MD07G1088700.v1.1

invertase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001702
Physical Location & Seq
Reverse (-)
9261438 .. 9261995
558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1088700.v1.1.491

Sequence Viewer

Length: 558 bp
ATGAGAACTCCCACTTTCTCTTTCACAACTCTCCCTCTCTACCTCCTCTTCTTCTTCTTCTCCTTCAATGCCATTACTGCCAAAAACCTCATCCCTGAAACTTGCAAAAAATTTGCTCAATACGATCCAAACCTAAGCTACAATTTCTGCGTAACCTCTCTGCAAGCAGCGCCGAAAAGCCAGCGCGCCGATCTTCACAAACTCGGCATAATCTCAATCAAGTTAATCCGCAACAACGCTACGGACACGAGGCATTACATCAAACACCTGCTGAAAAACAAAAAGCTCGATCCCTACGTAAGGGCGTATTTGGGCGACTGCTTGGAGCTTTACTCAGATGCCATACCAACCATCAAGAAAGCCCTCATGAATTACAAGGCCAAGAAATACAACGACGCCAACATTGAAGTGAGTTCTGTCATTGATGCCTCCATAACTTGTGAAGATGGATTCAAGCAAGGACGGTTGGTTTCGCCGTTAACGAAGCGAAACAACTATACGTTTCAGTTGTCGATTATAGCACTGTCTTTTATCAATCTGCATAATTCACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

186

Amino Acids

21.15

Weight (kDa)

9.53

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 30 - 176 1.7e-27 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 276
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 119, 284
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 396
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 3 cut(s) 67, 407, 454
AluBI AGCT 3 cut(s) 138, 286, 328
AluI AGCT 3 cut(s) 138, 286, 328
AlwI GGATC 2 cut(s) 119, 284
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 3 cut(s) 172, 186, 188
BauI CACGAG 1 cut(s) 247
BbvI GCAGC 1 cut(s) 179
BccI CCATC 2 cut(s) 359, 440
BceAI ACGGC 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 173
BfuAI ACCTGC 1 cut(s) 276
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
BmsI GCATC 2 cut(s) 328, 415
BplI GAGNNNNNCTC 2 cut(s) 317, 349
Bpu10I CCTNAGC 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 348
BsePI GCGCGC 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 300
BsnI GGCC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 124, 190, 289
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 347
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 366
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 119, 284
BssHII GCGCGC 1 cut(s) 184
BssMI GATC 3 cut(s) 124, 190, 289
BssNI GRCGYC 1 cut(s) 396
BssSI CACGAG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 465, 525
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 165, 182, 186
BstDEI CTNAG 2 cut(s) 134, 334
BstENI CCTNNNNNAGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 90
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 3 cut(s) 172, 186, 188
BstKTI GATC 3 cut(s) 127, 193, 292
BstMBI GATC 3 cut(s) 124, 190, 289
BstMWI GCNNNNNNNGC 2 cut(s) 77, 169
BstSNI TACGTA 1 cut(s) 298
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 380
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 521
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 3 cut(s) 165, 182, 186
CciI TCATGA 1 cut(s) 366
CfoI GCGC 3 cut(s) 172, 186, 188
CseI GACGC 1 cut(s) 404
CviAII CATG 1 cut(s) 367
CviJI RGCY 6 cut(s) 138, 180, 286, 328, 362, 380
CviKI_1 RGCY 6 cut(s) 138, 180, 286, 328, 362, 380
DdeI CTNAG 2 cut(s) 134, 334
DpnI GATC 3 cut(s) 126, 192, 291
DpnII GATC 3 cut(s) 124, 190, 289
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco105I TACGTA 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 298
FaeI CATG 1 cut(s) 370
FaiI YATR 7 cut(s) 209, 344, 368, 434, 498, 518, 543
FatI CATG 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 168
GlaI GCGC 3 cut(s) 171, 185, 187
GluI GCNGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 380
HgaI GACGC 1 cut(s) 404
HhaI GCGC 3 cut(s) 172, 186, 188
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 3 cut(s) 170, 184, 186
HinP1I GCGC 3 cut(s) 170, 184, 186
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HinfI GANTC 1 cut(s) 450
HpaI GTTAAC 1 cut(s) 480
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 2 cut(s) 355, 367
Hpy8I GTNNAC 1 cut(s) 480
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 2 cut(s) 465, 525
HpyCH4IV ACGT 2 cut(s) 297, 500
HpyCH4V TGCA 3 cut(s) 105, 163, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 169
HpyF3I CTNAG 2 cut(s) 134, 334
HpySE526I ACGT 2 cut(s) 297, 500
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 3 cut(s) 170, 184, 186
KspAI GTTAAC 1 cut(s) 480
Kzo9I GATC 3 cut(s) 124, 190, 289
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 3 cut(s) 108, 194, 281
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 2 cut(s) 328, 415
MaeII ACGT 2 cut(s) 297, 500
MaeIII GTNAC 1 cut(s) 151
MalI GATC 3 cut(s) 126, 192, 291
MboI GATC 3 cut(s) 124, 190, 289
MboII GAAGA 6 cut(s) 40, 43, 46, 49, 185, 455
MluCI AATT 5 cut(s) 110, 142, 370, 544, 553
MnlI CCTC 8 cut(s) 45, 53, 56, 98, 166, 243, 374, 439
MseI TTAA 3 cut(s) 224, 479, 556
MslI CAYNNNNRTG 1 cut(s) 407
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 77, 169
NdeII GATC 3 cut(s) 124, 190, 289
NlaIII CATG 1 cut(s) 370
NmeAIII GCCGAG 1 cut(s) 183
PagI TCATGA 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 276
PauI GCGCGC 1 cut(s) 184
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 479
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 298
PteI GCGCGC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 3 cut(s) 224, 479, 556
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 3 cut(s) 124, 190, 289
SfaNI GCATC 2 cut(s) 328, 415
SmiMI CAYNNNNRTG 1 cut(s) 407
SnaBI TACGTA 1 cut(s) 298
Sse9I AATT 5 cut(s) 110, 142, 370, 544, 553
SsiI CCGC 1 cut(s) 229
TaaI ACNGT 2 cut(s) 465, 525
TaiI ACGT 2 cut(s) 300, 503
TaqI TCGA 2 cut(s) 288, 512
TasI AATT 5 cut(s) 110, 142, 370, 544, 553
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 3 cut(s) 224, 479, 556
Tru9I TTAA 3 cut(s) 224, 479, 556
TscAI CASTG 1 cut(s) 528
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 383
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 528
XagI CCTNNNNNAGG 1 cut(s) 298
XapI RAATTY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.