Prupe.3G007900_v2.0.a1

inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001702
Physical Location & Seq
Reverse (-)
476936 .. 477537
602 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G007900.1

Sequence Viewer

Length: 528 bp
ATGGAGATGAAATTACTGAGATGGGCTACAATTGTTCTTGCTCTCCTTATTTTTGATCAATCCTTTACATCAGTGGGTGCTGATTTGATAGAGGACACATGCAACAAAACATCTAACTTCAAATTTTGTGTGTCCTTTTTAAGATCAAAGCCTGGTAGTGCTACTGCAGATGTTCAAGGGCTTGCTCAGATCGTGGCTGATCAAATACAAATCAATCTGAAGGATACATTTTCCGAAGCCAGCAAATTATATAAGGAGGCAACTGAGCGAGTTATCAAAGAATGCTTCCAAATATGCTCCGAGATGTACGGCGTAGCTATTGACTACATGAATGGTGTCCTTATAAATCTGAAATCTAAAAACTATAGTAATACAAGGGACGGTCTTTCGGTCGTCTATGGTGACGCAGACACTTGTGAAGAGTCATTCCATGAGGAACCAGTTCGACCATCGCCATTAACGAAAAATAACGATGATGTAAAGAATTTAGCTCTAATTGGTTCGGAGATTGTTCTTATTTTAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

176

Amino Acids

19.4

Weight (kDa)

4.75

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AcsI RAATTY 2 cut(s) 122, 484
AcuI CTGAAG 1 cut(s) 239
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 2 cut(s) 121, 176
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 317, 491
AluI AGCT 2 cut(s) 317, 491
ApoI RAATTY 2 cut(s) 122, 484
Asp700I GAANNNNTTC 1 cut(s) 441
AsuHPI GGTGA 1 cut(s) 413
BccI CCATC 2 cut(s) 15, 457
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 217
BclI TGATCA 2 cut(s) 55, 199
BfmI CTRYAG 2 cut(s) 165, 364
BfuI GTATCC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 440
BseBI CCWGG 1 cut(s) 153
BseMII CTCAG 3 cut(s) 8, 200, 255
BseNI ACTGG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 287
Bsp143I GATC 4 cut(s) 55, 143, 189, 199
BspCNI CTCAG 3 cut(s) 9, 199, 256
BspLI GGNNCC 1 cut(s) 438
BspMAI CTGCAG 1 cut(s) 169
BsrI ACTGG 1 cut(s) 440
BssMI GATC 4 cut(s) 55, 143, 189, 199
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 183, 241
BstDEI CTNAG 3 cut(s) 17, 186, 264
BstKTI GATC 4 cut(s) 58, 146, 192, 202
BstMBI GATC 4 cut(s) 55, 143, 189, 199
BstMCI CGRYCG 1 cut(s) 393
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 2 cut(s) 165, 364
BsuI GTATCC 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 183, 241
CseI GACGC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 99, 328, 431
CviJI RGCY 7 cut(s) 26, 151, 181, 197, 239, 317, 491
CviKI_1 RGCY 7 cut(s) 26, 151, 181, 197, 239, 317, 491
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 17, 186, 264
DpnI GATC 4 cut(s) 57, 145, 191, 201
DpnII GATC 4 cut(s) 55, 143, 189, 199
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco57I CTGAAG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 102, 331, 434
FaiI YATR 9 cut(s) 100, 250, 252, 295, 329, 344, 366, 399, 432
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 98, 327, 430
FbaI TGATCA 2 cut(s) 55, 199
HgaI GACGC 1 cut(s) 413
Hin1II CATG 3 cut(s) 102, 331, 434
HinfI GANTC 1 cut(s) 422
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 6 cut(s) 189, 219, 235, 301, 351, 505
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4V TGCA 2 cut(s) 102, 167
HpyF3I CTNAG 3 cut(s) 17, 186, 264
Hsp92II CATG 3 cut(s) 102, 331, 434
Ksp22I TGATCA 2 cut(s) 55, 199
Kzo9I GATC 4 cut(s) 55, 143, 189, 199
LmnI GCTCC 1 cut(s) 302
LpnPI CCDG 4 cut(s) 138, 165, 253, 453
MaeIII GTNAC 1 cut(s) 401
MalI GATC 4 cut(s) 57, 145, 191, 201
MboI GATC 4 cut(s) 55, 143, 189, 199
MboII GAAGA 1 cut(s) 431
MfeI CAATTG 1 cut(s) 30
MluCI AATT 6 cut(s) 11, 30, 122, 245, 484, 495
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 3 cut(s) 85, 250, 427
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 3 cut(s) 140, 458, 526
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 287
MvaI CCWGG 1 cut(s) 153
NdeII GATC 4 cut(s) 55, 143, 189, 199
NlaIII CATG 3 cut(s) 102, 331, 434
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 401
NspI RCATGY 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PctI GAATGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 441
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 438
PstI CTGCAG 1 cut(s) 169
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 140, 458, 526
Sau3AI GATC 4 cut(s) 55, 143, 189, 199
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 319, 493, 526
SfcI CTRYAG 2 cut(s) 165, 364
Sse9I AATT 6 cut(s) 11, 30, 122, 245, 484, 495
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 383
TaqI TCGA 1 cut(s) 445
TaqII GACCGA 1 cut(s) 379
TasI AATT 6 cut(s) 11, 30, 122, 245, 484, 495
Tru1I TTAA 3 cut(s) 140, 458, 526
Tru9I TTAA 3 cut(s) 140, 458, 526
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 23, 344
TspRI CASTG 1 cut(s) 78
XapI RAATTY 2 cut(s) 122, 484
XceI RCATGY 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.