Rmu_sc0011232.1_g000001

invertase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011232.1
OG0001702
Physical Location & Seq
Forward (+)
1 .. 448
448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011232.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
aatcttctaaagaacgaggagcttgacaagttcgtaaggatgtgtttggatgactatttggacctttacacagacgccataactagcatcaagcaagccgtcaaggattacaaaatgaaggacaacagacacgccaatctcgcagtgagttcggtcgccggtgccgccacgacttgcgaagatggattcgaagagacaccagggttggtttcgccattaacaaagaggaacaacgagaggtctcagctgtgtgatatagcgcttatgattatcaatatggtcagttcgtcgttttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

99

Amino Acids

11.11

Weight (kDa)

4.83

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 161
AciI CCGC 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 75
AfeI AGCGCT 1 cut(s) 261
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 2 cut(s) 22, 247
AluI AGCT 2 cut(s) 22, 247
Alw26I GTCTC 2 cut(s) 188, 246
Aor51HI AGCGCT 1 cut(s) 261
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 161
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 188, 246
BfaI CTAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 263
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 158
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 45, 55
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 32
Bsh1285I CGRYCG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 188, 246
Bso31I GGTCTC 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 189
BspACI CCGC 1 cut(s) 165
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 163
BspT104I TTCGAA 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 246
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 200
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 75
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 45, 55
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstMAI GTCTC 2 cut(s) 188, 246
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 140, 164
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 45, 55
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 83
CviJI RGCY 3 cut(s) 22, 98, 247
CviKI_1 RGCY 3 cut(s) 22, 98, 247
DdeI CTNAG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 61
Eco47III AGCGCT 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 199
FaiI YATR 4 cut(s) 80, 257, 266, 278
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 52, 62
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 263
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 75
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 186
HpaII CCGG 1 cut(s) 159
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 164
HpyF3I CTNAG 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 75
HspAI GCGC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 172, 186, 213
LweI GCATC 1 cut(s) 96
MaeI CTAG 1 cut(s) 84
MboII GAAGA 2 cut(s) 191, 203
MnlI CCTC 3 cut(s) 10, 219, 231
MseI TTAA 2 cut(s) 218, 298
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 140, 164
NlaIV GGNNCC 1 cut(s) 163
NspV TTCGAA 1 cut(s) 189
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 61
PvuII CAGCTG 1 cut(s) 247
SaqAI TTAA 2 cut(s) 218, 298
SatI GCNGC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 201
SetI ASST 4 cut(s) 24, 66, 242, 249
SfaNI GCATC 1 cut(s) 96
SfuI TTCGAA 1 cut(s) 189
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 1 cut(s) 61
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 199
TaqI TCGA 1 cut(s) 189
TaqII GACCGA 1 cut(s) 142
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 2 cut(s) 218, 298
Tru9I TTAA 2 cut(s) 218, 298
TscAI CASTG 1 cut(s) 150
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 61
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.