Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

1706783 .. 1713747

Gene Structure 6965 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02840.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2307 bp

ATGGGACATGGCGAGAAATCCCACCGACCTAGTAAGAAGCACAAATCGTCGGCCAAGGAAGCGATTCCCGTCGAGGATTTCGAGGCCTACGTCGGCGGCGAGGAGCTCGACGATGACGTCCGCGGCGACGGTGAAGTGAAAAAGAGGGATTTTACTAAGCTGGAATTGAAACCTGATCACCTGAATCGTCCGCTGTGGGCCTGCGCCGATGGAAGAATATTCCTCGAGACTTTCTCGGCTTTGTACAAGCAAGCCTATGATTTCCTCATCGCAATTGCGGAACCGGTTTGCAGGCCGGAGTCGATGCACGAGTACAATTTGACACCGCATTCGCTGTATGCGGCGGTGTCTGTTGGTCTTGAGACGCAGACTATCATTTCGGTTTTGGATAAGCTGTCAAAGACTAAGCTCCCCAAAGAAATGATTGATTTCATACACGGCTCCACGGCTAATTACGGCAAAGTGAAGCTTGTGCTGAAGAAGAATCGGTACTACGTTGAATCCCCTTTCCCGGAGGTTTTGAAGAAATTGCTCAGGGACGACGTCATATCTAAAGCAAGGATTGTTTCCGAGGCTGCTAATGAAAAAGGTGGATTTACAATTAGCAAAACCTTGGGCGAAATTGCAGCCGATTCCAGTGGTTTGTTAAATGAAGCAGAACTGGCAGCTGCGGCTGAAGAAAAAGAAACTCACGCATTTGAAATTGATCCTTCACAGGTTGAGAAAGTAAAGGAACGTTGTTTGCCGAACGCCTTGAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACGGTCAACCCTGATCTTGATATGGAACTCAAGCCTCAAGCTCAACCACGACCATATCAAGAAAAGAGCTTGAGTAAAATGTTTGGAAATGGGAGAGCACGATCAGGCATTATTGTGTTACCTTGTGGTGCTGGAAAATCTCTAGTCGGTGTTTCTGCCGCCTCACGAATAAAAAAGAGCTGCCTTTGTCTAGCAACAAATGCTGTTTCTGTTGATCAATGGGCTTTTCAGTTTAAATTGTGGTCAACTATTCGAGATGAACACATTTGTCGTTTCACATCTGATAGCAAAGAAAGATTTCGTGGAAATGCCGGGGTGGTTGTTACAACATATAACATGGTTGCGTTTGGTGGCAAGAGGTCTGAAGAATCTGAAAAAATTATAGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTGCACGTTGTTCCTGCTCAGATGTTTCGAAAGGTTATTGCAATTACCAAATCACACTGCAAGCTCGGACTGACTGCCACTCTTGTCAGAGAGGATGAGAGGATCACAGATCTGAATTTTCTTATTGGTCCCAAATTATATGAAGCAAACTGGCTGGATCTGGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTGTGGTGTCCAATGACGAAGGAGTTCTTTGCAGAATATTTGAAGAAAGAGAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAATCCAAATAAGTTTAGGGCTTGCGAGTTTCTTATACGGTTTCATGAACAGCAACGTGGTGATAAGATTATTGTCTTTGCTGACAATCTCTTTGCCCTCACGGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGAGCTACCAGCCATGTTGAGAGGACAAAGATCTTAGAAGCCTTCAAAACAAGTAAAGACGTAAATACTGTATTTTTGTCAAAGGTGGGAGATAATTCTATTGACATTCCCGAGGCAAATGTGATTATTCAGATATCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGTCGTATTCTGAGGGCTAAGGGTAAACTTCGGGATCGGATGGCAGGAGGTAAGGAGGAGTATAATGCATTCTTTTATTCGCTCGTGTCAACTGATACACAGGAGATGTACTATTCAACTAAACGACAACAGTTTTTGATTGATCAAGGGTATAGTTTTAAGGTTATTACAAGCTTGCCCCCACCTGATTCAGGAGCTGATTTGAGCTACCACCGTCTCGATGAGCAACTGCAACTACTCTCTAAGGTGTTGACTGCTGGTGATGATGCGGTTGGCTTAGAGCAACTAGACGAAGATATAGATGACATAGCCCTTCTTAAATCGCGTCGTTTTTCAGGATCTATGAGTGCGATGTCGGGTGCCGATGGGAGGGTTTACATGGAATATAGTACTGGCAAAAACAGAAATGGGAAAGGACAGCTGAAGAGTAAGCCCAAGGATCCAGCCAAGAGACATCATTTGTTTAAAAAACGCTTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

