Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001702

Physical Location & Seq

Genomic Coordinates Reverse (-)

8592499 .. 8594048

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAATCCAAAATCAGATCCTGATGATGGTGCGGGCGTCAATCCGGTCAGATCTGGGTTGGCTGGTTTGGCTTGTGAGTTTGGACACAACGCCTTGCTGTGGGTTGAGGATGGTCAGGGTGTCTTGAAGGCTGGTAGCTTTACCTATGGTGGTGGCTTCGATGGTGGTGAGGGCACTGTGGGGATGATCGACGGTCGCGTTGCGGTGATCATTGGTAACGCGGCAACTTGTCCTCATCCCCACAATATGACAATTGCAACCTCCATATTCACTTTCACGTTCCTCCCTCTCTTCCTCCTATTGTCATCAACCTTCACTCCTATAACTGCCAACAATCTCATCTCTGAAACCTGCAAGAAAGCTGCTCAGAATGACCCCAACCTGAGCTACAAGTTCTGCCTGACTTCTCTCCAAGCCGCCCCAAACAGCCCCGGTGCCGATCTCCGGCAACTCGGCCTCATCTCAATGAAGCTAGTCCAGCACAACGTAACCAACACAAGCCGCTACATCAAGCACCTTCTCAAGAACAAGCAGCTGGACAAGTTCGTAAGGGCGAGTTTGTATGACTGTTTGGATCTTTACACAGACGCCAGACCCACCATCAAGCAAGCCATCAAGAATTACAAGATGAAGCACAACGAAGACGCCAATATCCTGGTAAGTTCGATCGTCGATGCCTCCACGACTTGCGAAGATGGATTCGAGGAGAGACACTTGGTTTCCCCATTAACGAAGAGGAACAATGAGACGTTTCAGCTGTGTATTATAGCACTTTCGATTATCAATATGGTCAGTTCGTCGTTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

270

Amino Acids

29.19

Weight (kDa)

