a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_C_3 | PF13625 | 66 - 189 | 1.6e-33 | Helicase conserved C-terminal domain |
| ResIII | PF04851 | 281 - 438 | 8e-19 | Type III restriction enzyme, res subunit |
| ERCC3_RAD25_C | PF16203 | 463 - 711 | 2.3e-116 | ERCC3/RAD25/XPB C-terminal helicase |
| Helicase_C | PF00271 | 513 - 615 | 4.7e-13 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1810 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 584 |
| AccI | GTMKAC | 2 cut(s) | 1043, 2199 |
| AccII | CGCG | 2 cut(s) | 2018, 2149 |
| AccIII | TCCGGA | 2 cut(s) | 1632, 2011 |
| AciI | CCGC | 2 cut(s) | 959, 2018 |
| AclI | AACGTT | 3 cut(s) | 84, 1822, 2290 |
| AclWI | GGATC | 3 cut(s) | 186, 1020, 2170 |
| AcsI | RAATTY | 2 cut(s) | 1538, 1680 |
| AcuI | CTGAAG | 6 cut(s) | 772, 848, 1182, 1446, 1490, 1782 |
| AcyI | GRCGYC | 1 cut(s) | 1807 |
| AfaI | GTAC | 2 cut(s) | 44, 1889 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| AjnI | CCWGG | 2 cut(s) | 637, 855 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 455, 487 |
| AleI | CACNNNNGTG | 1 cut(s) | 1310 |
| AluBI | AGCT | 7 cut(s) | 257, 397, 412, 929, 1291, 1983, 2028 |
| AluI | AGCT | 7 cut(s) | 257, 397, 412, 929, 1291, 1983, 2028 |
| Alw26I | GTCTC | 5 cut(s) | 224, 359, 1009, 2064, 2082 |
| AlwI | GGATC | 3 cut(s) | 186, 1020, 2170 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 638, 1533 |
| Ama87I | CYCGRG | 2 cut(s) | 416, 1685 |
| Aor13HI | TCCGGA | 2 cut(s) | 1632, 2011 |
| AoxI | GGCC | 5 cut(s) | 191, 296, 848, 1020, 1354 |
| ApeKI | GCWGC | 7 cut(s) | 344, 668, 671, 674, 736, 956, 1213 |
| ApoI | RAATTY | 2 cut(s) | 1538, 1680 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1586, 1618 |
| AspLEI | GCGC | 1 cut(s) | 1501 |
| AspS9I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| AsuC2I | CCSGG | 3 cut(s) | 417, 418, 515 |
| AsuHPI | GGTGA | 5 cut(s) | 140, 498, 602, 632, 1751 |
| AvaI | CYCGRG | 2 cut(s) | 416, 1685 |
| AvaII | GGWCC | 1 cut(s) | 635 |
| AxyI | CCTNAGG | 1 cut(s) | 1838 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 26, 58 |
| BauI | CACGAG | 2 cut(s) | 120, 311 |
| BbsI | GAAGAC | 2 cut(s) | 1326, 2127 |
| BbvI | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 968, 1200 |
| BccI | CCATC | 4 cut(s) | 119, 206, 587, 2123 |
| BceAI | ACGGC | 1 cut(s) | 1053 |
| BciT130I | CCWGG | 2 cut(s) | 639, 857 |
| BciVI | GTATCC | 1 cut(s) | 1844 |
| BclI | TGATCA | 2 cut(s) | 58, 1773 |
| BcnI | CCSGG | 3 cut(s) | 417, 418, 515 |
| BcoDI | GTCTC | 5 cut(s) | 224, 359, 1009, 2064, 2082 |
| BfaI | CTAG | 4 cut(s) | 941, 1292, 1382, 1803 |
| BfmI | CTRYAG | 1 cut(s) | 954 |
| BfoI | RGCGCY | 1 cut(s) | 1502 |
