Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001702

Physical Location & Seq

Genomic Coordinates Reverse (-)

471754 .. 472278

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGAGATCTCTCAAATGGATCATTGCATGTCTCACTCTCTTTGTTCTAAGCCAATCTCGAGGATCAGTGAGTACAGATTTGGTAGAAGAGACGTGCCACAAAACCACCAATTACGACTTATGTGTGTCATCGTTAAAATCTGACCCTCGTAGTTCTACAGCTGATGTTAAAGGACTGGCTCGTATTGCGCTTGACCAAACGCTGACCAATTCTGTAGACACTCAAGCTCGAATTGCGAGGTTGTTTAATGAAACGAGTGATGAGTATATTCGGAAAGGTCTTGGGACTTGCAAGGATGAGTATGATTTGGGTGTTGGAAAGATTACAGAGGCCACTAAAAATGTGATATTGAGTCGCTTCGTGGACGCGAGGAATGATGTTGCAGATGTTGCTGATGAGGTAAACACTTGTGAAGAGTCATTTTCCAGAGGAGGACGATGGCGACAATCACCATTGACTGATAGGAATAATGTCATTGTTAGGTTTGCTAAATTCACTGGAGAGATAATCGCCATTCTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

175

Amino Acids

19.29

Weight (kDa)

5.9

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38610
fragaria_vesca	FvH4_5g19730 FvH4_5g20950 FvH4_7g08770
malus_domestica	MD02G1225200.v1.1 MD06G1041900.v1.1 MD07G1088700.v1.1
prunus_persica	Prupe.2G115600_v2.0.a1 Prupe.3G007700_v2.0.a1 Prupe.3G007800_v2.0.a1 Prupe.3G007900_v2.0.a1 Prupe.3G008000_v2.0.a1 Prupe.5G048600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0344001 RchiOBHm_Chr1g0344031 RchiOBHm_Chr1g0344051 RchiOBHm_Chr7g0208011
rosa_laevigata	RLG00000003263 RLG00000022936 RLG00000028929 RLG00000028933
rosa_multiflora	Rmu_sc0002039.1_g000005 Rmu_sc0011232.1_g000001 Rmu_ssc0000434.1_g000011
rosa_roxburghii	Rroxscaffold_3G00250900 Rroxscaffold_4G00310090 Rroxscaffold_4G00310110
rosa_rugosa	Rorug01G0170900 Rorug01G0171300 Rorug07G0100900
rosa_samantha	Rh1AG187800 Rh1AG188000 Rh1BG153900 Rh1BG154100 Rh1CG173300 Rh1CG173400 Rh1DG186000 Rh1DG186200 Rh7AG235200 Rh7BG230300 Rh7CG249900 Rh7DG240900
rosa_wichuraiana	Rw0G014110 Rw0G014130 Rw0G020330 Rw1G015440 Rw1G015450 Rw1G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	368
AclWI	GGATC	2 cut(s)	26, 70
AcsI	RAATTY	1 cut(s)	491
AfaI	GTAC	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	93
AluBI	AGCT	2 cut(s)	161, 227
AluI	AGCT	2 cut(s)	161, 227
Alw26I	GTCTC	2 cut(s)	35, 83
AlwI	GGATC	2 cut(s)	26, 70
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	57
BccI	CCATC	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	35, 83
BfmI	CTRYAG	2 cut(s)	156, 213
BglII	AGATCT	1 cut(s)	5
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	207
Bse1I	ACTGG	2 cut(s)	180, 502
Bse3DI	GCAATG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	180, 502
BseRI	GAGGAG	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	35, 83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	5, 18, 62
BspANI	GGCC	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	368
BspPI	GGATC	2 cut(s)	26, 70
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	2 cut(s)	180, 502
BssMI	GATC	3 cut(s)	5, 18, 62
Bst6I	CTCTTC	2 cut(s)	81, 408
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	8, 21, 65
BstMAI	GTCTC	2 cut(s)	35, 83
BstMBI	GATC	3 cut(s)	5, 18, 62
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 233, 389
BstNSI	RCATGY	1 cut(s)	30
BstSFI	CTRYAG	2 cut(s)	156, 213
BstUI	CGCG	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	332
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	72, 495
CfoI	GCGC	1 cut(s)	190
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	5 cut(s)	51, 161, 179, 227, 332
CviKI_1	RGCY	5 cut(s)	51, 161, 179, 227, 332
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	3 cut(s)	7, 20, 64
DpnII	GATC	3 cut(s)	5, 18, 62
Eam1104I	CTCTTC	2 cut(s)	81, 408
EarI	CTCTTC	2 cut(s)	81, 408
Eco88I	CYCGRG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	30
FaiI	YATR	4 cut(s)	28, 121, 267, 303
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	216
FokI	GGATG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	332
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	352, 416
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	217, 364, 403
Hpy188I	TCNGA	2 cut(s)	142, 273
Hpy188III	TCNNGA	2 cut(s)	57, 426
Hpy8I	GTNNAC	3 cut(s)	217, 364, 403
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	26, 291, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 233, 389
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	5, 18, 62
LpnPI	CCDG	3 cut(s)	161, 439, 483
MaeII	ACGT	1 cut(s)	92
MalI	GATC	3 cut(s)	7, 20, 64
MboI	GATC	3 cut(s)	5, 18, 62
MboII	GAAGA	2 cut(s)	98, 425
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	4 cut(s)	109, 208, 231, 491
MlyI	GAGTC	2 cut(s)	361, 425
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	53, 156, 231, 322, 363, 391, 422, 425
MseI	TTAA	4 cut(s)	134, 168, 246, 523
MspA1I	CMGCKG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	368
MwoI	GCNNNNNNNGC	3 cut(s)	185, 233, 389
NdeII	GATC	3 cut(s)	5, 18, 62
NlaIII	CATG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	57
PleI	GAGTC	2 cut(s)	360, 424
PpsI	GAGTC	2 cut(s)	360, 424
PsuI	RGATCY	1 cut(s)	5
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SaqAI	TTAA	4 cut(s)	134, 168, 246, 523
Sau3AI	GATC	3 cut(s)	5, 18, 62
SchI	GAGTC	2 cut(s)	361, 425
SetI	ASST	7 cut(s)	95, 163, 229, 242, 280, 402, 485
SfcI	CTRYAG	2 cut(s)	156, 213
Sfr274I	CTCGAG	1 cut(s)	57
SlaI	CTCGAG	1 cut(s)	57
SmlI	CTYRAG	2 cut(s)	57, 222
SmoI	CTYRAG	2 cut(s)	57, 222
Sse9I	AATT	4 cut(s)	109, 208, 231, 491
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	58, 229
TasI	AATT	4 cut(s)	109, 208, 231, 491
TatI	WGTACW	1 cut(s)	71
Tru1I	TTAA	4 cut(s)	134, 168, 246, 523
Tru9I	TTAA	4 cut(s)	134, 168, 246, 523
TscAI	CASTG	2 cut(s)	72, 502
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	72, 502
XapI	RAATTY	1 cut(s)	491
XceI	RCATGY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.