Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002039.1

Orthogroup ID

OG0001702

Physical Location & Seq

Genomic Coordinates Forward (+)

23960 .. 25551

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002039.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgagtgatgatttcatcgaacaatcttgcaagatagctgctggtcgtgaaccatctttgaactacaccttctgtgtctcaactcttaaggccagccctaaaagccatggtgcagaccttgatggactcatgtgcatcgtacttcgccaagccatagacaaggtggcctacatcaatgacctcatccaaaaaaaatgtgccgatgaatcccacgtctttagctacgacctatgcacaacctctcttcaagcagttccagtcagccatgtggctaatctccaaggactagcattgatagcaatggagctagcactaaacaatgcaagcagcacgcttcagatcataaaaaatttgttgatgagcaacgaaagtctagatccttttgttgtggtttgcttgaaggactgcttgcagctctattcagacgggatcacaacactggaggatgctgaaggagcatttctgggtgagcattatgacaacgccaatatttgtcttagtgcagttatggaagcatcgagtacatgtgaggaaggctttaaggagaaggaaggtgaagtattaccgtctccattgacaaatgagaattacaatctttttcaattatgtgatattgcactgtgcataggccacttgcttacctcgggttctaccttgttgatgaggtcctctgcaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

226

Amino Acids

24.46

Weight (kDa)

