MD15G1045000.v1.1

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
3077568 .. 3079004
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1045000.v1.1.491

Sequence Viewer

Length: 1023 bp
ATGGCGTTGAAGCTTTGCGACTCGTGCAAATCGGCGACAGGGACTCTGTTCTGCCGCGCTGACTCCGCCTTCCTCTGCGTCAATTGCGACTCCAAGATCCATGCGGCCAACAAACTCGCCTCCCGCCACGCCCGCGTCTGGCTCTGCGAGGTGTGTGAGCAAGCTCCAGCTCACGTCACATGCAAGGCCGACGACGCCGCCCTCTGCGTCACCTGCGACCGCGACATCCACTCCGCCAACCCTCTTAGCCGACGCCACGAGCGAGTCCCAGTCACGCCCTTCTACGACTCGGTGAACTCGGCCACCGATTCCGTCCCCGCTGTCAAATCCGCTGTTAACTTCCTCAACGACCGTTACTTCTCCGACGTTGACGGAGAGATCGAGGCGAGGAGGGAGGAGGCCGAGGCCGCCTCGTGGCTGCTCCCGAACCCCAAGGCGATGGAGAATCCGGATCTGAACTCGGGGCAGTACTTGTTCCCGGAAATGGATCCGTATATGGATCTGGACTACGGGCATGTGGATCCGAAGCTTGAAGATGCTCAGGAGCAGAACAGCTGCATCACGGACGGCGTCGTTCCGGAGCAAAGCAAGAACATGCAGCCTCAGCTCGTCAACGACCACAGCTTCGAAATCGACTTCTCCGCCGCCTCCAAGCCCTTCGTCTACGGCTACCACCACGCTCAGTGTCTGAGACAGAGTGTTTCATCGTCCTCGATGGACGTCAGCATCGTGCCAGATGACAACGCGATGACAGACGATTCAAATCCTTACAACAAGTCAATGACCTCCGCCGTCGAGTCATCACATCCGGCGGTCCAGCTCTCCTCCGCAGATCGCGAGGCGAGGGTGCTGAGGTACAGAGAGAAGCGGAAGAACCGAAAGTTCGAGAAGACGATACGGTACGCTTCGAGAAAAGCGTACGCGGAGACCCGCCCGCGAATCAAAGGCAGGTTCGCGAAGCGCACGGAGGTGGAGATCGAAGCGGAGCCGATGTGCCGCTACGGCATCGTTCCGTCGTTTTAG

Protein Analysis

341

Amino Acids

38.14

Weight (kDa)