| BfuI | GTATCC | 1 cut(s) | 1844 |
| BglII | AGATCT | 1 cut(s) | 899 |
| BisI | GCNGC | 8 cut(s) | 345, 669, 672, 675, 737, 957, 960, 1214 |
| BlsI | GCNGC | 8 cut(s) | 346, 670, 673, 676, 738, 958, 961, 1215 |
| Bme1390I | CCNGG | 5 cut(s) | 417, 418, 515, 639, 857 |
| Bme18I | GGWCC | 1 cut(s) | 635 |
| BmeT110I | CYCGRG | 2 cut(s) | 416, 1685 |
| BmgT120I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| BmiI | GGNNCC | 1 cut(s) | 1239 |
| BmrFI | CCNGG | 5 cut(s) | 417, 418, 515, 639, 857 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 1326, 2127 |
| BpmI | CTGGAG | 1 cut(s) | 2106 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1845 |
| BpuEI | CTTGAG | 1 cut(s) | 383 |
| BpuMI | CCSGG | 3 cut(s) | 417, 418, 515 |
| Bsa29I | ATCGAT | 1 cut(s) | 2165 |
| BsaHI | GRCGYC | 1 cut(s) | 1807 |
| BsaJI | CCNNGG | 6 cut(s) | 416, 417, 638, 845, 1099, 1972 |
| BsaWI | WCCGGW | 3 cut(s) | 1632, 2011, 2180 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 223, 253 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| Bse1I | ACTGG | 2 cut(s) | 723, 1701 |
| Bse21I | CCTNAGG | 1 cut(s) | 1838 |
| Bse3DI | GCAATG | 3 cut(s) | 276, 1629, 2181 |
| BseAI | TCCGGA | 2 cut(s) | 1632, 2011 |
| BseBI | CCWGG | 2 cut(s) | 639, 857 |
| BseCI | ATCGAT | 1 cut(s) | 2165 |
| BseDI | CCNNGG | 6 cut(s) | 416, 417, 638, 845, 1099, 1972 |
| BseGI | GGATG | 3 cut(s) | 61, 435, 1776 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| BseMI | GCAATG | 3 cut(s) | 276, 1629, 2181 |
| BseMII | CTCAG | 4 cut(s) | 291, 550, 564, 2229 |
| BseNI | ACTGG | 2 cut(s) | 723, 1701 |
| BseRI | GAGGAG | 3 cut(s) | 152, 160, 231 |
| BseXI | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 968, 1200 |
| BsgI | GTGCAG | 1 cut(s) | 699 |
| Bsh1236I | CGCG | 2 cut(s) | 2018, 2149 |
| Bsh1285I | CGRYCG | 1 cut(s) | 606 |
| BshFI | GGCC | 5 cut(s) | 193, 298, 850, 1022, 1356 |
| BshVI | ATCGAT | 1 cut(s) | 2165 |
| BsiEI | CGRYCG | 1 cut(s) | 606 |
| BsiHKCI | CYCGRG | 2 cut(s) | 416, 1685 |
| BsiSI | CCGG | 6 cut(s) | 176, 417, 515, 1633, 2012, 2181 |
| BslFI | GGGAC | 1 cut(s) | 1422 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| BsmAI | GTCTC | 5 cut(s) | 224, 359, 1009, 2064, 2082 |
| BsmBI | CGTCTC | 1 cut(s) | 2082 |
| BsmFI | GGGAC | 1 cut(s) | 1422 |
| BsmI | GAATGC | 3 cut(s) | 1003, 1895, 2086 |
| BsnI | GGCC | 5 cut(s) | 193, 298, 850, 1022, 1356 |
| BsoBI | CYCGRG | 2 cut(s) | 416, 1685 |
| Bsp13I | TCCGGA | 2 cut(s) | 1632, 2011 |
| BspACI | CCGC | 2 cut(s) | 959, 2018 |
| BspANI | GGCC | 5 cut(s) | 193, 298, 850, 1022, 1356 |
| BspCNI | CTCAG | 4 cut(s) | 292, 549, 565, 2228 |
| BspDI | ATCGAT | 1 cut(s) | 2165 |
