Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001702

Physical Location & Seq

Genomic Coordinates Reverse (-)

5172883 .. 5173482

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTATCACATTTCTTTCTTTTTAAACTGCTGCTGCTTGTTTTTCCTTGTAATTCCTCATTCAAAATTCTCCACCATTGCTGCAACAGCTGTTGATATAATCGACCAAACCTGCAAAAAATGCACAGATGAATTTGACGTCATTAGCTACAAGGTTTGCGCAACCTCTCTCCAAGCCGTGCCTGTCAGCCATGTGACTAATCTTCAAGGACTAGCATTGATAGCAATGGAGCTAGCACTACAAAATGCAACCAACACACTGTCCACCATAGAGAAGTTCTCGAGTAACAAAAGTTTCGATCCTTTTGCTCTGGTTTGCTTGAAGGACTGCTTGCAGCTATATTCGGATGCGATCACAACACTGAGGGATGCTGTTGGAGCATTTCTGAGGGAGGATTACGACACGGCAAATATCTGGGTGAGTGCAGTTATGGAAGCACCAACTACATGTGAAGAAGGGTTTAAGGAGAAGGAAGGTGAAGTGTCTCCATTGAAAAATGAGAATTACAATCTTTTTCAATTATGTGATATTGCACTATGCATAAGCCACATGCTTAAGTACTTAGGGTCTACATTCTTGACAGGATGCTCTGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

200

Amino Acids

21.98

Weight (kDa)

