Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Reverse (-)

2522803 .. 2523746

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g04180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGTTGAAACTCTGCGACTCGTGCAAATCGGCGACAGGGACTCTGTTCTGCCGCGCTGACTCCGCCTTCCTCTGCGTCAATTGCGATTCCAAGATCCATGCGGCCAACAAGCTCGCCTCCCGCCACGCCCGCGTCTGGCTCTGCGAGGTGTGTGAGCAAGCTCCAGCTCATGTCACATGCAAGGCCGACAACGCCGCCCTCTGCGTCACCTGCGACCGCGACATCCACTCCGCCAACCCTCTTAGCCGACGCCACGAGCGAGTCCCGGTCACGCCCTTCTACGACTCGGTGAACTCGGCCACTGATTCCGTCCCCGCTGTCAAATCCGCTGTCAACTTCCTCGACGACCGTTACTTCTCCGACGTTGACGGAGAGATCGAGGCGAGGAGGGAGGAGGCCGAGGCCGCCTCGTGGCTGCTCCCGAATCCCAAGGCGATGGAGAATCCGGATCTGAACTCGGGGCAGTACTTGTTCCCGGAAATGGATCCGTATCTGGATCTGGACTACGAGCTTGTGGATCCGAAGCTTGAAGATGCACAGGAGCAGAACAGCTGTGTCACGGACGGCGTCGTTCCGGAGCAAAGCAAGAACATGCAGCCTCAGCTCGTCAACGACCACAGCTTCGAAATCGACTTCTCCGCCGCCTCCAAGCCCTTCGTCTACGGCTACCACCACGCTCAGTGTCTGAGACAGAGTGTATCATCGTCCTCGATGGACGTCAGCATCGTGCCAGATGCCAACGCGATGACAGACGTTTCATATCCTTACAACAAGTCAATGACCTCCGCCGTGGAGTCATCACATCCGGCGGTCCAGCTCTCGTCCGCAGATCGATCGAGGCGAGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

285

Amino Acids

31.28

Weight (kDa)