| BspEI | TCCGGA | 2 cut(s) | 1632, 2011 |
| BspFNI | CGCG | 2 cut(s) | 2018, 2149 |
| BspHI | TCATGA | 1 cut(s) | 1509 |
| BspLI | GGNNCC | 1 cut(s) | 1239 |
| BspMAI | CTGCAG | 1 cut(s) | 958 |
| BspPI | GGATC | 3 cut(s) | 186, 1020, 2170 |
| BsrDI | GCAATG | 3 cut(s) | 276, 1629, 2181 |
| BsrI | ACTGG | 2 cut(s) | 723, 1701 |
| BssECI | CCNNGG | 6 cut(s) | 416, 417, 638, 845, 1099, 1972 |
| BssNI | GRCGYC | 1 cut(s) | 1807 |
| BssSI | CACGAG | 2 cut(s) | 120, 311 |
| BssT1I | CCWWGG | 2 cut(s) | 845, 1972 |
| Bst2BI | CACGAG | 2 cut(s) | 120, 311 |
| Bst2UI | CCWGG | 2 cut(s) | 639, 857 |
| Bst4CI | ACNGT | 6 cut(s) | 47, 1652, 1711, 1720, 2042, 2055 |
| Bst6I | CTCTTC | 5 cut(s) | 137, 675, 968, 1878, 2067 |
| BstACI | GRCGYC | 1 cut(s) | 1807 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 998 |
| BstC8I | GCNNGC | 3 cut(s) | 296, 746, 1289 |
| BstDEI | CTNAG | 7 cut(s) | 300, 402, 536, 573, 1838, 1845, 2215 |
| BstDSI | CCRYGG | 1 cut(s) | 1099 |
| BstEII | GGTNACC | 1 cut(s) | 2234 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1730 |
| BstF5I | GGATG | 3 cut(s) | 61, 435, 1776 |
| BstFNI | CGCG | 2 cut(s) | 2018, 2149 |
| BstH2I | RGCGCY | 1 cut(s) | 1502 |
| BstHHI | GCGC | 1 cut(s) | 1501 |
| BstMAI | GTCTC | 5 cut(s) | 224, 359, 1009, 2064, 2082 |
| BstMCI | CGRYCG | 1 cut(s) | 606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 449, 665, 674, 745, 998 |
| BstNI | CCWGG | 2 cut(s) | 639, 857 |
| BstNSI | RCATGY | 2 cut(s) | 1235, 1796 |
| BstPI | GGTNACC | 1 cut(s) | 2234 |
| BstSCI | CCNGG | 5 cut(s) | 415, 416, 513, 637, 855 |
| BstSFI | CTRYAG | 1 cut(s) | 954 |
| BstUI | CGCG | 2 cut(s) | 2018, 2149 |
| BstV1I | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 968, 1200 |
| BstV2I | GAAGAC | 2 cut(s) | 1326, 2127 |
| BstX2I | RGATCY | 1 cut(s) | 899 |
| BstYI | RGATCY | 1 cut(s) | 899 |
| Bsu15I | ATCGAT | 1 cut(s) | 2165 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1838 |
| BsuI | GTATCC | 1 cut(s) | 1844 |
| BsuRI | GGCC | 5 cut(s) | 193, 298, 850, 1022, 1356 |
| BsuTUI | ATCGAT | 1 cut(s) | 2165 |
| BtgI | CCRYGG | 1 cut(s) | 1099 |
| BtsCI | GGATG | 3 cut(s) | 61, 435, 1776 |
| BtsI | GCAGTG | 1 cut(s) | 1282 |
| BtsIMutI | CAGTG | 5 cut(s) | 544, 716, 1282, 1424, 1716 |
| Cac8I | GCNNGC | 3 cut(s) | 296, 746, 1289 |
| CaiI | CAGNNNCTG | 2 cut(s) | 638, 1533 |
| CciI | TCATGA | 1 cut(s) | 1509 |
| CfoI | GCGC | 1 cut(s) | 1501 |
| Cfr13I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| Cfr9I | CCCGGG | 1 cut(s) | 416 |
| ClaI | ATCGAT | 1 cut(s) | 2165 |
| CseI | GACGC | 2 cut(s) | 2024, 2155 |
| Csp6I | GTAC | 2 cut(s) | 43, 1888 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 318, 353, 598, 633 |