5.74

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 43 3e-06 B-box zinc finger
zf-B_box PF00643 46 - 91 8.4e-07 B-box zinc finger
CCT PF06203 279 - 321 5.2e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
AatII GACGTC 1 cut(s) 723
Acc36I ACCTGC 2 cut(s) 221, 939
AccI GTMKAC 1 cut(s) 663
AccII CGCG 8 cut(s) 57, 135, 222, 746, 837, 923, 937, 956
AccIII TCCGGA 2 cut(s) 448, 577
AclWI GGATC 7 cut(s) 91, 459, 482, 495, 507, 515, 528
AcoI YGGCCR 2 cut(s) 105, 300
AcyI GRCGYC 4 cut(s) 195, 253, 570, 720
AfaI GTAC 4 cut(s) 470, 857, 902, 920
AfiI CCNNNNNNNGG 3 cut(s) 138, 414, 484
AgsI TTSAA 3 cut(s) 10, 533, 762
AjiI CACGTC 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 968
AluBI AGCT 8 cut(s) 13, 164, 170, 529, 555, 607, 624, 820
AluI AGCT 8 cut(s) 13, 164, 170, 529, 555, 607, 624, 820
Alw26I GTCTC 2 cut(s) 685, 920
AlwI GGATC 7 cut(s) 91, 459, 482, 495, 507, 515, 528
AlwNI CAGNNNCTG 1 cut(s) 688
Ama87I CYCGRG 1 cut(s) 460
Aor13HI TCCGGA 2 cut(s) 448, 577
AoxI GGCC 5 cut(s) 105, 186, 300, 399, 405
ApeKI GCWGC 3 cut(s) 418, 555, 598
ArsI GACNNNNNNTTYG 2 cut(s) 608, 640
AspLEI GCGC 2 cut(s) 59, 963
AspS9I GGNCC 1 cut(s) 814
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 202, 304
AsuII TTCGAA 1 cut(s) 627
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 1 cut(s) 814
BamHI GGATCC 2 cut(s) 487, 520
BauI CACGAG 3 cut(s) 22, 257, 412
BbsI GAAGAC 1 cut(s) 896
BbvCI CCTCAGC 2 cut(s) 603, 851
BbvI GCAGC 3 cut(s) 405, 542, 610
BccI CCATC 2 cut(s) 433, 709
BceAI ACGGC 4 cut(s) 583, 682, 776, 1018
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 685, 920
BfuAI ACCTGC 2 cut(s) 221, 939
BglI GCCNNNNNGGC 1 cut(s) 1002
BisI GCNGC 9 cut(s) 55, 105, 198, 408, 419, 556, 599, 645, 997
BlsI GCNGC 9 cut(s) 56, 106, 199, 409, 420, 557, 600, 646, 998
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 460
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 814
BmiI GGNNCC 3 cut(s) 489, 522, 987
BmrFI CCNGG 1 cut(s) 479
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 4 cut(s) 526, 567, 735, 1014
BmuI ACTGGG 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 896
BplI GAGNNNNNCTC 2 cut(s) 395, 427
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 3 cut(s) 540, 603, 851
Bpu14I TTCGAA 1 cut(s) 627
BpuMI CCSGG 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 4 cut(s) 195, 253, 570, 720
BsaI GGTCTC 1 cut(s) 920
BsaJI CCNNGG 2 cut(s) 402, 432
BsaWI WCCGGW 2 cut(s) 448, 577
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 977, 1007
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 414, 484
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 2 cut(s) 448, 577
BseDI CCNNGG 2 cut(s) 402, 432
BseGI GGATG 2 cut(s) 225, 805
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 3 cut(s) 138, 414, 484
BseMII CTCAG 5 cut(s) 554, 617, 680, 695, 842
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 403, 410, 814
BseXI GCAGC 3 cut(s) 405, 542, 610
Bsh1236I CGCG 8 cut(s) 57, 135, 222, 746, 837, 923, 937, 956
Bsh1285I CGRYCG 2 cut(s) 220, 352
BshFI GGCC 5 cut(s) 107, 188, 302, 401, 407
BsiEI CGRYCG 2 cut(s) 220, 352
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 4 cut(s) 449, 479, 578, 809
BsiWI CGTACG 1 cut(s) 918
BslFI GGGAC 3 cut(s) 55, 251, 299
BslI CCNNNNNNNGG 3 cut(s) 138, 414, 484
BsmAI GTCTC 2 cut(s) 685, 920
BsmFI GGGAC 3 cut(s) 55, 251, 299
BsnI GGCC 5 cut(s) 107, 188, 302, 401, 407
Bso31I GGTCTC 1 cut(s) 920
BsoBI CYCGRG 1 cut(s) 460
Bsp119I TTCGAA 1 cut(s) 627
Bsp13I TCCGGA 2 cut(s) 448, 577
Bsp143I GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
Bsp68I TCGCGA 2 cut(s) 837, 956
BspANI GGCC 5 cut(s) 107, 188, 302, 401, 407
BspCNI CTCAG 5 cut(s) 553, 616, 681, 694, 843