4.88

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-B_box	PF00643	4 - 42	4.5e-06	B-box zinc finger
zf-B_box	PF00643	46 - 91	9.8e-07	B-box zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	4 cut(s)	57, 135, 222, 746
AccIII	TCCGGA	2 cut(s)	448, 577
AclWI	GGATC	7 cut(s)	91, 459, 482, 495, 507, 515, 528
AcoI	YGGCCR	2 cut(s)	105, 300
AcyI	GRCGYC	3 cut(s)	253, 570, 720
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	3 cut(s)	138, 414, 484
AgsI	TTSAA	2 cut(s)	10, 533
AluBI	AGCT	9 cut(s)	115, 164, 170, 514, 529, 555, 607, 624, 820
AluI	AGCT	9 cut(s)	115, 164, 170, 514, 529, 555, 607, 624, 820
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	7 cut(s)	91, 459, 482, 495, 507, 515, 528
AlwNI	CAGNNNCTG	1 cut(s)	688
Ama87I	CYCGRG	1 cut(s)	460
Aor13HI	TCCGGA	2 cut(s)	448, 577
AoxI	GGCC	5 cut(s)	105, 186, 300, 399, 405
ApeKI	GCWGC	2 cut(s)	418, 598
ArsI	GACNNNNNNTTYG	4 cut(s)	318, 350, 608, 640
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	2 cut(s)	269, 479
AsuHPI	GGTGA	2 cut(s)	202, 304
AsuII	TTCGAA	1 cut(s)	627
AvaI	CYCGRG	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	814
BamHI	GGATCC	2 cut(s)	487, 520
BauI	CACGAG	3 cut(s)	22, 257, 412
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	405, 610
BccI	CCATC	2 cut(s)	433, 709
BceAI	ACGGC	3 cut(s)	583, 682, 776
BcgI	CGANNNNNNTGC	2 cut(s)	819, 853
BcnI	CCSGG	2 cut(s)	269, 479
BcoDI	GTCTC	1 cut(s)	685
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	7 cut(s)	55, 105, 198, 408, 419, 599, 645
BlsI	GCNGC	7 cut(s)	56, 106, 199, 409, 420, 600, 646
BmcAI	AGTACT	1 cut(s)	470
Bme1390I	CCNGG	2 cut(s)	269, 479
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	2 cut(s)	489, 522
BmrFI	CCNGG	2 cut(s)	269, 479
BmsI	GCATC	3 cut(s)	526, 727, 735
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	627
BpuMI	CCSGG	2 cut(s)	269, 479
Bsa29I	ATCGAT	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	3 cut(s)	253, 570, 720
BsaJI	CCNNGG	3 cut(s)	402, 432, 792
BsaWI	WCCGGW	2 cut(s)	448, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 414, 484
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	2 cut(s)	448, 577
BseCI	ATCGAT	1 cut(s)	835
BseDI	CCNNGG	3 cut(s)	402, 432, 792
BseGI	GGATG	2 cut(s)	225, 805
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	3 cut(s)	138, 414, 484
BseMII	CTCAG	3 cut(s)	617, 680, 695
BseRI	GAGGAG	2 cut(s)	403, 410
BseXI	GCAGC	2 cut(s)	405, 610
Bsh1236I	CGCG	4 cut(s)	57, 135, 222, 746
Bsh1285I	CGRYCG	3 cut(s)	220, 352, 839
BshFI	GGCC	5 cut(s)	107, 188, 302, 401, 407
BshVI	ATCGAT	1 cut(s)	835
BsiEI	CGRYCG	3 cut(s)	220, 352, 839
BsiHKCI	CYCGRG	1 cut(s)	460
BsiSI	CCGG	5 cut(s)	269, 449, 479, 578, 809
BslFI	GGGAC	3 cut(s)	55, 251, 299
BslI	CCNNNNNNNGG	3 cut(s)	138, 414, 484
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	3 cut(s)	55, 251, 299
BsnI	GGCC	5 cut(s)	107, 188, 302, 401, 407
BsoBI	CYCGRG	1 cut(s)	460
Bsp119I	TTCGAA	1 cut(s)	627
Bsp13I	TCCGGA	2 cut(s)	448, 577
Bsp143I	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
BspANI	GGCC	5 cut(s)	107, 188, 302, 401, 407
BspCNI	CTCAG	3 cut(s)	616, 681, 694
BspDI	ATCGAT	1 cut(s)	835
BspEI	TCCGGA	2 cut(s)	448, 577
BspFNI	CGCG	4 cut(s)	57, 135, 222, 746
BspLI	GGNNCC	2 cut(s)	489, 522
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	7 cut(s)	91, 459, 482, 495, 507, 515, 528