| CviQI | GTAC | 2 cut(s) | 43, 1888 |
| DdeI | CTNAG | 7 cut(s) | 300, 402, 536, 573, 1838, 1845, 2215 |
| DraI | TTTAAA | 2 cut(s) | 1341, 1696 |
| Eam1104I | CTCTTC | 5 cut(s) | 137, 675, 968, 1878, 2067 |
| EarI | CTCTTC | 5 cut(s) | 137, 675, 968, 1878, 2067 |
| Eco130I | CCWWGG | 2 cut(s) | 845, 1972 |
| Eco147I | AGGCCT | 2 cut(s) | 193, 298 |
| Eco32I | GATATC | 1 cut(s) | 1756 |
| Eco47I | GGWCC | 1 cut(s) | 635 |
| Eco57I | CTGAAG | 6 cut(s) | 772, 848, 1182, 1446, 1490, 1782 |
| Eco81I | CCTNAGG | 1 cut(s) | 1838 |
| Eco88I | CYCGRG | 2 cut(s) | 416, 1685 |
| Eco91I | GGTNACC | 1 cut(s) | 2234 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1730 |
| EcoO109I | RGGNCCY | 1 cut(s) | 635 |
| EcoO65I | GGTNACC | 1 cut(s) | 2234 |
| EcoRII | CCWGG | 2 cut(s) | 637, 855 |
| EcoRV | GATATC | 1 cut(s) | 1756 |
| EcoT14I | CCWWGG | 2 cut(s) | 845, 1972 |
| EcoT22I | ATGCAT | 1 cut(s) | 1897 |
| ErhI | CCWWGG | 2 cut(s) | 845, 1972 |
| Esp3I | CGTCTC | 1 cut(s) | 2082 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 209, 241, 553, 585 |
| FaqI | GGGAC | 1 cut(s) | 1422 |
| FauI | CCCGC | 1 cut(s) | 2011 |
| FauNDI | CATATG | 1 cut(s) | 1248 |
| FbaI | TGATCA | 2 cut(s) | 58, 1773 |
| FblI | GTMKAC | 2 cut(s) | 1043, 2199 |
| Fnu4HI | GCNGC | 8 cut(s) | 345, 669, 672, 675, 737, 957, 960, 1214 |
| FokI | GGATG | 3 cut(s) | 68, 422, 1763 |
| Fsp4HI | GCNGC | 8 cut(s) | 345, 669, 672, 675, 737, 957, 960, 1214 |
| FspBI | CTAG | 4 cut(s) | 941, 1292, 1382, 1803 |
| GlaI | GCGC | 1 cut(s) | 1500 |
| GluI | GCNGC | 8 cut(s) | 345, 669, 672, 675, 737, 957, 960, 1214 |
| GsuI | CTGGAG | 1 cut(s) | 2106 |
| HaeII | RGCGCY | 1 cut(s) | 1502 |
| HaeIII | GGCC | 5 cut(s) | 193, 298, 850, 1022, 1356 |
| HapII | CCGG | 6 cut(s) | 176, 417, 515, 1633, 2012, 2181 |
| HgaI | GACGC | 2 cut(s) | 2024, 2155 |
| HhaI | GCGC | 1 cut(s) | 1501 |
| Hin1I | GRCGYC | 1 cut(s) | 1807 |
| Hin6I | GCGC | 1 cut(s) | 1499 |
| HinP1I | GCGC | 1 cut(s) | 1499 |
| HindIII | AAGCTT | 2 cut(s) | 255, 2026 |
| HinfI | GANTC | 4 cut(s) | 116, 302, 503, 1095 |
| HpaII | CCGG | 6 cut(s) | 176, 417, 515, 1633, 2012, 2181 |
| HphI | GGTGA | 5 cut(s) | 140, 498, 602, 632, 1751 |
| Hpy166II | GTNNAC | 6 cut(s) | 623, 1044, 1154, 1714, 1853, 2200 |
| Hpy188I | TCNGA | 6 cut(s) | 574, 1081, 1162, 1470, 1529, 2069 |
| Hpy8I | GTNNAC | 6 cut(s) | 623, 1044, 1154, 1714, 1853, 2200 |
| Hpy99I | CGWCG | 1 cut(s) | 2154 |
| HpyAV | CCTTC | 3 cut(s) | 46, 125, 2187 |
| HpyCH4III | ACNGT | 6 cut(s) | 47, 1652, 1711, 1720, 2042, 2055 |
| HpyCH4IV | ACGT | 6 cut(s) | 84, 1549, 1567, 1807, 1822, 2290 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 449, 665, 674, 745, 998 |