BspEI TCCGGA 2 cut(s) 448, 577
BspFNI CGCG 8 cut(s) 57, 135, 222, 746, 837, 923, 937, 956
BspLI GGNNCC 3 cut(s) 489, 522, 987
BspMI ACCTGC 2 cut(s) 221, 939
BspPI GGATC 7 cut(s) 91, 459, 482, 495, 507, 515, 528
BspT104I TTCGAA 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 920
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 402, 432
BssMI GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
BssNI GRCGYC 4 cut(s) 195, 253, 570, 720
BssSI CACGAG 3 cut(s) 22, 257, 412
BssT1I CCWWGG 1 cut(s) 432
Bst2BI CACGAG 3 cut(s) 22, 257, 412
Bst4CI ACNGT 2 cut(s) 353, 900
BstACI GRCGYC 4 cut(s) 195, 253, 570, 720
BstBI TTCGAA 1 cut(s) 627
BstC8I GCNNGC 3 cut(s) 133, 162, 935
BstDEI CTNAG 6 cut(s) 245, 540, 603, 681, 689, 851
BstF5I GGATG 2 cut(s) 225, 805
BstFNI CGCG 8 cut(s) 57, 135, 222, 746, 837, 923, 937, 956
BstHHI GCGC 2 cut(s) 59, 963
BstKTI GATC 8 cut(s) 99, 381, 454, 490, 502, 523, 835, 978
BstMAI GTCTC 2 cut(s) 685, 920
BstMBI GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
BstMCI CGRYCG 2 cut(s) 220, 352
BstMWI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 132, 194, 213, 407, 604, 1002
BstNSI RCATGY 3 cut(s) 183, 518, 598
BstSCI CCNGG 1 cut(s) 477
BstUI CGCG 8 cut(s) 57, 135, 222, 746, 837, 923, 937, 956
BstV1I GCAGC 3 cut(s) 405, 542, 610
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 5 cut(s) 96, 451, 487, 499, 520
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 5 cut(s) 96, 451, 487, 499, 520
BsuRI GGCC 5 cut(s) 107, 188, 302, 401, 407
BtgZI GCGATG 2 cut(s) 452, 761
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 2 cut(s) 225, 805
BtsIMutI CAGTG 1 cut(s) 689
BtuMI TCGCGA 2 cut(s) 837, 956
BveI ACCTGC 2 cut(s) 221, 939
Cac8I GCNNGC 3 cut(s) 133, 162, 935
CaiI CAGNNNCTG 1 cut(s) 688
CfoI GCGC 2 cut(s) 59, 963
Cfr13I GGNCC 1 cut(s) 814
CseI GACGC 6 cut(s) 67, 124, 196, 203, 261, 559
Csp6I GTAC 4 cut(s) 469, 856, 901, 919
CviAII CATG 4 cut(s) 101, 180, 515, 595
CviQI GTAC 4 cut(s) 469, 856, 901, 919
DdeI CTNAG 6 cut(s) 245, 540, 603, 681, 689, 851
DpnI GATC 8 cut(s) 98, 380, 453, 489, 501, 522, 834, 977
DpnII GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
EaeI YGGCCR 2 cut(s) 105, 300
EciI GGCGGA 4 cut(s) 55, 223, 631, 778
Eco130I CCWWGG 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 920
Eco47I GGWCC 1 cut(s) 814
Eco88I CYCGRG 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 104, 183, 518, 598
FaiI YATR 6 cut(s) 102, 181, 495, 497, 516, 596
FaqI GGGAC 3 cut(s) 55, 251, 299
FatI CATG 4 cut(s) 100, 179, 514, 594
FauI CCCGC 5 cut(s) 131, 140, 325, 938, 942
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 9 cut(s) 55, 105, 198, 408, 419, 556, 599, 645, 997
FokI GGATG 2 cut(s) 212, 792
Fsp4HI GCNGC 9 cut(s) 55, 105, 198, 408, 419, 556, 599, 645, 997
GlaI GCGC 2 cut(s) 58, 962
GluI GCNGC 9 cut(s) 55, 105, 198, 408, 419, 556, 599, 645, 997
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 5 cut(s) 107, 188, 302, 401, 407
HapII CCGG 4 cut(s) 449, 479, 578, 809
HgaI GACGC 6 cut(s) 67, 124, 196, 203, 261, 559
HhaI GCGC 2 cut(s) 59, 963
Hin1I GRCGYC 4 cut(s) 195, 253, 570, 720
Hin1II CATG 4 cut(s) 104, 183, 518, 598
Hin6I GCGC 2 cut(s) 57, 961
HinP1I GCGC 2 cut(s) 57, 961
HincII GTYRAC 3 cut(s) 337, 370, 613
HindII GTYRAC 3 cut(s) 337, 370, 613
HindIII AAGCTT 2 cut(s) 11, 527
HpaI GTTAAC 1 cut(s) 337
HpaII CCGG 4 cut(s) 449, 479, 578, 809
HphI GGTGA 2 cut(s) 202, 304
Hpy166II GTNNAC 5 cut(s) 295, 337, 370, 613, 664
Hpy188I TCNGA 4 cut(s) 364, 456, 525, 690
Hpy188III TCNNGA 9 cut(s) 424, 449, 503, 542, 578, 836, 886, 909, 955
Hpy8I GTNNAC 5 cut(s) 295, 337, 370, 613, 664
Hpy99I CGWCG 7 cut(s) 194, 197, 255, 368, 575, 797, 1018
HpyAV CCTTC 3 cut(s) 79, 289, 667