BspT104I	TTCGAA	1 cut(s)	627
BssECI	CCNNGG	3 cut(s)	402, 432, 792
BssMI	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
BssNI	GRCGYC	3 cut(s)	253, 570, 720
BssSI	CACGAG	3 cut(s)	22, 257, 412
BssT1I	CCWWGG	1 cut(s)	432
Bst2BI	CACGAG	3 cut(s)	22, 257, 412
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	3 cut(s)	253, 570, 720
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	117, 133, 162
BstDEI	CTNAG	4 cut(s)	245, 603, 681, 689
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	225, 805
BstFNI	CGCG	4 cut(s)	57, 135, 222, 746
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	8 cut(s)	99, 381, 454, 490, 502, 523, 835, 839
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
BstMCI	CGRYCG	3 cut(s)	220, 352, 839
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 65, 84, 132, 194, 213, 407, 604
BstNSI	RCATGY	2 cut(s)	183, 598
BstSCI	CCNGG	2 cut(s)	267, 477
BstUI	CGCG	4 cut(s)	57, 135, 222, 746
BstV1I	GCAGC	2 cut(s)	405, 610
BstX2I	RGATCY	5 cut(s)	96, 451, 487, 499, 520
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	5 cut(s)	96, 451, 487, 499, 520
Bsu15I	ATCGAT	1 cut(s)	835
BsuRI	GGCC	5 cut(s)	107, 188, 302, 401, 407
BsuTUI	ATCGAT	1 cut(s)	835
BtgI	CCRYGG	1 cut(s)	792
BtgZI	GCGATG	2 cut(s)	452, 761
BtsCI	GGATG	2 cut(s)	225, 805
BtsIMutI	CAGTG	2 cut(s)	303, 689
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	3 cut(s)	117, 133, 162
CaiI	CAGNNNCTG	1 cut(s)	688
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	814
ClaI	ATCGAT	1 cut(s)	835
CseI	GACGC	5 cut(s)	67, 124, 196, 261, 559
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	4 cut(s)	101, 173, 180, 595
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	4 cut(s)	245, 603, 681, 689
DpnI	GATC	8 cut(s)	98, 380, 453, 489, 501, 522, 834, 838
DpnII	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
EaeI	YGGCCR	2 cut(s)	105, 300
EciI	GGCGGA	4 cut(s)	55, 223, 631, 778
Eco130I	CCWWGG	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	814
Eco88I	CYCGRG	1 cut(s)	460
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	104, 176, 183, 598
FaiI	YATR	5 cut(s)	102, 174, 181, 596, 763
FaqI	GGGAC	3 cut(s)	55, 251, 299
FatI	CATG	4 cut(s)	100, 172, 179, 594
FauI	CCCGC	3 cut(s)	131, 140, 325
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	7 cut(s)	55, 105, 198, 408, 419, 599, 645
FokI	GGATG	2 cut(s)	212, 792
Fsp4HI	GCNGC	7 cut(s)	55, 105, 198, 408, 419, 599, 645
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	7 cut(s)	55, 105, 198, 408, 419, 599, 645
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	107, 188, 302, 401, 407
HapII	CCGG	5 cut(s)	269, 449, 479, 578, 809
HgaI	GACGC	5 cut(s)	67, 124, 196, 261, 559
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	3 cut(s)	253, 570, 720
Hin1II	CATG	4 cut(s)	104, 176, 183, 598
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	3 cut(s)	337, 370, 613
HindII	GTYRAC	3 cut(s)	337, 370, 613
HindIII	AAGCTT	1 cut(s)	527
HpaII	CCGG	5 cut(s)	269, 449, 479, 578, 809
HphI	GGTGA	2 cut(s)	202, 304
Hpy166II	GTNNAC	5 cut(s)	295, 337, 370, 613, 664
Hpy188I	TCNGA	4 cut(s)	364, 456, 525, 690
Hpy188III	TCNNGA	5 cut(s)	424, 449, 497, 503, 578
Hpy8I	GTNNAC	5 cut(s)	295, 337, 370, 613, 664
Hpy99I	CGWCG	4 cut(s)	255, 350, 368, 575
HpyAV	CCTTC	3 cut(s)	79, 289, 667
