RchiOBHm_Chr1g0344031

invertase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001702
Physical Location & Seq
Reverse (-)
36421433 .. 36422048
616 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57051

Sequence Viewer

Length: 564 bp
ATGACAACTCCCATATTCACCTTCACATTCCTCCCTCTCTTCCTCCTCTTCTCATCAACCTTCACTCCCATAACTGCCAACAATGTCATCTCTGAAATCTGCAAGAAATGTGCTCAAGAAGAGTACACCAGCATGAGCTACAAGTTCTGCGTGACTTCTCTCCAAGCCGACCCAAACAGCCAAGGCGCCGATCTCCGGCAACTTGGCCTCATATCCATGAAGCTAGTCAAGAACAATGTGACCAACACAAGGCGCTTCATCAAGAATCTTCTCAAGAACGAGGAGCTTGACAAGTTCGTAAGGATGTGTTTGGATGACTGTTTGGACCTTTACACAGACGCCATAACTAGCATCAAGCAAGCCGTCAAGGATTACAAAATGAAGGACAACAGACACGCCAATCTCGCAGTGAGTTCGGTCGCCGGTGCCGCCACGACTTGCGAAGATGGATTCGAAGAGACACCAGGGTTGGTTTCGCCATTAACGAAGAGGAACAACGAGATGTCTCAGCTGTGTGATATAGCGCTTATGATTATCACTATGGTCAGTTCGTCGTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMEI

Protein Analysis

187

Amino Acids

20.96

Weight (kDa)