6.64

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	112 - 260	8.7e-26	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38610
fragaria_vesca	FvH4_5g19730 FvH4_5g20950 FvH4_7g08770
malus_domestica	MD02G1225200.v1.1 MD06G1041900.v1.1 MD07G1088700.v1.1
prunus_persica	Prupe.2G115600_v2.0.a1 Prupe.3G007700_v2.0.a1 Prupe.3G007800_v2.0.a1 Prupe.3G007900_v2.0.a1 Prupe.3G008000_v2.0.a1 Prupe.5G048600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0344001 RchiOBHm_Chr1g0344031 RchiOBHm_Chr1g0344051 RchiOBHm_Chr7g0208011
rosa_laevigata	RLG00000003263 RLG00000022936 RLG00000028929 RLG00000028933
rosa_multiflora	Rmu_sc0002039.1_g000005 Rmu_sc0011232.1_g000001 Rmu_ssc0000434.1_g000011
rosa_roxburghii	Rroxscaffold_3G00250900 Rroxscaffold_4G00310090 Rroxscaffold_4G00310110
rosa_rugosa	Rorug01G0170900 Rorug01G0171300 Rorug07G0100900
rosa_samantha	Rh1AG187800 Rh1AG188000 Rh1BG153900 Rh1BG154100 Rh1CG173300 Rh1CG173400 Rh1DG186000 Rh1DG186200 Rh7AG235200 Rh7BG230300 Rh7CG249900 Rh7DG240900
rosa_wichuraiana	Rw0G014110 Rw0G014130 Rw0G020330 Rw1G015440 Rw1G015450 Rw1G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	434
AccII	CGCG	2 cut(s)	198, 221
AciI	CCGC	5 cut(s)	32, 203, 221, 417, 502
AclWI	GGATC	2 cut(s)	11, 582
AcyI	GRCGYC	3 cut(s)	36, 588, 645
AfiI	CCNNNNNNNGG	3 cut(s)	26, 99, 444
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	6 cut(s)	138, 362, 387, 472, 535, 757
AluI	AGCT	6 cut(s)	138, 362, 387, 472, 535, 757
Alw26I	GTCTC	2 cut(s)	703, 740
AlwI	GGATC	2 cut(s)	11, 582
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	362, 532
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	179, 217
BaeGI	GKGCMC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	349, 544
BccI	CCATC	6 cut(s)	20, 104, 155, 608, 620, 689
BciT130I	CCWGG	1 cut(s)	656
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	703, 740
BfaI	CTAG	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	5 cut(s)	222, 363, 417, 502, 533
BlsI	GCNGC	5 cut(s)	223, 364, 418, 503, 534
Bme1390I	CCNGG	2 cut(s)	432, 656
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	432, 656
BmsI	GCATC	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	432
BsaHI	GRCGYC	3 cut(s)	36, 588, 645
BsaJI	CCNNGG	1 cut(s)	430
BsaWI	WCCGGW	1 cut(s)	43
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 99, 444
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	430
BseGI	GGATG	3 cut(s)	115, 189, 235
BseLI	CCNNNNNNNGG	3 cut(s)	26, 99, 444
BseMII	CTCAG	2 cut(s)	374, 380
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	349, 544
Bsh1236I	CGCG	2 cut(s)	198, 221
Bsh1285I	CGRYCG	2 cut(s)	196, 669
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	2 cut(s)	196, 669
BsiSI	CCGG	3 cut(s)	44, 432, 445
BslI	CCNNNNNNNGG	3 cut(s)	26, 99, 444
BsmAI	GTCTC	2 cut(s)	703, 740
BsmBI	CGTCTC	1 cut(s)	740
BsnI	GGCC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
BspACI	CCGC	5 cut(s)	32, 203, 221, 417, 502
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	2 cut(s)	375, 379
BspFNI	CGCG	2 cut(s)	198, 221
BspLI	GGNNCC	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	11, 582
BspT107I	GGYRCC	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	430
BssMI	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
BssNI	GRCGYC	3 cut(s)	36, 588, 645
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	3 cut(s)	178, 194, 569
Bst6I	CTCTTC	2 cut(s)	296, 728
BstACI	GRCGYC	3 cut(s)	36, 588, 645
BstC8I	GCNNGC	2 cut(s)	34, 609
BstDEI	CTNAG	2 cut(s)	366, 383
BstF5I	GGATG	3 cut(s)	115, 189, 235
BstFNI	CGCG	2 cut(s)	198, 221
BstKTI	GATC	7 cut(s)	19, 53, 189, 210, 442, 577, 669
BstMAI	GTCTC	2 cut(s)	703, 740
BstMBI	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
BstMCI	CGRYCG	2 cut(s)	196, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 478
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	2 cut(s)	430, 654
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	2 cut(s)	198, 221
BstV1I	GCAGC	2 cut(s)	349, 544
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	3 cut(s)	16, 50, 574
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	3 cut(s)	16, 50, 574
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	115, 189, 235
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	2 cut(s)	34, 609
CaiI	CAGNNNCTG	1 cut(s)	20
CseI	GACGC	3 cut(s)	25, 596, 653
DdeI	CTNAG	2 cut(s)	366, 383
DpnI	GATC	7 cut(s)	18, 52, 188, 209, 441, 576, 668
DpnII	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
Eam1104I	CTCTTC	2 cut(s)	296, 728
EarI	CTCTTC	2 cut(s)	296, 728
EcoRII	CCWGG	1 cut(s)	654
Esp3I	CGTCTC	1 cut(s)	740
FaiI	YATR	8 cut(s)	147, 248, 266, 323, 564, 767, 788, 805
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	222, 363, 417, 502, 533
FokI	GGATG	3 cut(s)	122, 196, 222
Fsp4HI	GCNGC	5 cut(s)	222, 363, 417, 502, 533
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	5 cut(s)	222, 363, 417, 502, 533
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	3 cut(s)	44, 432, 445
HgaI	GACGC	3 cut(s)	25, 596, 653
Hin1I	GRCGYC	3 cut(s)	36, 588, 645
HinfI	GANTC	2 cut(s)	4, 699
HpaII	CCGG	3 cut(s)	44, 432, 445
HphI	GGTGA	2 cut(s)	179, 217
Hpy188I	TCNGA	4 cut(s)	16, 50, 346, 369
Hpy188III	TCNNGA	4 cut(s)	20, 124, 523, 616
Hpy99I	CGWCG	3 cut(s)	194, 674, 802
HpyAV	CCTTC	3 cut(s)	121, 322, 527
HpyCH4III	ACNGT	3 cut(s)	178, 194, 569
HpyCH4IV	ACGT	3 cut(s)	278, 486, 749
HpyCH4V	TGCA	2 cut(s)	257, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 478
HpyF3I	CTNAG	2 cut(s)	366, 383
HpySE526I	ACGT	3 cut(s)	278, 486, 749
Hsp92I	GRCGYC	3 cut(s)	36, 588, 645
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
Lsp1109I	GCAGC	2 cut(s)	349, 544
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	3 cut(s)	278, 486, 749
MaeIII	GTNAC	2 cut(s)	215, 487
MalI	GATC	7 cut(s)	18, 52, 188, 209, 441, 576, 668
MboI	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
MboII	GAAGA	4 cut(s)	283, 653, 704, 745
MfeI	CAATTG	1 cut(s)	252
MflI	RGATCY	3 cut(s)	16, 50, 574
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	2 cut(s)	252, 619
MseI	TTAA	2 cut(s)	728, 808
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	2 cut(s)	535, 757
MspI	CCGG	3 cut(s)	44, 432, 445
MspR9I	CCNGG	2 cut(s)	432, 656
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	656
MvnI	CGCG	2 cut(s)	198, 221
MwoI	GCNNNNNNNGC	2 cut(s)	68, 478
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	4, 699
PkrI	GCNGC	5 cut(s)	223, 364, 418, 503, 534
Ple19I	CGATCG	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	3 cut(s)	16, 50, 574
PvuI	CGATCG	1 cut(s)	669
PvuII	CAGCTG	2 cut(s)	535, 757
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	728, 808
SatI	GCNGC	5 cut(s)	222, 363, 417, 502, 533
Sau3AI	GATC	7 cut(s)	16, 50, 186, 207, 439, 574, 666
ScrFI	CCNGG	2 cut(s)	432, 656
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	664
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	252, 619
SsiI	CCGC	5 cut(s)	32, 203, 221, 417, 502
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	430, 654
TaaI	ACNGT	3 cut(s)	178, 194, 569
TaiI	ACGT	3 cut(s)	281, 489, 752
TaqI	TCGA	6 cut(s)	159, 189, 665, 672, 702, 776
TasI	AATT	2 cut(s)	252, 619
TauI	GCSGC	3 cut(s)	224, 419, 504
TfiI	GAWTC	2 cut(s)	4, 699
Tru1I	TTAA	2 cut(s)	728, 808
Tru9I	TTAA	2 cut(s)	728, 808
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	2 cut(s)	362, 532
TspDTI	ATGAA	3 cut(s)	17, 482, 644
TspRI	CASTG	1 cut(s)	181
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.