769

Amino Acids

86.68

Weight (kDa)

8.69

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	65 - 189	8.2e-34	Helicase conserved C-terminal domain
ResIII	PF04851	280 - 437	9.6e-18	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	462 - 692	1.5e-114	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	512 - 614	5.6e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AatII	GACGTC	3 cut(s)	120, 546, 1807
AccB1I	GGYRCC	1 cut(s)	2183
AccII	CGCG	2 cut(s)	123, 2149
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	7 cut(s)	701, 1334, 1389, 1866, 2170, 2258, 2271
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	1339
AcuI	CTGAAG	6 cut(s)	497, 696, 769, 1179, 1443, 2267
AcyI	GRCGYC	3 cut(s)	117, 543, 1804
AfaI	GTAC	6 cut(s)	245, 314, 491, 1413, 1934, 2215
AfiI	CCNNNNNNNGG	3 cut(s)	511, 2015, 2193
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	9 cut(s)	169, 500, 523, 701, 757, 1468, 1693, 1800, 1941
Alw21I	GWGCWC	3 cut(s)	108, 895, 1230
Alw26I	GTCTC	4 cut(s)	221, 356, 2045, 2269
Alw44I	GTGCAC	1 cut(s)	1226
AlwI	GGATC	7 cut(s)	701, 1334, 1389, 1866, 2170, 2258, 2271
AlwNI	CAGNNNCTG	1 cut(s)	2021
Ama87I	CYCGRG	2 cut(s)	224, 1757
AoxI	GGCC	4 cut(s)	51, 84, 198, 293
ApaLI	GTGCAC	1 cut(s)	1226
ApeKI	GCWGC	5 cut(s)	575, 626, 665, 668, 975
ApoI	RAATTY	1 cut(s)	1339
ArsI	GACNNNNNNTTYG	6 cut(s)	313, 345, 361, 393, 1583, 1615
AsiGI	ACCGGT	1 cut(s)	283
Asp700I	GAANNNNTTC	3 cut(s)	63, 1092, 1448
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	198, 1352
AsuC2I	CCSGG	2 cut(s)	512, 1108
AsuHPI	GGTGA	4 cut(s)	143, 170, 1580, 2096
AsuII	TTCGAA	1 cut(s)	1252
AvaI	CYCGRG	2 cut(s)	224, 1757
AvaII	GGWCC	1 cut(s)	1352
BaeGI	GKGCMC	1 cut(s)	1230
BamHI	GGATCC	1 cut(s)	2263
BanI	GGYRCC	1 cut(s)	2183
BanII	GRGCYC	1 cut(s)	108
BarI	GAAGNNNNNNTAC	2 cut(s)	473, 505
BauI	CACGAG	2 cut(s)	308, 1907
Bbv12I	GWGCWC	3 cut(s)	108, 895, 1230
BbvI	GCAGC	5 cut(s)	562, 638, 655, 677, 962
BccI	CCATC	3 cut(s)	203, 1858, 2183
BceAI	ACGGC	3 cut(s)	454, 462, 472
BclI	TGATCA	3 cut(s)	175, 1009, 1966
BcnI	CCSGG	2 cut(s)	512, 1108
BcoDI	GTCTC	4 cut(s)	221, 356, 2045, 2269
BfaI	CTAG	4 cut(s)	30, 938, 986, 2111
BglII	AGATCT	2 cut(s)	1333, 1677
BmcAI	AGTACT	1 cut(s)	2215
Bme1390I	CCNGG	2 cut(s)	512, 1108
Bme18I	GGWCC	1 cut(s)	1352
BmeT110I	CYCGRG	2 cut(s)	224, 1757
BmgT120I	GGNCC	2 cut(s)	198, 1352
BmiI	GGNNCC	5 cut(s)	282, 442, 1354, 2185, 2265
