Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002665

Physical Location & Seq

Genomic Coordinates Forward (+)

74866722 .. 74867120

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34431

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAGAGTTCTGGTGGCTCCATTCTACGACTCGCTGAACTCGAACGACTCAACCGCCGTCAAATCTGAGGCTGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGACGTAGACGTAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCTGAGGCTGCATCGTGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACGTGTTCTCCGACATGGATCTGGATTACGGGGCAGTGGATCCAAAAGCTCCAGATCAGGAGGAGCAGAACAGTAGCGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCGTCAAAGCTTTGAAATGGAGTTGCCAACTTCCAAGCCTTTCATCTACGGCTACCATGGCCACTATTTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

132

Amino Acids

14.63

Weight (kDa)

4.05

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24930
fragaria_vesca	FvH4_2g41420 FvH4_2g41420
malus_domestica	MD08G1049600.v1.1 MD15G1045000.v1.1
prunus_persica	Prupe.1G019200_v2.0.a1 Prupe.1G398700_v2.0.a1 Prupe.1G398700_v2.0.a1
pyrus_communis	pycom01g05670 pycom08g04150 pycom15g04180
rosa_chinensis	RchiOBHm_Chr3g0493071 RchiOBHm_Chr4g0429731 RchiOBHm_Chr4g0429741 RchiOBHm_Chr5g0033381 RchiOBHm_Chr5g0037591 RchiOBHm_Chr5g0068911 RchiOBHm_Chr5g0068921 RchiOBHm_Chr6g0299051
rosa_laevigata	RLG00000011466 RLG00000027505 RLG00000031917 RLG00000032258
rosa_multiflora	Rmu_co8169200.1_g000001 Rmu_co8181194.1_g000001 Rmu_sc0000981.1_g000006
rosa_roxburghii	Rroxscaffold_7G00169050
rosa_rugosa	Rorug06G0219600 Rorug06G0284400
rosa_samantha	Rh3AG308000 Rh3CG322500 Rh3DG321400 Rh5AG231500 Rh5AG254900 Rh6AG395900 Rh6BG404500 Rh6CG410500 Rh6DG397100
rosa_wichuraiana	Rw4G030090 Rw6G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccI	GTMKAC	2 cut(s)	111, 117
AciI	CCGC	4 cut(s)	54, 74, 94, 282
AclWI	GGATC	5 cut(s)	173, 195, 231, 239, 252
AcoI	YGGCCR	1 cut(s)	382
AfaI	GTAC	2 cut(s)	206, 286
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	338
AluBI	AGCT	4 cut(s)	152, 254, 333, 396
AluI	AGCT	4 cut(s)	152, 254, 333, 396
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	5 cut(s)	173, 195, 231, 239, 252
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	3 cut(s)	71, 158, 169
AspS9I	GGNCC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	58, 145, 156
BceAI	ACGGC	2 cut(s)	41, 388
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	397
BisI	GCNGC	3 cut(s)	72, 159, 170
BlsI	GCNGC	3 cut(s)	73, 160, 171
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	18, 246, 300
BmsI	GCATC	1 cut(s)	170
BoxI	GACNNNNGTC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	379
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
BseDI	CCNNGG	1 cut(s)	379
BseMII	CTCAG	3 cut(s)	57, 123, 144
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	3 cut(s)	58, 145, 156
BshFI	GGCC	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	5 cut(s)	178, 187, 223, 244, 259
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	4 cut(s)	54, 74, 94, 282
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	58, 124, 145
BspLI	GGNNCC	3 cut(s)	18, 246, 300
BspPI	GGATC	5 cut(s)	173, 195, 231, 239, 252
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	178, 187, 223, 244, 259
BssT1I	CCWWGG	1 cut(s)	379
Bst4CI	ACNGT	2 cut(s)	278, 319
BstBAI	YACGTR	1 cut(s)	208
BstDEI	CTNAG	3 cut(s)	66, 132, 153
BstDSI	CCRYGG	1 cut(s)	379
BstKTI	GATC	5 cut(s)	181, 190, 226, 247, 262
