AT5G38610

inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001702
Physical Location & Seq
Reverse (-)
15460691 .. 15461459
769 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38610.1

Sequence Viewer

Length: 600 bp
ATGAAGCTCTCTCAAGTCTTCTACATTATCTTCTTATTCTTCCTTGTCTCACAAGTAAAGTCAACGTCCGATATGATCGACCAAACCTGCAAATCTTGCGCAGCCAAATCCACGATCTTCGATTACAACTTCTGTGTCTCCTCTCTCAACAACTCTCCAATAGCTCTTCCTTCTCCGACCAATCTTTCTTCTCTTGCCCTTGTTCCAATGCTCCAAGCTCTCGACAACGCCACCGCAACAGCTTCCACCATTCAACAGCTTCTTATAAGCGACGACGACGGTAGTTTCCGCAGTGCTTGCCTCCGTGACTGCCTCGAGCTTTACGAGGACGCGACGGATAGATTGGAGGAGGCAGTGAGAGTTTTTATTACAAGGAAAGAGTTAGGTACGGTTAATGTGATGGTAAGCGCCGCCATGGAATCCGCCGTGACTTGTGAGAATGGATTCAGGGAAAGAGACGACGGTGACGGTGGTGGTGGAGGTGTGACGACGTGGACGTCTCCTATTGGTGATGAGAATCACAAATTGTTTGAGTTTGGTCAGATTGCTCTTTGTATATTCAATATGCTCTCTTCTTCTGTCACATCTCTATCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

199

Amino Acids

21.64

Weight (kDa)