BmrFI	CCNGG	2 cut(s)	512, 1108
BmsI	GCATC	2 cut(s)	294, 2080
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu10I	CCTNAGC	2 cut(s)	533, 1842
Bpu14I	TTCGAA	1 cut(s)	1252
BpuEI	CTTGAG	4 cut(s)	380, 809, 816, 886
BpuMI	CCSGG	2 cut(s)	512, 1108
BsaHI	GRCGYC	3 cut(s)	117, 543, 1804
BsaJI	CCNNGG	8 cut(s)	54, 121, 444, 570, 612, 1107, 1758, 2259
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 2015, 2193
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	4 cut(s)	636, 666, 1379, 2221
Bse3DI	GCAATG	1 cut(s)	1626
BseDI	CCNNGG	8 cut(s)	54, 121, 444, 570, 612, 1107, 1758, 2259
BseGI	GGATG	3 cut(s)	1225, 1324, 1869
BseLI	CCNNNNNNNGG	3 cut(s)	511, 2015, 2193
BseMI	GCAATG	1 cut(s)	1626
BseMII	CTCAG	3 cut(s)	547, 1256, 1826
BseNI	ACTGG	4 cut(s)	636, 666, 1379, 2221
BseRI	GAGGAG	3 cut(s)	116, 788, 1895
BseSI	GKGCMC	1 cut(s)	1230
BseXI	GCAGC	5 cut(s)	562, 638, 655, 677, 962
Bsh1236I	CGCG	2 cut(s)	123, 2149
BshFI	GGCC	4 cut(s)	53, 86, 200, 295
BshNI	GGYRCC	1 cut(s)	2183
BshTI	ACCGGT	1 cut(s)	283
BsiHKAI	GWGCWC	3 cut(s)	108, 895, 1230
BsiHKCI	CYCGRG	2 cut(s)	224, 1757
BsiSI	CCGG	4 cut(s)	284, 296, 512, 1107
BslFI	GGGAC	3 cut(s)	18, 551, 1338
BslI	CCNNNNNNNGG	3 cut(s)	511, 2015, 2193
BsmAI	GTCTC	4 cut(s)	221, 356, 2045, 2269
BsmBI	CGTCTC	2 cut(s)	356, 2045
BsmFI	GGGAC	3 cut(s)	18, 551, 1338
BsmI	GAATGC	2 cut(s)	328, 1892
BsnI	GGCC	4 cut(s)	53, 86, 200, 295
BsoBI	CYCGRG	2 cut(s)	224, 1757
Bsp119I	TTCGAA	1 cut(s)	1252
Bsp1286I	GDGCHC	3 cut(s)	108, 895, 1230
Bsp1407I	TGTACA	2 cut(s)	243, 1411
BspANI	GGCC	4 cut(s)	53, 86, 200, 295
BspCNI	CTCAG	3 cut(s)	546, 1255, 1827
BspFNI	CGCG	2 cut(s)	123, 2149
BspHI	TCATGA	1 cut(s)	1552
BspLI	GGNNCC	5 cut(s)	282, 442, 1354, 2185, 2265
BspPI	GGATC	7 cut(s)	701, 1334, 1389, 1866, 2170, 2258, 2271
BspT104I	TTCGAA	1 cut(s)	1252
BspT107I	GGYRCC	1 cut(s)	2183
BsrDI	GCAATG	1 cut(s)	1626
BsrFI	RCCGGY	1 cut(s)	283
BsrGI	TGTACA	2 cut(s)	243, 1411
BsrI	ACTGG	4 cut(s)	636, 666, 1379, 2221
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	8 cut(s)	54, 121, 444, 570, 612, 1107, 1758, 2259
BssNI	GRCGYC	3 cut(s)	117, 543, 1804
BssSI	CACGAG	2 cut(s)	308, 1907
BssT1I	CCWWGG	3 cut(s)	54, 612, 2259
Bst2BI	CACGAG	2 cut(s)	308, 1907
Bst4CI	ACNGT	7 cut(s)	131, 799, 1416, 1548, 1717, 1956, 2039
Bst6I	CTCTTC	1 cut(s)	2243
BstACI	GRCGYC	3 cut(s)	117, 543, 1804
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	2 cut(s)	243, 1411
BstBI	TTCGAA	1 cut(s)	1252
BstC8I	GCNNGC	7 cut(s)	202, 252, 293, 1286, 1494, 1531, 2000