HpyCH4III ACNGT 2 cut(s) 353, 900
HpyCH4IV ACGT 3 cut(s) 174, 366, 720
HpyCH4V TGCA 4 cut(s) 27, 183, 558, 598
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 132, 194, 213, 407, 604, 1002
HpyF3I CTNAG 6 cut(s) 245, 540, 603, 681, 689, 851
HpySE526I ACGT 3 cut(s) 174, 366, 720
Hsp92I GRCGYC 4 cut(s) 195, 253, 570, 720
Hsp92II CATG 4 cut(s) 104, 183, 518, 598
HspAI GCGC 2 cut(s) 57, 961
Kpn2I TCCGGA 2 cut(s) 448, 577
KspAI GTTAAC 1 cut(s) 337
Kzo9I GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
LmnI GCTCC 5 cut(s) 169, 426, 544, 580, 985
Lsp1109I GCAGC 3 cut(s) 405, 542, 610
LweI GCATC 4 cut(s) 526, 567, 735, 1014
MaeII ACGT 3 cut(s) 174, 366, 720
MaeIII GTNAC 4 cut(s) 175, 208, 271, 353
MalI GATC 8 cut(s) 98, 380, 453, 489, 501, 522, 834, 977
MboI GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
MboII GAAGA 3 cut(s) 545, 883, 901
MfeI CAATTG 1 cut(s) 82
MflI RGATCY 5 cut(s) 96, 451, 487, 499, 520
MluCI AATT 1 cut(s) 82
MlyI GAGTC 7 cut(s) 14, 37, 56, 83, 273, 281, 806
MmeI TCCRAC 1 cut(s) 387
MroI TCCGGA 2 cut(s) 448, 577
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 3 cut(s) 320, 332, 555
MspI CCGG 4 cut(s) 449, 479, 578, 809
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 1 cut(s) 82
MvnI CGCG 8 cut(s) 57, 135, 222, 746, 837, 923, 937, 956
MwoI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 132, 194, 213, 407, 604, 1002
NciI CCSGG 1 cut(s) 479
NdeII GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
NlaIII CATG 4 cut(s) 104, 183, 518, 598
NlaIV GGNNCC 3 cut(s) 489, 522, 987
NmeAIII GCCGAG 2 cut(s) 278, 427
NmuCI GTSAC 3 cut(s) 175, 208, 271
NruI TCGCGA 2 cut(s) 837, 956
NspI RCATGY 3 cut(s) 183, 518, 598
NspV TTCGAA 1 cut(s) 627
OliI CACNNNNGTG 1 cut(s) 968
PaqCI CACCTGC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 4 cut(s) 259, 378, 726, 914
PfeI GAWTC 4 cut(s) 308, 445, 758, 939
Pfl23II CGTACG 1 cut(s) 918
PflFI GACNNNGTC 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 477
PkrI GCNGC 9 cut(s) 56, 106, 199, 409, 420, 557, 600, 646, 998
PleI GAGTC 7 cut(s) 14, 37, 56, 83, 272, 281, 805
PpsI GAGTC 7 cut(s) 14, 37, 56, 83, 272, 281, 805
PspLI CGTACG 1 cut(s) 918
PspN4I GGNNCC 3 cut(s) 489, 522, 987
PspPI GGNCC 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 5 cut(s) 96, 451, 487, 499, 520
PsyI GACNNNGTC 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 555
RruI TCGCGA 2 cut(s) 837, 956
RsaI GTAC 4 cut(s) 470, 857, 902, 920
RsaNI GTAC 4 cut(s) 469, 856, 901, 919
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 9 cut(s) 55, 105, 198, 408, 419, 556, 599, 645, 997
Sau3AI GATC 8 cut(s) 96, 378, 451, 487, 499, 520, 832, 975
Sau96I GGNCC 1 cut(s) 814
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 7 cut(s) 14, 37, 56, 83, 273, 281, 806
ScrFI CCNGG 1 cut(s) 479
SfaNI GCATC 4 cut(s) 526, 567, 735, 1014
SfuI TTCGAA 1 cut(s) 627
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 1 cut(s) 968
Sse9I AATT 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 2 cut(s) 353, 900
TaiI ACGT 3 cut(s) 177, 369, 723
TaqI TCGA 8 cut(s) 381, 627, 633, 713, 795, 885, 908, 978
TasI AATT 1 cut(s) 82
TatI WGTACW 1 cut(s) 468
TauI GCSGC 6 cut(s) 57, 107, 200, 410, 647, 999
TfiI GAWTC 4 cut(s) 308, 445, 758, 939
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 689
TseFI GTSAC 3 cut(s) 175, 208, 271
TseI GCWGC 3 cut(s) 418, 555, 598
Tsp45I GTSAC 3 cut(s) 175, 208, 271
TspDTI ATGAA 1 cut(s) 693
TspGWI ACGGA 6 cut(s) 301, 387, 480, 578, 980, 1002
TspRI CASTG 1 cut(s) 689
Tth111I GACNNNGTC 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 814
XceI RCATGY 3 cut(s) 183, 518, 598
XmiI GTMKAC 1 cut(s) 663
ZraI GACGTC 1 cut(s) 721
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.