Rorug01G0170900

invertase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001702
Physical Location & Seq
Forward (+)
23243647 .. 23251248
7602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0170900.1

Sequence Viewer

Length: 405 bp
ATGGTCAACATACATTGTGACAGTGTCTTGTTTCAGTATGGCCAAGACCCGATCAAAAGTTGCGTTGCATATGATTATTTTCTTCTCTACGTGTTACACAAAACCCTACTAGGCTACTATCATGTTCCTTTTTTTTTTTTTTTTTATCACACCTACTATCATGTCAAAAACCCAAACCTTATTCCTTGGAGGCTCAGAACTCGTTGGTTTAATTATGTACTCAGGTCTCGGCAAATGACTTTCCATGTATCACACATCTTTAGGGAAGGGAACAGAGTAGCAGACAAGCTGGCTAATTATGGTGCTTTGCATGATGGAGCGGTATGGTGGATTGCCCTCCCGTCCATTATTACTTCCGAGTTTGGTCATGATTACTCTTCGCGTACTAGCTATCGGTTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

134

Amino Acids

16.16

Weight (kDa)

9.27

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 382
AciI CCGC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 40
AfaI GTAC 2 cut(s) 219, 385
AflIII ACRYGT 1 cut(s) 90
AluBI AGCT 2 cut(s) 289, 390
AluI AGCT 2 cut(s) 289, 390
Alw26I GTCTC 1 cut(s) 231
AoxI GGCC 1 cut(s) 40
BalI TGGCCA 1 cut(s) 42
BccI CCATC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 2 cut(s) 110, 387
BsaAI YACGTR 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 185
BseMII CTCAG 2 cut(s) 208, 235
Bsh1236I CGCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 42
Bso31I GGTCTC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 207, 234
BspFNI CGCG 1 cut(s) 382
BspHI TCATGA 1 cut(s) 367
BspTNI GGTCTC 1 cut(s) 231
BsrBI CCGCTC 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 382
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 194, 221, 402
BstFNI CGCG 1 cut(s) 382
BstKTI GATC 1 cut(s) 54
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 51
BstUI CGCG 1 cut(s) 382
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 367
Csp6I GTAC 2 cut(s) 218, 384
CviAII CATG 5 cut(s) 122, 161, 245, 311, 368
CviJI RGCY 6 cut(s) 42, 114, 193, 289, 293, 390
CviKI_1 RGCY 6 cut(s) 42, 114, 193, 289, 293, 390
CviQI GTAC 2 cut(s) 218, 384
DdeI CTNAG 3 cut(s) 194, 221, 402
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 5 cut(s) 125, 164, 248, 314, 371
FatI CATG 5 cut(s) 121, 160, 244, 310, 367
FauNDI CATATG 1 cut(s) 70
FspBI CTAG 2 cut(s) 110, 387
HaeIII GGCC 1 cut(s) 42
Hin1II CATG 5 cut(s) 125, 164, 248, 314, 371
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 197, 358
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 68, 310
HpyF3I CTNAG 3 cut(s) 194, 221, 402
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 5 cut(s) 125, 164, 248, 314, 371
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 2 cut(s) 208, 275
MaeI CTAG 2 cut(s) 110, 387
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 17, 93
MalI GATC 1 cut(s) 53
MbiI CCGCTC 1 cut(s) 320
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 74, 369
MlsI TGGCCA 1 cut(s) 42
MluCI AATT 2 cut(s) 211, 295
MluNI TGGCCA 1 cut(s) 42
MnlI CCTC 2 cut(s) 183, 347
Mox20I TGGCCA 1 cut(s) 42
MscI TGGCCA 1 cut(s) 42
MseI TTAA 1 cut(s) 210
Msp20I TGGCCA 1 cut(s) 42
MvnI CGCG 1 cut(s) 382
NdeI CATATG 1 cut(s) 70
NdeII GATC 1 cut(s) 51
NlaIII CATG 5 cut(s) 125, 164, 248, 314, 371
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 17
PagI TCATGA 1 cut(s) 367
PflFI GACNNNGTC 1 cut(s) 23
Ppu21I YACGTR 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 2 cut(s) 219, 385
RsaNI GTAC 2 cut(s) 218, 384
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 1 cut(s) 51
SetI ASST 6 cut(s) 93, 155, 180, 227, 291, 392
Sse9I AATT 2 cut(s) 211, 295
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 110, 387
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 93
TasI AATT 2 cut(s) 211, 295
TatI WGTACW 1 cut(s) 217
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspRI CASTG 1 cut(s) 28
Tth111I GACNNNGTC 1 cut(s) 23
XspI CTAG 2 cut(s) 110, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.