BstDEI	CTNAG	9 cut(s)	156, 405, 533, 1242, 1681, 1835, 1842, 2067, 2101
BstDSI	CCRYGG	2 cut(s)	121, 444
BstENI	CCTNNNNNAGG	1 cut(s)	2013
BstF5I	GGATG	3 cut(s)	1225, 1324, 1869
BstFNI	CGCG	2 cut(s)	123, 2149
BstHHI	GCGC	1 cut(s)	206
BstMAI	GTCTC	4 cut(s)	221, 356, 2045, 2269
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 662, 671, 995
BstNSI	RCATGY	1 cut(s)	1793
BstSCI	CCNGG	2 cut(s)	510, 1106
BstSLI	GKGCMC	1 cut(s)	1230
BstUI	CGCG	2 cut(s)	123, 2149
BstV1I	GCAGC	5 cut(s)	562, 638, 655, 677, 962
BstX2I	RGATCY	5 cut(s)	1333, 1381, 1677, 2162, 2263
BstYI	RGATCY	5 cut(s)	1333, 1381, 1677, 2162, 2263
BsuRI	GGCC	4 cut(s)	53, 86, 200, 295
BtgI	CCRYGG	2 cut(s)	121, 444
BtgZI	GCGATG	2 cut(s)	253, 2189
BtsCI	GGATG	3 cut(s)	1225, 1324, 1869
BtsI	GCAGTG	1 cut(s)	1279
BtsIMutI	CAGTG	3 cut(s)	643, 1279, 1421
Cac8I	GCNNGC	7 cut(s)	202, 252, 293, 1286, 1494, 1531, 2000
CaiI	CAGNNNCTG	1 cut(s)	2021
CciI	TCATGA	1 cut(s)	1552
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	198, 1352
Cfr42I	CCGCGG	1 cut(s)	124
CseI	GACGC	3 cut(s)	373, 1808, 2138
Csp6I	GTAC	6 cut(s)	244, 313, 490, 1412, 1933, 2214
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	8 cut(s)	8, 766, 1132, 1216, 1553, 1661, 1790, 2203
CviQI	GTAC	6 cut(s)	244, 313, 490, 1412, 1933, 2214
DdeI	CTNAG	9 cut(s)	156, 405, 533, 1242, 1681, 1835, 1842, 2067, 2101
DraI	TTTAAA	2 cut(s)	1030, 2290
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	2243
EarI	CTCTTC	1 cut(s)	2243
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	3 cut(s)	54, 612, 2259
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	1782
Eco47I	GGWCC	1 cut(s)	1352
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	6 cut(s)	497, 696, 769, 1179, 1443, 2267
Eco88I	CYCGRG	2 cut(s)	224, 1757
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	2013
EcoRV	GATATC	1 cut(s)	1782
EcoT14I	CCWWGG	3 cut(s)	54, 612, 2259
EcoT22I	ATGCAT	1 cut(s)	1894
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	3 cut(s)	54, 612, 2259
Esp3I	CGTCTC	2 cut(s)	356, 2045
FaeI	CATG	8 cut(s)	11, 769, 1135, 1219, 1556, 1664, 1793, 2206
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 1436, 1468
FaqI	GGGAC	3 cut(s)	18, 551, 1338
FatI	CATG	8 cut(s)	7, 765, 1131, 1215, 1552, 1660, 1789, 2202
FbaI	TGATCA	3 cut(s)	175, 1009, 1966
FokI	GGATG	3 cut(s)	1232, 1331, 1876
FriOI	GRGCYC	1 cut(s)	108
FspBI	CTAG	4 cut(s)	30, 938, 986, 2111
GlaI	GCGC	1 cut(s)	205
HaeIII	GGCC	4 cut(s)	53, 86, 200, 295
HapII	CCGG	4 cut(s)	284, 296, 512, 1107
HgaI	GACGC	3 cut(s)	373, 1808, 2138
