Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

14350662 .. 14357721

Gene Structure 7060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG170500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1896 bp

ATGGGACATGGTGAGAAATCCCACCGACCCAGTAAAAAGCACAAATCGTCGGCCAAGGAAAGCATCCCCGTGGAGGACTACGAAGCCTACGTCGGCGGCGAAGAACTCGACGATGACGTTCGCGGCGACGGTGAAGTTAAAAAGAGGGATTTTACTAAGCTGGAATTGAAACCTGACCACGTGAATCGGCCTTTGTGGGCCTGCGCCGATGGTAGAATATTTCTCGAGACGTTCTCAGCTTTGTACAAGCAAGCCTATGATTTTCTCATTGCCATTGCGGAACCGGTTTGCAGGCCGGAGTCAATGCATGAGTACAACTTGACCCCGCATTCCTTGTATGCGGCCGTGTCTGTTGGTCTTGAAACCCAAACTATCATTTCGGTTTTGGATAAGCTGTCAAAGACCAAGCTCCCCAAAGAAATGATTGATTTCATACATGGTTCTACGGCTAATTACGGCAAAGTTAAGCTTGTGCTGAAGAAGAATCGGTATTATGTTGAATCCCCATTCCCAGAGGTATTGAAGAAATTGCTCAGGGATGACGTTATATCCAAATCAAGGATTATTCCTGAGGGTGCTAATGGAAATGGTGGATTTACAATTAGCAAAACCTTGGGCGAAATTGCAGCCGATTCCAGTGGTTTGCTAAATGAAGCAGAATTGGCAGCTGCGGCTGAAGAAAAAGAAACTCACGCATTTGAAATTGATCCTTCACAGGTTGAGAAAGTAAAAGAACGTTGTTTGCCAAACGCTTTGAACTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACGGTTAACCCTGATCTTGATATGGAACTCAAGCCTCAAGCGCAACCACGACCATATCAAGAGAAGAGCTTGAGTAAAATGTTTGGAAATGGGAGAGCACGATCTGGCATTATTGTGTTACCTTGTGGTGCTGGAAAATCTCTAGTTGGTGTTTCTGCAGCCTCCCGAATAAAAAAGAGCTGCCTTTGTCTAGCAACAAATGCTGTTTCTGTTGATCAATGGGCTTTTCAGTTTAAATTGTGGTCAACCATTCGAGATGAACACATTTGTCGTTTCACATCTGATAGCAAAGAAAGATTCCGCGGAAATGCTGGGGTGGTTGTGACAACATATAACATGGTTGCGTTTGGTGGCAAGAGGTCCGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTGCACGTTGTTCCTGCTCAGATGTTTCGAAAGGTTATCGCCATTACCAAATCACACTGCAAGCTTGGACTGACTGCCACGCTTGTGAGAGAGGATGAGAGGATCACAGATCTGAATTTCCTTATTGGTCCCAAATTGTATGAAGCAAACTGGCTGGATTTGGTAAAAGGTGGATTTATTGCAAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACGAAGGAGTTCTTTGCAGAATATTTGAAGAAAGAGAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAATCCGAATAAGTTTAGGGCTTGTGAGTTTCTTATACGGTTTCATGAACAGCAACGTGGTGATAAAATTATCGTCTTCGCTGACAATCTCTTTGCTCTCACGGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGAGCTACCAGCCATGTTGAGAGGACAAAGATCTTAGAAGCCTTCAAAACAAGTCGGGACGTAAATACTGTATTCTTGTCAAAGGTGGGAGATAATTCTATTGACATTCCTGAGGCAAATGTGATAATTCAGATATCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGTCGTATTCTGAGGGCCAAGGTTTGTTTTCATGCTGATATTCATATGGATGTAGTCCTTGCTTCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

631

Amino Acids

71.2

Weight (kDa)