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	3 cut(s)	366, 720, 756
HpyCH4V	TGCA	4 cut(s)	27, 183, 539, 598
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 65, 84, 132, 194, 213, 407, 604
HpyF3I	CTNAG	4 cut(s)	245, 603, 681, 689
HpySE526I	ACGT	3 cut(s)	366, 720, 756
Hsp92I	GRCGYC	3 cut(s)	253, 570, 720
Hsp92II	CATG	4 cut(s)	104, 176, 183, 598
HspAI	GCGC	1 cut(s)	57
Kpn2I	TCCGGA	2 cut(s)	448, 577
Kzo9I	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
LmnI	GCTCC	4 cut(s)	169, 426, 544, 580
Lsp1109I	GCAGC	2 cut(s)	405, 610
LweI	GCATC	3 cut(s)	526, 727, 735
MaeII	ACGT	3 cut(s)	366, 720, 756
MaeIII	GTNAC	5 cut(s)	175, 208, 271, 353, 559
MalI	GATC	8 cut(s)	98, 380, 453, 489, 501, 522, 834, 838
MboI	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
MboII	GAAGA	1 cut(s)	545
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	5 cut(s)	96, 451, 487, 499, 520
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	6 cut(s)	14, 37, 56, 273, 281, 806
MmeI	TCCRAC	1 cut(s)	387
MroI	TCCGGA	2 cut(s)	448, 577
MspA1I	CMGCKG	3 cut(s)	320, 332, 555
MspI	CCGG	5 cut(s)	269, 449, 479, 578, 809
MspR9I	CCNGG	2 cut(s)	269, 479
MunI	CAATTG	1 cut(s)	82
MvnI	CGCG	4 cut(s)	57, 135, 222, 746
MwoI	GCNNNNNNNGC	8 cut(s)	24, 65, 84, 132, 194, 213, 407, 604
NciI	CCSGG	2 cut(s)	269, 479
NdeII	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
NlaIII	CATG	4 cut(s)	104, 176, 183, 598
NlaIV	GGNNCC	2 cut(s)	489, 522
NmeAIII	GCCGAG	2 cut(s)	278, 427
NmuCI	GTSAC	4 cut(s)	175, 208, 271, 559
NspI	RCATGY	2 cut(s)	183, 598
NspV	TTCGAA	1 cut(s)	627
PaqCI	CACCTGC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	4 cut(s)	259, 378, 726, 841
PfeI	GAWTC	4 cut(s)	89, 308, 427, 445
PflFI	GACNNNGTC	1 cut(s)	569
PfoI	TCCNGGA	1 cut(s)	477
PkrI	GCNGC	7 cut(s)	56, 106, 199, 409, 420, 600, 646
Ple19I	CGATCG	1 cut(s)	839
PleI	GAGTC	6 cut(s)	14, 37, 56, 272, 281, 805
PpsI	GAGTC	6 cut(s)	14, 37, 56, 272, 281, 805
PspN4I	GGNNCC	2 cut(s)	489, 522
PspPI	GGNCC	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	688
PsuI	RGATCY	5 cut(s)	96, 451, 487, 499, 520
PsyI	GACNNNGTC	1 cut(s)	569
PvuI	CGATCG	1 cut(s)	839
PvuII	CAGCTG	1 cut(s)	555
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SatI	GCNGC	7 cut(s)	55, 105, 198, 408, 419, 599, 645
Sau3AI	GATC	8 cut(s)	96, 378, 451, 487, 499, 520, 832, 836
Sau96I	GGNCC	1 cut(s)	814
ScaI	AGTACT	1 cut(s)	470
SchI	GAGTC	6 cut(s)	14, 37, 56, 273, 281, 806
ScrFI	CCNGG	2 cut(s)	269, 479
SfaNI	GCATC	3 cut(s)	526, 727, 735
SfuI	TTCGAA	1 cut(s)	627
SinI	GGWCC	1 cut(s)	814
Sse9I	AATT	1 cut(s)	82
StyD4I	CCNGG	2 cut(s)	267, 477
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	3 cut(s)	369, 723, 759
TaqI	TCGA	7 cut(s)	345, 381, 627, 633, 713, 835, 839
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	5 cut(s)	57, 107, 200, 410, 647
TfiI	GAWTC	4 cut(s)	89, 308, 427, 445
TscAI	CASTG	2 cut(s)	310, 689
TseFI	GTSAC	4 cut(s)	175, 208, 271, 559
TseI	GCWGC	2 cut(s)	418, 598
Tsp45I	GTSAC	4 cut(s)	175, 208, 271, 559
TspDTI	ATGAA	1 cut(s)	750
TspGWI	ACGGA	4 cut(s)	301, 387, 480, 578
TspRI	CASTG	2 cut(s)	310, 689
Tth111I	GACNNNGTC	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	814
XceI	RCATGY	2 cut(s)	183, 598
XmiI	GTMKAC	1 cut(s)	663
ZraI	GACGTC	1 cut(s)	721
ZrmI	AGTACT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.