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	3 cut(s)	117, 543, 1804
Hin1II	CATG	8 cut(s)	11, 769, 1135, 1219, 1556, 1664, 1793, 2206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	4 cut(s)	802, 1041, 1914, 2076
HindII	GTYRAC	4 cut(s)	802, 1041, 1914, 2076
HindIII	AAGCTT	2 cut(s)	467, 1996
HinfI	GANTC	9 cut(s)	64, 184, 299, 484, 500, 632, 1163, 1510, 2012
HpaII	CCGG	4 cut(s)	284, 296, 512, 1107
HphI	GGTGA	4 cut(s)	143, 170, 1580, 2096
Hpy166II	GTNNAC	7 cut(s)	802, 1041, 1228, 1850, 1914, 2076, 2200
Hpy8I	GTNNAC	7 cut(s)	802, 1041, 1228, 1850, 1914, 2076, 2200
Hpy99I	CGWCG	7 cut(s)	52, 74, 95, 113, 131, 545, 2154
HpyAV	CCTTC	4 cut(s)	720, 1438, 1699, 2147
HpyCH4III	ACNGT	7 cut(s)	131, 799, 1416, 1548, 1717, 1956, 2039
HpyCH4IV	ACGT	9 cut(s)	90, 117, 495, 543, 736, 1230, 1564, 1707, 1804
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 662, 671, 995
HpyF3I	CTNAG	9 cut(s)	156, 405, 533, 1242, 1681, 1835, 1842, 2067, 2101
HpySE526I	ACGT	9 cut(s)	90, 117, 495, 543, 736, 1230, 1564, 1707, 1804
Hsp92I	GRCGYC	3 cut(s)	117, 543, 1804
Hsp92II	CATG	8 cut(s)	11, 769, 1135, 1219, 1556, 1664, 1793, 2206
HspAI	GCGC	1 cut(s)	204
Ksp22I	TGATCA	3 cut(s)	175, 1009, 1966
KspI	CCGCGG	1 cut(s)	124
LmnI	GCTCC	5 cut(s)	103, 414, 446, 1649, 2018
Lsp1109I	GCAGC	5 cut(s)	562, 638, 655, 677, 962
LweI	GCATC	2 cut(s)	294, 2080
MaeI	CTAG	4 cut(s)	30, 938, 986, 2111
MaeII	ACGT	9 cut(s)	90, 117, 495, 543, 736, 1230, 1564, 1707, 1804
MaeIII	GTNAC	2 cut(s)	912, 1117
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	5 cut(s)	1333, 1381, 1677, 2162, 2263
MhlI	GDGCHC	3 cut(s)	108, 895, 1230
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	750
Mph1103I	ATGCAT	1 cut(s)	1894
MroXI	GAANNNNTTC	3 cut(s)	63, 1092, 1448
MseI	TTAA	5 cut(s)	647, 1029, 1983, 2142, 2289
MslI	CAYNNNNRTG	1 cut(s)	908
MspA1I	CMGCKG	4 cut(s)	123, 193, 668, 2245
MspI	CCGG	4 cut(s)	284, 296, 512, 1107
MspR9I	CCNGG	2 cut(s)	512, 1108
MunI	CAATTG	1 cut(s)	273
Mva1269I	GAATGC	2 cut(s)	328, 1892
MvnI	CGCG	2 cut(s)	123, 2149
MwoI	GCNNNNNNNGC	4 cut(s)	59, 662, 671, 995
NciI	CCSGG	2 cut(s)	512, 1108
NlaIII	CATG	8 cut(s)	11, 769, 1135, 1219, 1556, 1664, 1793, 2206
NlaIV	GGNNCC	5 cut(s)	282, 442, 1354, 2185, 2265
NmeAIII	GCCGAG	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	1894
NspI	RCATGY	1 cut(s)	1793
NspV	TTCGAA	1 cut(s)	1252
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	1552
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	5 cut(s)	78, 87, 96, 114, 123
PctI	GAATGC	2 cut(s)	328, 1892