8.26

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	65 - 187	1.5e-33	Helicase conserved C-terminal domain
ResIII	PF04851	280 - 437	8.1e-18	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	462 - 616	5.6e-83	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	512 - 614	9e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1807
AccII	CGCG	2 cut(s)	123, 1098
AciI	CCGC	8 cut(s)	96, 123, 278, 326, 341, 671, 1096, 1098
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	2 cut(s)	701, 1334
AcoI	YGGCCR	2 cut(s)	51, 342
AcsI	RAATTY	1 cut(s)	1339
AcuI	CTGAAG	4 cut(s)	497, 696, 769, 1443
AcvI	CACGTG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	1804
AfaI	GTAC	3 cut(s)	245, 314, 1413
AfiI	CCNNNNNNNGG	2 cut(s)	73, 558
AgeI	ACCGGT	1 cut(s)	283
AleI	CACNNNNGTG	1 cut(s)	1307
Alw21I	GWGCWC	2 cut(s)	895, 1230
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	1226
AlwI	GGATC	2 cut(s)	701, 1334
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	6 cut(s)	51, 188, 198, 293, 342, 1839
ApaLI	GTGCAC	1 cut(s)	1226
ApeKI	GCWGC	5 cut(s)	626, 665, 668, 953, 975
ApoI	RAATTY	1 cut(s)	1339
ArsI	GACNNNNNNTTYG	4 cut(s)	75, 107, 1583, 1615
AsiGI	ACCGGT	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	1448
AspLEI	GCGC	2 cut(s)	206, 838
AspS9I	GGNCC	4 cut(s)	198, 1155, 1352, 1839
AsuHPI	GGTGA	3 cut(s)	23, 143, 1580
AsuII	TTCGAA	1 cut(s)	1252
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	1155, 1352
AxyI	CCTNAGG	2 cut(s)	570, 1758
BaeGI	GKGCMC	1 cut(s)	1230
BbrPI	CACGTG	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	1576
Bbv12I	GWGCWC	2 cut(s)	895, 1230
BbvI	GCAGC	5 cut(s)	638, 655, 677, 962, 965
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	3 cut(s)	329, 462, 472
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	938, 986
BfmI	CTRYAG	1 cut(s)	951
BglII	AGATCT	2 cut(s)	1333, 1677
BisI	GCNGC	9 cut(s)	97, 124, 342, 627, 666, 669, 672, 954, 976
BlsI	GCNGC	9 cut(s)	98, 125, 343, 628, 667, 670, 673, 955, 977
Bme18I	GGWCC	2 cut(s)	1155, 1352
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	198, 1155, 1352, 1839
BmiI	GGNNCC	2 cut(s)	282, 1354
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	1576
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
Bpu10I	CCTNAGC	1 cut(s)	533
Bpu14I	TTCGAA	1 cut(s)	1252
BpuEI	CTTGAG	3 cut(s)	809, 816, 886
BsaAI	YACGTR	1 cut(s)	181
BsaHI	GRCGYC	1 cut(s)	1804
BsaJI	CCNNGG	5 cut(s)	54, 69, 612, 1096, 1842
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 558
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	3 cut(s)	30, 636, 1379
Bse21I	CCTNAGG	2 cut(s)	570, 1758
Bse3DI	GCAATG	3 cut(s)	267, 273, 1626
BseDI	CCNNGG	5 cut(s)	54, 69, 612, 1096, 1842
BseGI	GGATG	5 cut(s)	63, 544, 1225, 1324, 1879
BseLI	CCNNNNNNNGG	2 cut(s)	73, 558
BseMI	GCAATG	3 cut(s)	267, 273, 1626
BseMII	CTCAG	6 cut(s)	249, 547, 561, 1256, 1749, 1826
BseNI	ACTGG	3 cut(s)	30, 636, 1379
BseRI	GAGGAG	1 cut(s)	788
BseSI	GKGCMC	1 cut(s)	1230