| HpyF3I | CTNAG | 7 cut(s) | 300, 402, 536, 573, 1838, 1845, 2215 |
| HpySE526I | ACGT | 6 cut(s) | 84, 1549, 1567, 1807, 1822, 2290 |
| Hsp92I | GRCGYC | 1 cut(s) | 1807 |
| HspAI | GCGC | 1 cut(s) | 1499 |
| Kpn2I | TCCGGA | 2 cut(s) | 1632, 2011 |
| Ksp22I | TGATCA | 2 cut(s) | 58, 1773 |
| LmnI | GCTCC | 1 cut(s) | 926 |
| Lsp1109I | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 968, 1200 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 4 cut(s) | 941, 1292, 1382, 1803 |
| MaeII | ACGT | 6 cut(s) | 84, 1549, 1567, 1807, 1822, 2290 |
| MaeIII | GTNAC | 4 cut(s) | 915, 1120, 1788, 2234 |
| MfeI | CAATTG | 1 cut(s) | 1375 |
| MflI | RGATCY | 1 cut(s) | 899 |
| MluCI | AATT | 9 cut(s) | 319, 454, 662, 760, 1028, 1329, 1375, 1538, 1680 |
| MlyI | GAGTC | 1 cut(s) | 311 |
| Mph1103I | ATGCAT | 1 cut(s) | 1897 |
| MroI | TCCGGA | 2 cut(s) | 1632, 2011 |
| MseI | TTAA | 7 cut(s) | 323, 732, 804, 1032, 1340, 1392, 1695 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1310 |
| MspA1I | CMGCKG | 1 cut(s) | 959 |
| MspI | CCGG | 6 cut(s) | 176, 417, 515, 1633, 2012, 2181 |
| MspR9I | CCNGG | 5 cut(s) | 417, 418, 515, 639, 857 |
| MunI | CAATTG | 1 cut(s) | 1375 |
| Mva1269I | GAATGC | 3 cut(s) | 1003, 1895, 2086 |
| MvaI | CCWGG | 2 cut(s) | 639, 857 |
| MvnI | CGCG | 2 cut(s) | 2018, 2149 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 449, 665, 674, 745, 998 |
| NciI | CCSGG | 3 cut(s) | 417, 418, 515 |
| NdeI | CATATG | 1 cut(s) | 1248 |
| NlaIV | GGNNCC | 1 cut(s) | 1239 |
| NmuCI | GTSAC | 2 cut(s) | 1120, 1788 |
| NsiI | ATGCAT | 1 cut(s) | 1897 |
| NspI | RCATGY | 2 cut(s) | 1235, 1796 |
| OliI | CACNNNNGTG | 1 cut(s) | 1310 |
| PaeR7I | CTCGAG | 1 cut(s) | 1685 |
| PagI | TCATGA | 1 cut(s) | 1509 |
| PceI | AGGCCT | 2 cut(s) | 193, 298 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1828 |
| PctI | GAATGC | 3 cut(s) | 1003, 1895, 2086 |
| PfeI | GAWTC | 3 cut(s) | 116, 503, 1095 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 584 |
| PfoI | TCCNGGA | 1 cut(s) | 513 |
| PkrI | GCNGC | 8 cut(s) | 346, 670, 673, 676, 738, 958, 961, 1215 |
| Ple19I | CGATCG | 1 cut(s) | 606 |
| PleI | GAGTC | 1 cut(s) | 310 |
| PpsI | GAGTC | 1 cut(s) | 310 |
| PpuMI | RGGWCCY | 1 cut(s) | 635 |
| Psp1406I | AACGTT | 3 cut(s) | 84, 1822, 2290 |
| Psp5II | RGGWCCY | 1 cut(s) | 635 |
| Psp6I | CCWGG | 2 cut(s) | 637, 855 |
| PspEI | GGTNACC | 1 cut(s) | 2234 |
| PspGI | CCWGG | 2 cut(s) | 637, 855 |
| PspN4I | GGNNCC | 1 cut(s) | 1239 |
| PspPI | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| PspPPI | RGGWCCY | 1 cut(s) | 635 |
| PstI | CTGCAG | 1 cut(s) | 958 |