PdmI	GAANNNNTTC	3 cut(s)	63, 1092, 1448
PfeI	GAWTC	8 cut(s)	64, 184, 484, 500, 632, 1163, 1510, 2012
PflFI	GACNNNGTC	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	510
PinAI	ACCGGT	1 cut(s)	283
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	736
PspN4I	GGNNCC	5 cut(s)	282, 442, 1354, 2185, 2265
PspPI	GGNCC	2 cut(s)	198, 1352
PstNI	CAGNNNCTG	1 cut(s)	2021
PsuI	RGATCY	5 cut(s)	1333, 1381, 1677, 2162, 2263
PsyI	GACNNNGTC	1 cut(s)	542
PvuII	CAGCTG	2 cut(s)	668, 2245
RsaI	GTAC	6 cut(s)	245, 314, 491, 1413, 1934, 2215
RsaNI	GTAC	6 cut(s)	244, 313, 490, 1412, 1933, 2214
RseI	CAYNNNNRTG	1 cut(s)	908
SacI	GAGCTC	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	124
SaqAI	TTAA	5 cut(s)	647, 1029, 1983, 2142, 2289
Sau96I	GGNCC	2 cut(s)	198, 1352
ScaI	AGTACT	1 cut(s)	2215
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	2 cut(s)	512, 1108
SduI	GDGCHC	3 cut(s)	108, 895, 1230
SfaNI	GCATC	2 cut(s)	294, 2080
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	1252
SgrBI	CCGCGG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	1352
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	5 cut(s)	224, 359, 824, 831, 865
SmoI	CTYRAG	5 cut(s)	224, 359, 824, 831, 865
SseBI	AGGCCT	1 cut(s)	86
SspI	AATATT	2 cut(s)	219, 1463
SspMI	CTAG	4 cut(s)	30, 938, 986, 2111
SstI	GAGCTC	1 cut(s)	108
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	510, 1106
StyI	CCWWGG	3 cut(s)	54, 612, 2259
TaaI	ACNGT	7 cut(s)	131, 799, 1416, 1548, 1717, 1956, 2039
TaiI	ACGT	9 cut(s)	93, 120, 498, 546, 739, 1233, 1567, 1710, 1807
TaqI	TCGA	8 cut(s)	72, 81, 108, 225, 302, 1048, 1252, 2043
TatI	WGTACW	5 cut(s)	243, 312, 1411, 1932, 2213
TauI	GCSGC	5 cut(s)	99, 126, 344, 674, 956
TfiI	GAWTC	8 cut(s)	64, 184, 484, 500, 632, 1163, 1510, 2012
Tru1I	TTAA	5 cut(s)	647, 1029, 1983, 2142, 2289
Tru9I	TTAA	5 cut(s)	647, 1029, 1983, 2142, 2289
TscAI	CASTG	3 cut(s)	643, 1286, 1421
TseI	GCWGC	5 cut(s)	575, 626, 665, 668, 975
TspDTI	ATGAA	9 cut(s)	421, 597, 666, 1068, 1380, 1523, 1541, 1569, 1637
TspGWI	ACGGA	1 cut(s)	1625
TspRI	CASTG	3 cut(s)	643, 1286, 1421
Tth111I	GACNNNGTC	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	1226
VpaK11BI	GGWCC	1 cut(s)	1352
XagI	CCTNNNNNAGG	1 cut(s)	2013
XapI	RAATTY	1 cut(s)	1339
XceI	RCATGY	1 cut(s)	1793
XhoI	CTCGAG	1 cut(s)	224
XmnI	GAANNNNTTC	3 cut(s)	63, 1092, 1448
XspI	CTAG	4 cut(s)	30, 938, 986, 2111
ZraI	GACGTC	3 cut(s)	118, 544, 1805
ZrmI	AGTACT	1 cut(s)	2215
Zsp2I	ATGCAT	1 cut(s)	1894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.