4.48

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38610
fragaria_vesca	FvH4_5g19730 FvH4_5g20950 FvH4_7g08770
malus_domestica	MD02G1225200.v1.1 MD06G1041900.v1.1 MD07G1088700.v1.1
prunus_persica	Prupe.2G115600_v2.0.a1 Prupe.3G007700_v2.0.a1 Prupe.3G007800_v2.0.a1 Prupe.3G007900_v2.0.a1 Prupe.3G008000_v2.0.a1 Prupe.5G048600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0344001 RchiOBHm_Chr1g0344031 RchiOBHm_Chr1g0344051 RchiOBHm_Chr7g0208011
rosa_laevigata	RLG00000003263 RLG00000022936 RLG00000028929 RLG00000028933
rosa_multiflora	Rmu_sc0002039.1_g000005 Rmu_sc0011232.1_g000001 Rmu_ssc0000434.1_g000011
rosa_roxburghii	Rroxscaffold_3G00250900 Rroxscaffold_4G00310090 Rroxscaffold_4G00310110
rosa_rugosa	Rorug01G0170900 Rorug01G0171300 Rorug07G0100900
rosa_samantha	Rh1AG187800 Rh1AG188000 Rh1BG153900 Rh1BG154100 Rh1CG173300 Rh1CG173400 Rh1DG186000 Rh1DG186200 Rh7AG235200 Rh7BG230300 Rh7CG249900 Rh7DG240900
rosa_wichuraiana	Rw0G014110 Rw0G014130 Rw0G020330 Rw1G015440 Rw1G015450 Rw1G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	371, 437
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	320, 471
AfaI	GTAC	2 cut(s)	141, 523
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	4 cut(s)	61, 248, 400, 602
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	4 cut(s)	38, 222, 307, 415
AluI	AGCT	4 cut(s)	38, 222, 307, 415
Alw26I	GTCTC	2 cut(s)	82, 573
AlwI	GGATC	2 cut(s)	371, 437
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	3 cut(s)	90, 165, 628
ApeKI	GCWGC	3 cut(s)	38, 327, 412
ApoI	RAATTY	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	666
AsuHPI	GGTGA	2 cut(s)	479, 566
AsuNHI	GCTAGC	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	666
BbvI	GCAGC	3 cut(s)	25, 339, 424
BccI	CCATC	2 cut(s)	61, 116
BcoDI	GTCTC	2 cut(s)	82, 573
BfaI	CTAG	3 cut(s)	287, 308, 374
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	3 cut(s)	39, 328, 413
BlsI	GCNGC	3 cut(s)	40, 329, 414
Bme18I	GGWCC	1 cut(s)	666
BmeT110I	CYCGRG	1 cut(s)	643
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	666
BmsI	GCATC	3 cut(s)	144, 436, 524
BmtI	GCTAGC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	106, 280, 642
Bse1I	ACTGG	2 cut(s)	257, 444
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	3 cut(s)	106, 280, 642
BseGI	GGATG	2 cut(s)	183, 451
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	257, 444
BseXI	GCAGC	3 cut(s)	25, 339, 424
BsgI	GTGCAG	2 cut(s)	132, 522
BshFI	GGCC	3 cut(s)	92, 167, 630
BsiHKCI	CYCGRG	1 cut(s)	643
BsmAI	GTCTC	2 cut(s)	82, 573
BsmBI	CGTCTC	1 cut(s)	573
BsnI	GGCC	3 cut(s)	92, 167, 630
BsoBI	CYCGRG	1 cut(s)	643
Bsp143I	GATC	3 cut(s)	339, 376, 429
Bsp19I	CCATGG	1 cut(s)	106
BspANI	GGCC	3 cut(s)	92, 167, 630
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	371, 437
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	2 cut(s)	257, 444
BssECI	CCNNGG	3 cut(s)	106, 280, 642
BssMI	GATC	3 cut(s)	339, 376, 429
BssT1I	CCWWGG	2 cut(s)	106, 280
Bst4CI	ACNGT	2 cut(s)	567, 621
Bst6I	CTCTTC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	5 cut(s)	94, 309, 325, 332, 410
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	183, 451
BstKTI	GATC	3 cut(s)	342, 379, 432
BstMAI	GTCTC	2 cut(s)	82, 573
BstMBI	GATC	3 cut(s)	339, 376, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 296, 455
BstNSI	RCATGY	1 cut(s)	528
BstV1I	GCAGC	3 cut(s)	25, 339, 424
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	3 cut(s)	92, 167, 630
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	183, 451
BtsIMutI	CAGTG	2 cut(s)	437, 617
Cac8I	GCNNGC	5 cut(s)	94, 309, 325, 332, 410
Cfr13I	GGNCC	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	140, 522
CviAII	CATG	4 cut(s)	107, 130, 266, 525
CviQI	GTAC	2 cut(s)	140, 522
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	3 cut(s)	341, 378, 431
DpnII	GATC	3 cut(s)	339, 376, 429
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	106, 280
Eco47I	GGWCC	1 cut(s)	666
Eco57I	CTGAAG	2 cut(s)	320, 471
Eco88I	CYCGRG	1 cut(s)	643
EcoO109I	RGGNCCY	1 cut(s)	666
EcoT14I	CCWWGG	2 cut(s)	106, 280
ErhI	CCWWGG	2 cut(s)	106, 280
Esp3I	CGTCTC	1 cut(s)	573
FaeI	CATG	4 cut(s)	110, 133, 269, 528
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FatI	CATG	4 cut(s)	106, 129, 265, 524
Fnu4HI	GCNGC	3 cut(s)	39, 328, 413
FokI	GGATG	2 cut(s)	170, 458
Fsp4HI	GCNGC	3 cut(s)	39, 328, 413
FspBI	CTAG	3 cut(s)	287, 308, 374
GluI	GCNGC	3 cut(s)	39, 328, 413
GsuI	CTGGAG	1 cut(s)	461
HaeIII	GGCC	3 cut(s)	92, 167, 630
Hin1II	CATG	4 cut(s)	110, 133, 269, 528
HinfI	GANTC	2 cut(s)	126, 206
HphI	GGTGA	2 cut(s)	479, 566
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	339, 424
Hpy188III	TCNNGA	2 cut(s)	47, 374
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	79, 394, 446, 527, 541, 545
HpyCH4III	ACNGT	2 cut(s)	567, 621
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 296, 455
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	110, 133, 269, 528
Kzo9I	GATC	3 cut(s)	339, 376, 429
LmnI	GCTCC	2 cut(s)	304, 455
LpnPI	CCDG	5 cut(s)	27, 106, 270, 425, 449
Lsp1109I	GCAGC	3 cut(s)	25, 339, 424
LweI	GCATC	3 cut(s)	144, 436, 524
MaeI	CTAG	3 cut(s)	287, 308, 374
MaeII	ACGT	1 cut(s)	213
MalI	GATC	3 cut(s)	341, 378, 431
MboI	GATC	3 cut(s)	339, 376, 429
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	3 cut(s)	349, 586, 602
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	7 cut(s)	191, 250, 436, 523, 652, 657, 679
MseI	TTAA	3 cut(s)	87, 540, 679
MspCI	CTTAAG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	102, 296, 455
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	339, 376, 429
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	4 cut(s)	110, 133, 269, 528
NspI	RCATGY	1 cut(s)	528
PciI	ACATGT	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	40, 329, 414
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PpuMI	RGGWCCY	1 cut(s)	666
PscI	ACATGT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	666
PspPI	GGNCC	1 cut(s)	666
PspPPI	RGGWCCY	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	141, 523
RsaNI	GTAC	2 cut(s)	140, 522
SaqAI	TTAA	3 cut(s)	87, 540, 679
SatI	GCNGC	3 cut(s)	39, 328, 413
Sau3AI	GATC	3 cut(s)	339, 376, 429
Sau96I	GGNCC	1 cut(s)	666
SchI	GAGTC	1 cut(s)	120
SfaNI	GCATC	3 cut(s)	144, 436, 524
SinI	GGWCC	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	3 cut(s)	349, 586, 602
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	3 cut(s)	287, 308, 374
StyI	CCWWGG	2 cut(s)	106, 280
TaaI	ACNGT	2 cut(s)	567, 621
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	18, 518
TasI	AATT	3 cut(s)	349, 586, 602
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	3 cut(s)	87, 540, 679
Tru9I	TTAA	3 cut(s)	87, 540, 679
TscAI	CASTG	2 cut(s)	444, 624
TseI	GCWGC	3 cut(s)	38, 327, 412
TspDTI	ATGAA	2 cut(s)	4, 219
TspRI	CASTG	2 cut(s)	444, 624
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	666
XapI	RAATTY	1 cut(s)	349
XbaI	TCTAGA	1 cut(s)	373
XceI	RCATGY	1 cut(s)	528
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XspI	CTAG	3 cut(s)	287, 308, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.