Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001702

Physical Location & Seq

Genomic Coordinates Reverse (-)

17346686 .. 17347455

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGAACTTCCACATTCTCTCTCACATCCCTCCCTCTCTTCCTCTTCTTCTTCTTCTTCTTCACCTTGAAAGCCATAACTGCCAAAAACCTCATCCCTGACACCTGCAAAAAATGTGTTCAAGATGATCCAAACCTAAGCTACAAATTCTGCGTAACTTCTCTCCAAGCCGCCCCGAATAGCAGCAGCGCCGATGTTCGCCAACTTGGCATAATCTCCATGAACTTAATCCGCCAAAACATGACCAGCACAAGGCAATACATCAAACAACTTATGAAGAACAGGAAACTGGATAAATTCTTAAGGGCCTATTTGGAAGTCTGCTTGGAGCTTTATTCAGACGCCATACCAGACATCAAGCAAGCTCTCAGATATTACAAGGCTAAGCAGTATCGAGATGCCAATGTACGAGTGACTGGAGTGTATGATGCCCCTGTAACTTGTGAAGATGGTTTCCATGAAAGAAAAGGGTTGGTTTCGCCATTGACGAAGAGAAACAACGATGCTGTTCAGCTTTCTGCCATAGCTCTTTCTATTATCGACATGCTTGGTTCATTAGGATTTAAATTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

192

Amino Acids

21.72

Weight (kDa)

9.47

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38610
fragaria_vesca	FvH4_5g19730 FvH4_5g20950 FvH4_7g08770
malus_domestica	MD02G1225200.v1.1 MD06G1041900.v1.1 MD07G1088700.v1.1
prunus_persica	Prupe.2G115600_v2.0.a1 Prupe.3G007700_v2.0.a1 Prupe.3G007800_v2.0.a1 Prupe.3G007900_v2.0.a1 Prupe.3G008000_v2.0.a1 Prupe.5G048600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0344001 RchiOBHm_Chr1g0344031 RchiOBHm_Chr1g0344051 RchiOBHm_Chr7g0208011
rosa_laevigata	RLG00000003263 RLG00000022936 RLG00000028929 RLG00000028933
rosa_multiflora	Rmu_sc0002039.1_g000005 Rmu_sc0011232.1_g000001 Rmu_ssc0000434.1_g000011
rosa_roxburghii	Rroxscaffold_3G00250900 Rroxscaffold_4G00310090 Rroxscaffold_4G00310110
rosa_rugosa	Rorug01G0170900 Rorug01G0171300 Rorug07G0100900
rosa_samantha	Rh1AG187800 Rh1AG188000 Rh1BG153900 Rh1BG154100 Rh1CG173300 Rh1CG173400 Rh1DG186000 Rh1DG186200 Rh7AG235200 Rh7BG230300 Rh7CG249900 Rh7DG240900
rosa_wichuraiana	Rw0G014110 Rw0G014130 Rw0G020330 Rw1G015440 Rw1G015450 Rw1G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	113
AciI	CCGC	2 cut(s)	171, 232
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	146, 296
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflII	CTTAAG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	70, 122
AluBI	AGCT	5 cut(s)	141, 331, 365, 514, 527
AluI	AGCT	5 cut(s)	141, 331, 365, 514, 527
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	183, 186
ApoI	RAATTY	2 cut(s)	146, 296
AseI	ATTAAT	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	55
BbvI	GCAGC	2 cut(s)	195, 198
BccI	CCATC	1 cut(s)	443
BfoI	RGCGCY	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	3 cut(s)	171, 184, 187
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	3 cut(s)	172, 185, 188
BmgT120I	GGNCC	1 cut(s)	306
BmsI	GCATC	3 cut(s)	388, 418, 493
BpmI	CTGGAG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	294, 421
BseGI	GGATG	2 cut(s)	26, 93
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	382
BseNI	ACTGG	2 cut(s)	294, 421
BseXI	GCAGC	2 cut(s)	195, 198
BshFI	GGCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	252
BsnI	GGCC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	127
Bsp1720I	GCTNAGC	1 cut(s)	384
BspACI	CCGC	2 cut(s)	171, 232
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	381
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	294, 421
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	342
Bst6I	CTCTTC	3 cut(s)	44, 50, 485
BstACI	GRCGYC	1 cut(s)	342
BstAFI	CTTAAG	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	137, 368, 384
BstF5I	GGATG	2 cut(s)	26, 93
BstH2I	RGCGCY	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 207
BstNSI	RCATGY	1 cut(s)	547
BstV1I	GCAGC	2 cut(s)	195, 198
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	26, 93
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	306
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	4 cut(s)	220, 241, 458, 544
CviJI	RGCY	9 cut(s)	74, 141, 170, 308, 331, 365, 383, 514, 527
CviKI_1	RGCY	9 cut(s)	74, 141, 170, 308, 331, 365, 383, 514, 527
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	3 cut(s)	137, 368, 384
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DraI	TTTAAA	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	44, 50, 485
EarI	CTCTTC	3 cut(s)	44, 50, 485
EciI	GGCGGA	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	306
FaeI	CATG	4 cut(s)	223, 244, 461, 547
FatI	CATG	4 cut(s)	219, 240, 457, 543
Fnu4HI	GCNGC	3 cut(s)	171, 184, 187
FokI	GGATG	2 cut(s)	13, 80
Fsp4HI	GCNGC	3 cut(s)	171, 184, 187
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	171, 184, 187
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	308
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	223, 244, 461, 547
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	340, 371
Hpy188III	TCNNGA	2 cut(s)	122, 395
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 207
HpyF3I	CTNAG	3 cut(s)	137, 368, 384
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	223, 244, 461, 547
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	111, 118, 259, 268, 275, 363, 402, 447
Lsp1109I	GCAGC	2 cut(s)	195, 198
LweI	GCATC	3 cut(s)	388, 418, 493
MaeIII	GTNAC	3 cut(s)	154, 412, 436
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MluCI	AATT	3 cut(s)	146, 296, 566
MnlI	CCTC	4 cut(s)	41, 45, 53, 101
MseI	TTAA	4 cut(s)	227, 302, 564, 569
MspCI	CTTAAG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	80, 207
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	223, 244, 461, 547
NmuCI	GTSAC	1 cut(s)	412
NspI	RCATGY	1 cut(s)	547
PaqCI	CACCTGC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	172, 185, 188
PshBI	ATTAAT	1 cut(s)	569
PspPI	GGNCC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	227, 302, 564, 569
SatI	GCNGC	3 cut(s)	171, 184, 187
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	306
SetI	ASST	9 cut(s)	68, 93, 107, 138, 143, 333, 367, 516, 529
SfaNI	GCATC	3 cut(s)	388, 418, 493
SmiI	ATTTAAAT	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	3 cut(s)	146, 296, 566
SsiI	CCGC	2 cut(s)	171, 232
SwaI	ATTTAAAT	1 cut(s)	565
TaqI	TCGA	2 cut(s)	394, 540
TasI	AATT	3 cut(s)	146, 296, 566
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	227, 302, 564, 569
Tru9I	TTAA	4 cut(s)	227, 302, 564, 569
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	183, 186
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	236, 290, 474, 543
Vha464I	CTTAAG	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	569
XapI	RAATTY	2 cut(s)	146, 296
XceI	RCATGY	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.