4.38

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 25 - 186 1.7e-26 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
AasI GACNNNNNNGTC 1 cut(s) 496
AatII GACGTC 1 cut(s) 500
Acc16I TGCGCA 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 95
AccII CGCG 1 cut(s) 332
AciI CCGC 4 cut(s) 234, 289, 411, 423
AcyI GRCGYC 1 cut(s) 497
AfaI GTAC 1 cut(s) 388
AgsI TTSAA 2 cut(s) 254, 562
AjiI CACGTC 1 cut(s) 492
AluBI AGCT 6 cut(s) 7, 164, 218, 242, 259, 319
AluI AGCT 6 cut(s) 7, 164, 218, 242, 259, 319
Alw26I GTCTC 4 cut(s) 52, 142, 450, 504
Ama87I CYCGRG 1 cut(s) 314
ApeKI GCWGC 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 443
AspLEI GCGC 2 cut(s) 101, 410
AsuHPI GGTGA 2 cut(s) 476, 521
AvaI CYCGRG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 410
BcoDI GTCTC 4 cut(s) 52, 142, 450, 504
BfoI RGCGCY 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 95
BisI GCNGC 2 cut(s) 102, 411
BlsI GCNGC 2 cut(s) 103, 412
BmeT110I CYCGRG 1 cut(s) 314
BmgBI CACGTC 1 cut(s) 492
BpiI GAAGAC 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 516
BsaHI GRCGYC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 414
Bse8I GATNNNNATC 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 414
BseJI GATNNNNATC 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 130, 362
BseXI GCAGC 1 cut(s) 113
Bsh1236I CGCG 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 314
BsmAI GTCTC 4 cut(s) 52, 142, 450, 504
BsmBI CGTCTC 2 cut(s) 450, 504
BsoBI CYCGRG 1 cut(s) 314
Bsp143I GATC 2 cut(s) 75, 114
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 4 cut(s) 234, 289, 411, 423
BspFNI CGCG 1 cut(s) 332
BspMI ACCTGC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 2 cut(s) 75, 114
BssNI GRCGYC 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 414
Bst4CI ACNGT 4 cut(s) 281, 391, 464, 470
Bst6I CTCTTC 2 cut(s) 171, 577
BstACI GRCGYC 1 cut(s) 497
BstAPI GCANNNNNTGC 2 cut(s) 96, 297
BstC8I GCNNGC 1 cut(s) 298
BstDSI CCRYGG 1 cut(s) 414
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 2 cut(s) 101, 410
BstKTI GATC 2 cut(s) 78, 117
BstMAI GTCTC 4 cut(s) 52, 142, 450, 504
BstMBI GATC 2 cut(s) 75, 114
BstMWI GCNNNNNNNGC 2 cut(s) 96, 297
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 414
BtrI CACGTC 1 cut(s) 492
BtsI GCAGTG 2 cut(s) 298, 360
BtsIMutI CAGTG 2 cut(s) 298, 360
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 2 cut(s) 101, 410
CseI GACGC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 387
CviAII CATG 1 cut(s) 415
CviJI RGCY 7 cut(s) 7, 104, 164, 218, 242, 259, 319
CviKI_1 RGCY 7 cut(s) 7, 104, 164, 218, 242, 259, 319
CviQI GTAC 1 cut(s) 387
DpnI GATC 2 cut(s) 77, 116
DpnII GATC 2 cut(s) 75, 114
DrdI GACNNNNNNGTC 1 cut(s) 496
DseDI GACNNNNNNGTC 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 171, 577
EarI CTCTTC 2 cut(s) 171, 577
EciI GGCGGA 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 314
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 2 cut(s) 450, 504
FaeI CATG 1 cut(s) 418
FaiI YATR 5 cut(s) 74, 266, 416, 557, 566
FatI CATG 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 102, 411
Fsp4HI GCNGC 2 cut(s) 102, 411
FspI TGCGCA 1 cut(s) 100
GlaI GCGC 2 cut(s) 100, 409
GluI GCNGC 2 cut(s) 102, 411
HaeII RGCGCY 1 cut(s) 411
HgaI GACGC 1 cut(s) 338
HhaI GCGC 2 cut(s) 101, 410
Hin1I GRCGYC 1 cut(s) 497
Hin1II CATG 1 cut(s) 418
Hin6I GCGC 2 cut(s) 99, 408
HinP1I GCGC 2 cut(s) 99, 408
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 419, 444, 517
HphI GGTGA 2 cut(s) 476, 521
Hpy166II GTNNAC 2 cut(s) 63, 495
Hpy188I TCNGA 3 cut(s) 70, 177, 543
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 63, 495
Hpy99I CGWCG 6 cut(s) 275, 278, 281, 337, 464, 493
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 4 cut(s) 281, 391, 464, 470
HpyCH4IV ACGT 3 cut(s) 65, 491, 497
HpyCH4V TGCA 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 297
HpySE526I ACGT 3 cut(s) 65, 491, 497
Hsp92I GRCGYC 1 cut(s) 497
Hsp92II CATG 1 cut(s) 418
HspAI GCGC 2 cut(s) 99, 408
Kzo9I GATC 2 cut(s) 75, 114
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 2 cut(s) 100, 433
Lsp1109I GCAGC 1 cut(s) 113
MaeII ACGT 3 cut(s) 65, 491, 497
MaeIII GTNAC 5 cut(s) 305, 427, 464, 484, 580
MalI GATC 2 cut(s) 77, 116
MboI GATC 2 cut(s) 75, 114
MboII GAAGA 8 cut(s) 10, 22, 31, 109, 158, 180, 564, 567
MluCI AATT 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 7 cut(s) 151, 311, 319, 323, 340, 343, 473
MroXI GAANNNNTTC 1 cut(s) 443
MseI TTAA 1 cut(s) 393
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 96, 297
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 75, 114
NlaIII CATG 1 cut(s) 418
NmuCI GTSAC 5 cut(s) 305, 427, 464, 484, 580
NsbI TGCGCA 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 494
PdmI GAANNNNTTC 1 cut(s) 443
PfeI GAWTC 3 cut(s) 419, 444, 517
PkrI GCNGC 2 cut(s) 103, 412
PsiI TTATAA 1 cut(s) 266
PspXI VCTCGAGB 1 cut(s) 314
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 102, 411
Sau3AI GATC 2 cut(s) 75, 114
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 2 cut(s) 12, 314
SmoI CTYRAG 2 cut(s) 12, 314
Sse9I AATT 1 cut(s) 524
SsiI CCGC 4 cut(s) 234, 289, 411, 423
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 4 cut(s) 281, 391, 464, 470
TaiI ACGT 3 cut(s) 68, 494, 500
TaqI TCGA 4 cut(s) 78, 120, 222, 315
TasI AATT 1 cut(s) 524
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 3 cut(s) 419, 444, 517
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 298, 360
TseFI GTSAC 5 cut(s) 305, 427, 464, 484, 580
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 5 cut(s) 305, 427, 464, 484, 580
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 293, 350
TspRI CASTG 2 cut(s) 298, 360
XhoI CTCGAG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 443
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.