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	5 cut(s)	638, 655, 677, 962, 965
BseYI	CCCAGC	1 cut(s)	1106
Bsh1236I	CGCG	2 cut(s)	123, 1098
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	6 cut(s)	53, 190, 200, 295, 344, 1841
BshTI	ACCGGT	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	2 cut(s)	895, 1230
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	284, 296
BslFI	GGGAC	3 cut(s)	18, 1338, 1718
BslI	CCNNNNNNNGG	2 cut(s)	73, 558
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
BsmFI	GGGAC	3 cut(s)	18, 1338, 1718
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	6 cut(s)	53, 190, 200, 295, 344, 1841
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	1252
Bsp1286I	GDGCHC	2 cut(s)	895, 1230
Bsp1407I	TGTACA	2 cut(s)	243, 1411
Bsp143I	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
BspACI	CCGC	8 cut(s)	96, 123, 278, 326, 341, 671, 1096, 1098
BspANI	GGCC	6 cut(s)	53, 190, 200, 295, 344, 1841
BspCNI	CTCAG	6 cut(s)	248, 546, 562, 1255, 1750, 1827
BspFNI	CGCG	2 cut(s)	123, 1098
BspHI	TCATGA	1 cut(s)	1552
BspLI	GGNNCC	2 cut(s)	282, 1354
BspMAI	CTGCAG	1 cut(s)	955
BspPI	GGATC	2 cut(s)	701, 1334
BspQI	GCTCTTC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	1252
BsrDI	GCAATG	3 cut(s)	267, 273, 1626
BsrFI	RCCGGY	1 cut(s)	283
BsrGI	TGTACA	2 cut(s)	243, 1411
BsrI	ACTGG	3 cut(s)	30, 636, 1379
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	5 cut(s)	54, 69, 612, 1096, 1842
BssMI	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
BssNI	GRCGYC	1 cut(s)	1804
BssT1I	CCWWGG	3 cut(s)	54, 612, 1842
Bst4CI	ACNGT	5 cut(s)	131, 799, 1416, 1548, 1717
Bst6I	CTCTTC	1 cut(s)	854
BstACI	GRCGYC	1 cut(s)	1804
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstAUI	TGTACA	2 cut(s)	243, 1411
BstBAI	YACGTR	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	1252
BstC8I	GCNNGC	5 cut(s)	202, 252, 293, 1286, 1494
BstDEI	CTNAG	8 cut(s)	156, 235, 533, 570, 1242, 1681, 1758, 1835
BstDSI	CCRYGG	2 cut(s)	69, 1096
BstF5I	GGATG	5 cut(s)	63, 544, 1225, 1324, 1879
BstFNI	CGCG	2 cut(s)	123, 1098
BstHHI	GCGC	2 cut(s)	206, 838
BstKTI	GATC	8 cut(s)	709, 811, 899, 1012, 1329, 1336, 1644, 1680
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	662, 671, 835, 995
BstNSI	RCATGY	1 cut(s)	1793
BstSFI	CTRYAG	1 cut(s)	951
BstSLI	GKGCMC	1 cut(s)	1230
BstUI	CGCG	2 cut(s)	123, 1098
BstV1I	GCAGC	5 cut(s)	638, 655, 677, 962, 965
BstV2I	GAAGAC	1 cut(s)	1576
BstX2I	RGATCY	2 cut(s)	1333, 1677
BstYI	RGATCY	2 cut(s)	1333, 1677
BstZI	CGGCCG	1 cut(s)	342
Bsu36I	CCTNAGG	2 cut(s)	570, 1758
BsuRI	GGCC	6 cut(s)	53, 190, 200, 295, 344, 1841
BtgI	CCRYGG	2 cut(s)	69, 1096
BtsCI	GGATG	5 cut(s)	63, 544, 1225, 1324, 1879
BtsI	GCAGTG	1 cut(s)	1279
BtsIMutI	CAGTG	3 cut(s)	643, 1279, 1421
Cac8I	GCNNGC	5 cut(s)	202, 252, 293, 1286, 1494
CciI	TCATGA	1 cut(s)	1552
CfoI	GCGC	2 cut(s)	206, 838
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	4 cut(s)	198, 1155, 1352, 1839
Cfr42I	CCGCGG	1 cut(s)	1099