5.86

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 29 - 178 6e-28 Plant invertase/pectin methylesterase inhibitor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 185, 425
AciI CCGC 1 cut(s) 429
AcyI GRCGYC 2 cut(s) 186, 339
AfaI GTAC 1 cut(s) 125
AfeI AGCGCT 1 cut(s) 525
AfiI CCNNNNNNNGG 2 cut(s) 195, 249
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 4 cut(s) 138, 223, 286, 511
AluI AGCT 4 cut(s) 138, 223, 286, 511
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 452, 510
Aor51HI AGCGCT 1 cut(s) 525
AoxI GGCC 1 cut(s) 205
AspLEI GCGC 3 cut(s) 188, 255, 526
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 10
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 1 cut(s) 325
BanI GGYRCC 2 cut(s) 185, 425
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 347
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BciT130I CCWGG 1 cut(s) 465
BcoDI GTCTC 2 cut(s) 452, 510
BfaI CTAG 2 cut(s) 224, 348
BfoI RGCGCY 3 cut(s) 189, 256, 527
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 2 cut(s) 187, 427
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 453
BpuEI CTTGAG 2 cut(s) 99, 257
BsaHI GRCGYC 2 cut(s) 186, 339
BsaJI CCNNGG 2 cut(s) 181, 464
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 249
Bse118I RCCGGY 1 cut(s) 422
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 181, 464
BseGI GGATG 2 cut(s) 309, 319
BseLI CCNNNNNNNGG 2 cut(s) 195, 249
BseMII CTCAG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 35, 296
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 2 cut(s) 185, 425
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 196, 423
BslI CCNNNNNNNGG 2 cut(s) 195, 249
BsmAI GTCTC 2 cut(s) 452, 510
BsnI GGCC 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 187, 427
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 2 cut(s) 185, 425
BsrFI RCCGGY 1 cut(s) 422
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 181, 464
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 2 cut(s) 186, 339
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 5 cut(s) 44, 53, 114, 450, 482
BstACI GRCGYC 2 cut(s) 186, 339
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 309, 319
BstH2I RGCGCY 3 cut(s) 189, 256, 527
BstHHI GCGC 3 cut(s) 188, 255, 526
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 452, 510
BstMBI GATC 1 cut(s) 190
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 2 cut(s) 404, 428
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 309, 319
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 3 cut(s) 188, 255, 526
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 325
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 133, 217
CviJI RGCY 8 cut(s) 138, 167, 180, 207, 223, 286, 362, 511
CviKI_1 RGCY 8 cut(s) 138, 167, 180, 207, 223, 286, 362, 511
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 507
DinI GGCGCC 1 cut(s) 187
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 5 cut(s) 44, 53, 114, 450, 482
EarI CTCTTC 5 cut(s) 44, 53, 114, 450, 482
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 325
Eco47III AGCGCT 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 181
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 136, 220
FaiI YATR 9 cut(s) 14, 71, 134, 212, 218, 344, 521, 530, 542
FatI CATG 2 cut(s) 132, 216
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 2 cut(s) 316, 326
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 2 cut(s) 224, 348
GlaI GCGC 3 cut(s) 187, 254, 525
GluI GCNGC 1 cut(s) 429
HaeII RGCGCY 3 cut(s) 189, 256, 527
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 196, 423
HgaI GACGC 1 cut(s) 347
HhaI GCGC 3 cut(s) 188, 255, 526
Hin1I GRCGYC 2 cut(s) 186, 339
Hin1II CATG 2 cut(s) 136, 220
Hin6I GCGC 3 cut(s) 186, 253, 524
HinP1I GCGC 3 cut(s) 186, 253, 524
HinfI GANTC 2 cut(s) 265, 450
HpaII CCGG 2 cut(s) 196, 423
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 4 cut(s) 116, 229, 262, 274
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 3 cut(s) 31, 70, 376
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 428
HpyF3I CTNAG 1 cut(s) 507
Hsp92I GRCGYC 2 cut(s) 186, 339
Hsp92II CATG 2 cut(s) 136, 220
HspAI GCGC 3 cut(s) 186, 253, 524
KasI GGCGCC 1 cut(s) 185
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 5 cut(s) 142, 209, 436, 450, 477
LweI GCATC 1 cut(s) 360
MaeI CTAG 2 cut(s) 224, 348
MaeIII GTNAC 2 cut(s) 151, 238
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 7 cut(s) 31, 40, 131, 260, 455, 467, 499
MhlI GDGCHC 1 cut(s) 115
Mly113I GGCGCC 1 cut(s) 186
MnlI CCTC 7 cut(s) 41, 45, 53, 56, 218, 274, 483
MseI TTAA 2 cut(s) 482, 562
MslI CAYNNNNRTG 2 cut(s) 131, 215
MspA1I CMGCKG 1 cut(s) 511
MspI CCGG 2 cut(s) 196, 423
MspR9I CCNGG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 2 cut(s) 404, 428
NarI GGCGCC 1 cut(s) 186
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 136, 220
NlaIV GGNNCC 2 cut(s) 187, 427
NmuCI GTSAC 2 cut(s) 151, 238
NspV TTCGAA 1 cut(s) 453
PcsI WCGNNNNNNNCGW 1 cut(s) 482
PfeI GAWTC 2 cut(s) 265, 450
PkrI GCNGC 1 cut(s) 430
PluTI GGCGCC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 187, 427
PspPI GGNCC 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 131, 215
SaqAI TTAA 2 cut(s) 482, 562
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 115
SetI ASST 7 cut(s) 23, 62, 140, 225, 288, 330, 513
SfaNI GCATC 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 453
SgrAI CRCCGGYG 1 cut(s) 422
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 2 cut(s) 131, 215
SmlI CTYRAG 2 cut(s) 114, 272
SmoI CTYRAG 2 cut(s) 114, 272
SsiI CCGC 1 cut(s) 429
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 224, 348
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 453
TaqII GACCGA 1 cut(s) 406
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 2 cut(s) 265, 450
Tru1I TTAA 2 cut(s) 482, 562
Tru9I TTAA 2 cut(s) 482, 562
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 2 cut(s) 151, 238
Tsp45I GTSAC 2 cut(s) 151, 238
TspDTI ATGAA 3 cut(s) 233, 247, 395
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 325
XspI CTAG 2 cut(s) 224, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.