| PstNI | CAGNNNCTG | 2 cut(s) | 638, 1533 |
| PsuI | RGATCY | 1 cut(s) | 899 |
| PvuI | CGATCG | 1 cut(s) | 606 |
| RsaI | GTAC | 2 cut(s) | 44, 1889 |
| RsaNI | GTAC | 2 cut(s) | 43, 1888 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SaqAI | TTAA | 7 cut(s) | 323, 732, 804, 1032, 1340, 1392, 1695 |
| SatI | GCNGC | 8 cut(s) | 345, 669, 672, 675, 737, 957, 960, 1214 |
| Sau96I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| SchI | GAGTC | 1 cut(s) | 311 |
| ScrFI | CCNGG | 5 cut(s) | 417, 418, 515, 639, 857 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 954 |
| Sfr274I | CTCGAG | 1 cut(s) | 1685 |
| SinI | GGWCC | 1 cut(s) | 635 |
| SlaI | CTCGAG | 1 cut(s) | 1685 |
| SmaI | CCCGGG | 1 cut(s) | 418 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SmlI | CTYRAG | 2 cut(s) | 362, 1685 |
| SmoI | CTYRAG | 2 cut(s) | 362, 1685 |
| Sse9I | AATT | 9 cut(s) | 319, 454, 662, 760, 1028, 1329, 1375, 1538, 1680 |
| SseBI | AGGCCT | 2 cut(s) | 193, 298 |
| SsiI | CCGC | 2 cut(s) | 959, 2018 |
| SspMI | CTAG | 4 cut(s) | 941, 1292, 1382, 1803 |
| StuI | AGGCCT | 2 cut(s) | 193, 298 |
| StyD4I | CCNGG | 5 cut(s) | 415, 416, 513, 637, 855 |
| StyI | CCWWGG | 2 cut(s) | 845, 1972 |
| TaaI | ACNGT | 6 cut(s) | 47, 1652, 1711, 1720, 2042, 2055 |
| TaiI | ACGT | 6 cut(s) | 87, 1552, 1570, 1810, 1825, 2293 |
| TaqI | TCGA | 6 cut(s) | 556, 1484, 1668, 1686, 1968, 2165 |
| TasI | AATT | 9 cut(s) | 319, 454, 662, 760, 1028, 1329, 1375, 1538, 1680 |
| TatI | WGTACW | 1 cut(s) | 1887 |
| TauI | GCSGC | 1 cut(s) | 962 |
| TfiI | GAWTC | 3 cut(s) | 116, 503, 1095 |
| Tru1I | TTAA | 7 cut(s) | 323, 732, 804, 1032, 1340, 1392, 1695 |
| Tru9I | TTAA | 7 cut(s) | 323, 732, 804, 1032, 1340, 1392, 1695 |
| TscAI | CASTG | 5 cut(s) | 544, 723, 1289, 1424, 1723 |
| TseFI | GTSAC | 2 cut(s) | 1120, 1788 |
| TseI | GCWGC | 7 cut(s) | 344, 668, 671, 674, 736, 956, 1213 |
| Tsp45I | GTSAC | 2 cut(s) | 1120, 1788 |
| TspDTI | ATGAA | 9 cut(s) | 27, 53, 83, 424, 669, 1383, 1526, 1572, 1640 |
| TspGWI | ACGGA | 3 cut(s) | 343, 903, 1088 |
| TspMI | CCCGGG | 1 cut(s) | 416 |
| TspRI | CASTG | 5 cut(s) | 544, 723, 1289, 1424, 1723 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 584 |
| VpaK11BI | GGWCC | 1 cut(s) | 635 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1730 |
| XapI | RAATTY | 2 cut(s) | 1538, 1680 |
| XbaI | TCTAGA | 1 cut(s) | 1802 |
| XceI | RCATGY | 2 cut(s) | 1235, 1796 |
| XhoI | CTCGAG | 1 cut(s) | 1685 |
| XmaI | CCCGGG | 1 cut(s) | 416 |
| XmiI | GTMKAC | 2 cut(s) | 1043, 2199 |
| XspI | CTAG | 4 cut(s) | 941, 1292, 1382, 1803 |
| ZraI | GACGTC | 1 cut(s) | 1808 |
| Zsp2I | ATGCAT | 1 cut(s) | 1897 |