CseI	GACGC	1 cut(s)	1808
Csp6I	GTAC	3 cut(s)	244, 313, 1412
CspAI	ACCGGT	1 cut(s)	283
CviQI	GTAC	3 cut(s)	244, 313, 1412
DdeI	CTNAG	8 cut(s)	156, 235, 533, 570, 1242, 1681, 1758, 1835
DpnI	GATC	8 cut(s)	708, 810, 898, 1011, 1328, 1335, 1643, 1679
DpnII	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
DraI	TTTAAA	1 cut(s)	1030
EaeI	YGGCCR	2 cut(s)	51, 342
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
EclXI	CGGCCG	1 cut(s)	342
Eco130I	CCWWGG	3 cut(s)	54, 612, 1842
Eco32I	GATATC	1 cut(s)	1782
Eco47I	GGWCC	2 cut(s)	1155, 1352
Eco52I	CGGCCG	1 cut(s)	342
Eco57I	CTGAAG	4 cut(s)	497, 696, 769, 1443
Eco72I	CACGTG	1 cut(s)	181
Eco81I	CCTNAGG	2 cut(s)	570, 1758
Eco88I	CYCGRG	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	1782
EcoT14I	CCWWGG	3 cut(s)	54, 612, 1842
EcoT22I	ATGCAT	1 cut(s)	309
ErhI	CCWWGG	3 cut(s)	54, 612, 1842
Esp3I	CGTCTC	1 cut(s)	221
FalI	AAGNNNNNCTT	4 cut(s)	453, 485, 1436, 1468
FaqI	GGGAC	3 cut(s)	18, 1338, 1718
FauI	CCCGC	1 cut(s)	333
FauNDI	CATATG	1 cut(s)	1869
FbaI	TGATCA	1 cut(s)	1009
Fnu4HI	GCNGC	9 cut(s)	97, 124, 342, 627, 666, 669, 672, 954, 976
FokI	GGATG	5 cut(s)	50, 551, 1232, 1331, 1886
Fsp4HI	GCNGC	9 cut(s)	97, 124, 342, 627, 666, 669, 672, 954, 976
FspBI	CTAG	2 cut(s)	938, 986
GlaI	GCGC	2 cut(s)	205, 837
GluI	GCNGC	9 cut(s)	97, 124, 342, 627, 666, 669, 672, 954, 976
GsaI	CCCAGC	1 cut(s)	1110
HaeIII	GGCC	6 cut(s)	53, 190, 200, 295, 344, 1841
HapII	CCGG	2 cut(s)	284, 296
HgaI	GACGC	1 cut(s)	1808
HhaI	GCGC	2 cut(s)	206, 838
Hin1I	GRCGYC	1 cut(s)	1804
Hin6I	GCGC	2 cut(s)	204, 836
HinP1I	GCGC	2 cut(s)	204, 836
HincII	GTYRAC	2 cut(s)	802, 1041
HindII	GTYRAC	2 cut(s)	802, 1041
HindIII	AAGCTT	2 cut(s)	467, 1286
HinfI	GANTC	8 cut(s)	184, 299, 484, 500, 632, 1092, 1163, 1510
HpaI	GTTAAC	1 cut(s)	802
HpaII	CCGG	2 cut(s)	284, 296
HphI	GGTGA	3 cut(s)	23, 143, 1580
Hpy166II	GTNNAC	3 cut(s)	802, 1041, 1228
Hpy8I	GTNNAC	3 cut(s)	802, 1041, 1228
Hpy99I	CGWCG	4 cut(s)	52, 95, 113, 131
HpyAV	CCTTC	3 cut(s)	720, 1438, 1699
HpyCH4III	ACNGT	5 cut(s)	131, 799, 1416, 1548, 1717
HpyCH4V	TGCA	9 cut(s)	291, 307, 626, 953, 1228, 1284, 1406, 1457, 1619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	662, 671, 835, 995
HpyF3I	CTNAG	8 cut(s)	156, 235, 533, 570, 1242, 1681, 1758, 1835
Hsp92I	GRCGYC	1 cut(s)	1804
HspAI	GCGC	2 cut(s)	204, 836
Ksp22I	TGATCA	1 cut(s)	1009
KspAI	GTTAAC	1 cut(s)	802
KspI	CCGCGG	1 cut(s)	1099
Kzo9I	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	2 cut(s)	414, 1649
Lsp1109I	GCAGC	5 cut(s)	638, 655, 677, 962, 965
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	938, 986
MaeIII	GTNAC	2 cut(s)	912, 1117
MalI	GATC	8 cut(s)	708, 810, 898, 1011, 1328, 1335, 1643, 1679
MboI	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
MflI	RGATCY	2 cut(s)	1333, 1677
MhlI	GDGCHC	2 cut(s)	895, 1230
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	750
Mph1103I	ATGCAT	1 cut(s)	309
MroXI	GAANNNNTTC	1 cut(s)	1448
MseI	TTAA	4 cut(s)	138, 465, 801, 1029
