 5 cut(s) 186, 338, 339, 474, 826
StyI CCWWGG 2 cut(s) 74, 856
TaaI ACNGT 3 cut(s) 755, 796, 866
TaiI ACGT 6 cut(s) 134, 384, 389, 422, 675, 1168
TaqI TCGA 5 cut(s) 215, 552, 962, 1062, 1155
TaqII GACCGA 2 cut(s) 441, 573
TasI AATT 2 cut(s) 167, 658
TauI GCSGC 2 cut(s) 459, 1176
TfiI GAWTC 2 cut(s) 1072, 1116
Tru1I TTAA 2 cut(s) 6, 869
Tru9I TTAA 2 cut(s) 6, 869
TscAI CASTG 2 cut(s) 181, 869
TseFI GTSAC 3 cut(s) 52, 382, 415
TseI GCWGC 4 cut(s) 311, 536, 623, 634
Tsp45I GTSAC 3 cut(s) 52, 382, 415
TspDTI ATGAA 2 cut(s) 141, 990
TspGWI ACGGA 6 cut(s) 588, 594, 600, 681, 783, 950
TspMI CCCGGG 1 cut(s) 339
TspRI CASTG 2 cut(s) 181, 869
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 775
XapI RAATTY 1 cut(s) 658
XceI RCATGY 1 cut(s) 931
XmaI CCCGGG 1 cut(s) 339
XspI CTAG 1 cut(s) 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.