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	5 cut(s)	178, 187, 223, 244, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 381
BstPAI	GACNNNNGTC	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	58, 145, 156
BstX2I	RGATCY	4 cut(s)	178, 187, 223, 244
BstYI	RGATCY	4 cut(s)	178, 187, 223, 244
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	205, 285
CviAII	CATG	2 cut(s)	220, 380
CviQI	GTAC	2 cut(s)	205, 285
DdeI	CTNAG	3 cut(s)	66, 132, 153
DpnI	GATC	5 cut(s)	180, 189, 225, 246, 261
DpnII	GATC	5 cut(s)	178, 187, 223, 244, 259
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	382
Eco130I	CCWWGG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	223, 383
FaiI	YATR	2 cut(s)	221, 381
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	219, 379
FblI	GTMKAC	2 cut(s)	111, 117
Fnu4HI	GCNGC	3 cut(s)	72, 159, 170
Fsp4HI	GCNGC	3 cut(s)	72, 159, 170
FspBI	CTAG	1 cut(s)	397
GluI	GCNGC	3 cut(s)	72, 159, 170
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	384
HgaI	GACGC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	223, 383
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	2 cut(s)	29, 47
Hpy166II	GTNNAC	3 cut(s)	79, 112, 118
Hpy188I	TCNGA	4 cut(s)	67, 106, 192, 217
Hpy188III	TCNNGA	3 cut(s)	227, 257, 263
Hpy8I	GTNNAC	3 cut(s)	79, 112, 118
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	2 cut(s)	278, 319
HpyCH4IV	ACGT	3 cut(s)	108, 114, 207
HpyCH4V	TGCA	2 cut(s)	161, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 381
HpyF3I	CTNAG	3 cut(s)	66, 132, 153
HpySE526I	ACGT	3 cut(s)	108, 114, 207
Hsp92II	CATG	2 cut(s)	223, 383
Kzo9I	GATC	5 cut(s)	178, 187, 223, 244, 259
LmnI	GCTCC	4 cut(s)	22, 177, 259, 268
LpnPI	CCDG	6 cut(s)	189, 212, 248, 270, 315, 335
Lsp1109I	GCAGC	3 cut(s)	58, 145, 156
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	397
MaeII	ACGT	3 cut(s)	108, 114, 207
MalI	GATC	5 cut(s)	180, 189, 225, 246, 261
MboI	GATC	5 cut(s)	178, 187, 223, 244, 259
MflI	RGATCY	4 cut(s)	178, 187, 223, 244
MlsI	TGGCCA	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	23, 41
MmeI	TCCRAC	2 cut(s)	129, 240
MnlI	CCTC	6 cut(s)	61, 95, 127, 139, 148, 259
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	158, 381
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	5 cut(s)	178, 187, 223, 244, 259
NlaIII	CATG	2 cut(s)	223, 383
NlaIV	GGNNCC	3 cut(s)	18, 246, 300
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 213
PkrI	GCNGC	3 cut(s)	73, 160, 171
PleI	GAGTC	2 cut(s)	23, 41
PpsI	GAGTC	2 cut(s)	23, 41
Ppu21I	YACGTR	1 cut(s)	208
PshAI	GACNNNNGTC	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	18, 246, 300
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	4 cut(s)	178, 187, 223, 244
RsaI	GTAC	2 cut(s)	206, 286
RsaNI	GTAC	2 cut(s)	205, 285
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	3 cut(s)	72, 159, 170
Sau3AI	GATC	5 cut(s)	178, 187, 223, 244, 259
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	23, 41
SetI	ASST	8 cut(s)	111, 117, 138, 154, 210, 256, 335, 398
SfaNI	GCATC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	298
SsiI	CCGC	4 cut(s)	54, 74, 94, 282
SspMI	CTAG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	2 cut(s)	278, 319
TaiI	ACGT	3 cut(s)	111, 117, 210
TaqI	TCGA	2 cut(s)	41, 87
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	3 cut(s)	71, 158, 169
TspDTI	ATGAA	1 cut(s)	355
TspGWI	ACGGA	3 cut(s)	135, 200, 306
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	111, 117
XspI	CTAG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.