MslI	CAYNNNNRTG	4 cut(s)	68, 908, 1307, 1872
MspA1I	CMGCKG	2 cut(s)	668, 1098
MspI	CCGG	2 cut(s)	284, 296
Mva1269I	GAATGC	1 cut(s)	328
MvnI	CGCG	2 cut(s)	123, 1098
MwoI	GCNNNNNNNGC	4 cut(s)	662, 671, 835, 995
NdeI	CATATG	1 cut(s)	1869
NdeII	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
NlaIV	GGNNCC	2 cut(s)	282, 1354
NmuCI	GTSAC	1 cut(s)	1117
NsiI	ATGCAT	1 cut(s)	309
NspI	RCATGY	1 cut(s)	1793
NspV	TTCGAA	1 cut(s)	1252
OliI	CACNNNNGTG	1 cut(s)	1307
PaeR7I	CTCGAG	1 cut(s)	224
PagI	TCATGA	1 cut(s)	1552
PciSI	GCTCTTC	1 cut(s)	854
PcsI	WCGNNNNNNNCGW	4 cut(s)	87, 96, 114, 123
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	1448
PfeI	GAWTC	7 cut(s)	184, 484, 500, 632, 1092, 1163, 1510
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	9 cut(s)	98, 125, 343, 628, 667, 670, 673, 955, 977
PleI	GAGTC	1 cut(s)	307
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	181
Psp1406I	AACGTT	1 cut(s)	736
PspCI	CACGTG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	1106
PspN4I	GGNNCC	2 cut(s)	282, 1354
PspPI	GGNCC	4 cut(s)	198, 1155, 1352, 1839
PstI	CTGCAG	1 cut(s)	955
PsuI	RGATCY	2 cut(s)	1333, 1677
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	245, 314, 1413
RsaNI	GTAC	3 cut(s)	244, 313, 1412
RseI	CAYNNNNRTG	4 cut(s)	68, 908, 1307, 1872
SacII	CCGCGG	1 cut(s)	1099
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	4 cut(s)	138, 465, 801, 1029
SatI	GCNGC	9 cut(s)	97, 124, 342, 627, 666, 669, 672, 954, 976
Sau3AI	GATC	8 cut(s)	706, 808, 896, 1009, 1326, 1333, 1641, 1677
Sau96I	GGNCC	4 cut(s)	198, 1155, 1352, 1839
SchI	GAGTC	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	895, 1230
SfaNI	GCATC	1 cut(s)	72
SfcI	CTRYAG	1 cut(s)	951
Sfr274I	CTCGAG	1 cut(s)	224
Sfr303I	CCGCGG	1 cut(s)	1099
SfuI	TTCGAA	1 cut(s)	1252
SgrBI	CCGCGG	1 cut(s)	1099
SinI	GGWCC	2 cut(s)	1155, 1352
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	4 cut(s)	68, 908, 1307, 1872
SmlI	CTYRAG	4 cut(s)	224, 824, 831, 865
SmoI	CTYRAG	4 cut(s)	224, 824, 831, 865
SsiI	CCGC	8 cut(s)	96, 123, 278, 326, 341, 671, 1096, 1098
SspI	AATATT	2 cut(s)	219, 1463
SspMI	CTAG	2 cut(s)	938, 986
StyI	CCWWGG	3 cut(s)	54, 612, 1842
TaaI	ACNGT	5 cut(s)	131, 799, 1416, 1548, 1717
TaqI	TCGA	4 cut(s)	108, 225, 1048, 1252
TatI	WGTACW	3 cut(s)	243, 312, 1411
TauI	GCSGC	4 cut(s)	99, 126, 344, 674
TfiI	GAWTC	7 cut(s)	184, 484, 500, 632, 1092, 1163, 1510
Tru1I	TTAA	4 cut(s)	138, 465, 801, 1029
Tru9I	TTAA	4 cut(s)	138, 465, 801, 1029
TscAI	CASTG	3 cut(s)	643, 1286, 1421
TseFI	GTSAC	1 cut(s)	1117
TseI	GCWGC	5 cut(s)	626, 665, 668, 953, 975
Tsp45I	GTSAC	1 cut(s)	1117
TspGWI	ACGGA	1 cut(s)	1625
TspRI	CASTG	3 cut(s)	643, 1286, 1421
VneI	GTGCAC	1 cut(s)	1226
VpaK11BI	GGWCC	2 cut(s)	1155, 1352
XapI	RAATTY	1 cut(s)	1339
XceI	RCATGY	1 cut(s)	1793
XhoI	CTCGAG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	1448
XspI	CTAG	2 cut(s)	938, 986
ZraI	GACGTC	1 cut(s)	1805
Zsp2I	ATGCAT	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.