4.78

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001702)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38610
fragaria_vesca	FvH4_5g19730 FvH4_5g20950 FvH4_7g08770
malus_domestica	MD02G1225200.v1.1 MD06G1041900.v1.1 MD07G1088700.v1.1
prunus_persica	Prupe.2G115600_v2.0.a1 Prupe.3G007700_v2.0.a1 Prupe.3G007800_v2.0.a1 Prupe.3G007900_v2.0.a1 Prupe.3G008000_v2.0.a1 Prupe.5G048600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0344001 RchiOBHm_Chr1g0344031 RchiOBHm_Chr1g0344051 RchiOBHm_Chr7g0208011
rosa_laevigata	RLG00000003263 RLG00000022936 RLG00000028929 RLG00000028933
rosa_multiflora	Rmu_sc0002039.1_g000005 Rmu_sc0011232.1_g000001 Rmu_ssc0000434.1_g000011
rosa_roxburghii	Rroxscaffold_3G00250900 Rroxscaffold_4G00310090 Rroxscaffold_4G00310110
rosa_rugosa	Rorug01G0170900 Rorug01G0171300 Rorug07G0100900
rosa_samantha	Rh1AG187800 Rh1AG188000 Rh1BG153900 Rh1BG154100 Rh1CG173300 Rh1CG173400 Rh1DG186000 Rh1DG186200 Rh7AG235200 Rh7BG230300 Rh7CG249900 Rh7DG240900
rosa_wichuraiana	Rw0G014110 Rw0G014130 Rw0G020330 Rw1G015440 Rw1G015450 Rw1G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
Acc16I	TGCGCA	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	65, 131
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	560
AflII	CTTAAG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	63, 206, 322, 493, 518
AluBI	AGCT	4 cut(s)	89, 147, 232, 337
AluI	AGCT	4 cut(s)	89, 147, 232, 337
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	280
ApeKI	GCWGC	4 cut(s)	30, 33, 80, 334
ApoI	RAATTY	2 cut(s)	65, 131
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	430, 488
AsuNHI	GCTAGC	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	280
BbvI	GCAGC	4 cut(s)	17, 20, 67, 346
BceAI	ACGGC	2 cut(s)	161, 420
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	2 cut(s)	212, 233
BfrI	CTTAAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	4 cut(s)	31, 34, 81, 335
BlsI	GCNGC	4 cut(s)	32, 35, 82, 336
BmcAI	AGTACT	1 cut(s)	560
BmeT110I	CYCGRG	1 cut(s)	280
BmsI	GCATC	3 cut(s)	337, 358, 575
BmtI	GCTAGC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BsaHI	GRCGYC	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	75, 231
BseGI	GGATG	3 cut(s)	352, 373, 590
BseMI	GCAATG	2 cut(s)	75, 231
BseMII	CTCAG	2 cut(s)	353, 377
BseXI	GCAGC	4 cut(s)	17, 20, 67, 346
BsgI	GTGCAG	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	489
BsoBI	CYCGRG	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	298, 351
BspCNI	CTCAG	2 cut(s)	354, 378
BspMI	ACCTGC	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	293
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	75, 231
BssMI	GATC	2 cut(s)	298, 351
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	234, 332
BstDEI	CTNAG	3 cut(s)	362, 386, 562
BstF5I	GGATG	3 cut(s)	352, 373, 590
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	301, 354
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	298, 351
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 120, 221, 377
BstNSI	RCATGY	2 cut(s)	450, 553
BstV1I	GCAGC	4 cut(s)	17, 20, 67, 346
BtsCI	GGATG	3 cut(s)	352, 373, 590
BtsIMutI	CAGTG	2 cut(s)	257, 359
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	234, 332
CfoI	GCGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	3 cut(s)	191, 447, 550
CviJI	RGCY	7 cut(s)	89, 147, 176, 189, 232, 337, 546
CviKI_1	RGCY	7 cut(s)	89, 147, 176, 189, 232, 337, 546
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	3 cut(s)	362, 386, 562
DpnI	GATC	2 cut(s)	300, 353
DpnII	GATC	2 cut(s)	298, 351
DraI	TTTAAA	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	542
FaeI	CATG	3 cut(s)	194, 450, 553
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	3 cut(s)	190, 446, 549
FblI	GTMKAC	1 cut(s)	569
Fnu4HI	GCNGC	4 cut(s)	31, 34, 81, 335
FokI	GGATG	2 cut(s)	359, 380
Fsp4HI	GCNGC	4 cut(s)	31, 34, 81, 335
FspBI	CTAG	2 cut(s)	212, 233
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	4 cut(s)	31, 34, 81, 335
HhaI	GCGC	1 cut(s)	161
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	3 cut(s)	194, 450, 553
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HphI	GGTGA	2 cut(s)	430, 488
Hpy166II	GTNNAC	2 cut(s)	264, 570
Hpy188I	TCNGA	2 cut(s)	346, 387
Hpy188III	TCNNGA	2 cut(s)	280, 577
Hpy8I	GTNNAC	2 cut(s)	264, 570
HpyAV	CCTTC	4 cut(s)	316, 449, 463, 467
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	9 cut(s)	83, 114, 123, 248, 334, 425, 533, 540, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 120, 221, 377
HpyF3I	CTNAG	3 cut(s)	362, 386, 562
HpySE526I	ACGT	1 cut(s)	138
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	194, 450, 553
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	298, 351
LmnI	GCTCC	2 cut(s)	229, 377
LpnPI	CCDG	5 cut(s)	124, 195, 296, 400, 567
Lsp1109I	GCAGC	4 cut(s)	17, 20, 67, 346
LweI	GCATC	3 cut(s)	337, 358, 575
MaeI	CTAG	2 cut(s)	212, 233
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	193, 284
MalI	GATC	2 cut(s)	300, 353
MboI	GATC	2 cut(s)	298, 351
MboII	GAAGA	2 cut(s)	194, 464
MluCI	AATT	5 cut(s)	51, 65, 131, 502, 518
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	5 cut(s)	66, 175, 357, 381, 385
Mph1103I	ATGCAT	1 cut(s)	542
MseI	TTAA	4 cut(s)	23, 462, 555, 598
MspA1I	CMGCKG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	554
MwoI	GCNNNNNNNGC	4 cut(s)	86, 120, 221, 377
NdeII	GATC	2 cut(s)	298, 351
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	3 cut(s)	194, 450, 553
NmuCI	GTSAC	1 cut(s)	193
NsbI	TGCGCA	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	542
NspI	RCATGY	2 cut(s)	450, 553
PaeR7I	CTCGAG	1 cut(s)	280
PciI	ACATGT	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	32, 35, 82, 336
PscI	ACATGT	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	4 cut(s)	23, 462, 555, 598
SatI	GCNGC	4 cut(s)	31, 34, 81, 335
Sau3AI	GATC	2 cut(s)	298, 351
ScaI	AGTACT	1 cut(s)	560
SetI	ASST	9 cut(s)	91, 113, 141, 149, 156, 167, 234, 339, 478
SfaNI	GCATC	3 cut(s)	337, 358, 575
Sfr274I	CTCGAG	1 cut(s)	280
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	280, 554
SmoI	CTYRAG	2 cut(s)	280, 554
Sse9I	AATT	5 cut(s)	51, 65, 131, 502, 518
SspMI	CTAG	2 cut(s)	212, 233
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	102, 281, 297
TasI	AATT	5 cut(s)	51, 65, 131, 502, 518
TatI	WGTACW	1 cut(s)	558
Tru1I	TTAA	4 cut(s)	23, 462, 555, 598
Tru9I	TTAA	4 cut(s)	23, 462, 555, 598
TscAI	CASTG	2 cut(s)	264, 366
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	30, 33, 80, 334
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	264, 366
Vha464I	CTTAAG	1 cut(s)	554
XapI	RAATTY	2 cut(s)	65, 131
XceI	RCATGY	2 cut(s)	450, 553
XhoI	CTCGAG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	569
XspI	CTAG	2 cut(s)	212, 233
ZraI	GACGTC	1 cut(s)	139
ZrmI	AGTACT	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.