a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Helicase_C_3 | PF13625 | 66 - 189 | 3.7e-34 | Helicase conserved C-terminal domain |
| ResIII | PF04851 | 281 - 438 | 3.2e-18 | Type III restriction enzyme, res subunit |
| ERCC3_RAD25_C | PF16203 | 463 - 709 | 2.6e-116 | ERCC3/RAD25/XPB C-terminal helicase |
| Helicase_C | PF00271 | 513 - 615 | 4.9e-13 | Helicase conserved C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 551, 1994 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2096 |
| AatII | GACGTC | 1 cut(s) | 1810 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 182, 584 |
| AccI | GTMKAC | 2 cut(s) | 1043, 2202 |
| AccII | CGCG | 1 cut(s) | 2018 |
| AccIII | TCCGGA | 2 cut(s) | 1632, 2011 |
| AciI | CCGC | 4 cut(s) | 588, 618, 659, 2018 |
| AclI | AACGTT | 1 cut(s) | 2293 |
| AclWI | GGATC | 2 cut(s) | 1020, 2173 |
| AcoI | YGGCCR | 1 cut(s) | 1869 |
| AcsI | RAATTY | 2 cut(s) | 662, 1680 |
| AcuI | CTGAAG | 5 cut(s) | 108, 772, 848, 1446, 1782 |
| AcyI | GRCGYC | 1 cut(s) | 1807 |
| AfaI | GTAC | 1 cut(s) | 1889 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| AflIII | ACRYGT | 1 cut(s) | 2298 |
| AjiI | CACGTC | 1 cut(s) | 1711 |
| AjnI | CCWGG | 1 cut(s) | 855 |
| AleI | CACNNNNGTG | 1 cut(s) | 1310 |
| Alw26I | GTCTC | 6 cut(s) | 224, 359, 1009, 2064, 2082, 2146 |
| AlwI | GGATC | 2 cut(s) | 1020, 2173 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1533 |
| Ama87I | CYCGRG | 2 cut(s) | 638, 1685 |
| Aor13HI | TCCGGA | 2 cut(s) | 1632, 2011 |
| AoxI | GGCC | 7 cut(s) | 191, 296, 848, 1020, 1354, 1869, 2221 |
| ApeKI | GCWGC | 7 cut(s) | 344, 668, 671, 674, 736, 956, 959 |
| ApoI | RAATTY | 2 cut(s) | 662, 1680 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1586, 1618 |
| AspLEI | GCGC | 1 cut(s) | 1609 |
| AspS9I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| AsuC2I | CCSGG | 2 cut(s) | 639, 640 |
| AsuHPI | GGTGA | 6 cut(s) | 23, 140, 602, 632, 1751, 2086 |
| AvaI | CYCGRG | 2 cut(s) | 638, 1685 |
| AvaII | GGWCC | 1 cut(s) | 635 |
| BauI | CACGAG | 2 cut(s) | 120, 311 |
| BbsI | GAAGAC | 5 cut(s) | 28, 120, 1326, 1714, 2127 |
| BbvI | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 946, 968 |
| BccI | CCATC | 3 cut(s) | 119, 206, 587 |
| BceAI | ACGGC | 1 cut(s) | 2208 |
| BciT130I | CCWGG | 1 cut(s) | 857 |
| BclI | TGATCA | 1 cut(s) | 58 |
| BcnI | CCSGG | 2 cut(s) | 639, 640 |
| BcoDI | GTCTC | 6 cut(s) | 224, 359, 1009, 2064, 2082, 2146 |
| BfaI | CTAG | 5 cut(s) | 561, 941, 1292, 1382, 1803 |
| BfmI | CTRYAG | 1 cut(s) | 954 |
| BglII | AGATCT | 1 cut(s) | 899 |
| BisI | GCNGC | 7 cut(s) | 345, 669, 672, 675, 737, 957, 960 |
| BlpI | GCTNAGC | 1 cut(s) | 1818 |
| BlsI | GCNGC | 7 cut(s) | 346, 670, 673, 676, 738, 958, 961 |
| Bme1390I | CCNGG | 3 cut(s) | 639, 640, 857 |
| Bme18I | GGWCC | 1 cut(s) | 635 |
| BmeT110I | CYCGRG | 2 cut(s) | 638, 1685 |
| BmgBI | CACGTC | 1 cut(s) | 1711 |
| BmgT120I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| BmiI | GGNNCC | 2 cut(s) | 637, 1239 |
| BmrFI | CCNGG | 3 cut(s) | 639, 640, 857 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 5 cut(s) | 28, 120, 1326, 1714, 2127 |
| BpmI | CTGGAG | 1 cut(s) | 2106 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1845 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1818 |
| BpuEI | CTTGAG | 2 cut(s) | 383, 2050 |
| BpuMI | CCSGG | 2 cut(s) | 639, 640 |
| Bsa29I | ATCGAT | 1 cut(s) | 2168 |
| BsaAI | YACGTR | 1 cut(s) | 2299 |
| BsaHI | GRCGYC | 1 cut(s) | 1807 |
| BsaJI | CCNNGG | 6 cut(s) | 417, 638, 639, 845, 1099, 1972 |
| BsaWI | WCCGGW | 4 cut(s) | 1632, 2011, 2183, 2234 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 223, 253 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| Bse118I | RCCGGY | 1 cut(s) | 1871 |
| Bse1I | ACTGG | 3 cut(s) | 1027, 1659, 1701 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseAI | TCCGGA | 2 cut(s) | 1632, 2011 |
| BseBI | CCWGG | 1 cut(s) | 857 |
| BseCI | ATCGAT | 1 cut(s) | 2168 |
| BseDI | CCNNGG | 6 cut(s) | 417, 638, 639, 845, 1099, 1972 |
| BseGI | GGATG | 4 cut(s) | 61, 75, 435, 1228 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 7 cut(s) | 291, 550, 564, 1020, 1152, 1832, 2232 |
| BseNI | ACTGG | 3 cut(s) | 1027, 1659, 1701 |
| BseRI | GAGGAG | 2 cut(s) | 152, 231 |
| BseXI | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 946, 968 |
| BsgI | GTGCAG | 1 cut(s) | 699 |
| Bsh1236I | CGCG | 1 cut(s) | 2018 |
| Bsh1285I | CGRYCG | 1 cut(s) | 606 |
| BshFI | GGCC | 7 cut(s) | 193, 298, 850, 1022, 1356, 1871, 2223 |
| BshVI | ATCGAT | 1 cut(s) | 2168 |
| BsiEI | CGRYCG | 1 cut(s) | 606 |
| BsiHKCI | CYCGRG | 2 cut(s) | 638, 1685 |
| BsiSI | CCGG | 6 cut(s) | 639, 1633, 1872, 2012, 2184, 2235 |
| BslFI | GGGAC | 2 cut(s) | 490, 1422 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 182, 294, 584, 718, 1732, 2011, 2018 |
| BsmAI | GTCTC | 6 cut(s) | 224, 359, 1009, 2064, 2082, 2146 |
| BsmBI | CGTCTC | 2 cut(s) | 2082, 2146 |
| BsmFI | GGGAC | 2 cut(s) | 490, 1422 |
| BsmI | GAATGC | 3 cut(s) | 1003, 1895, 2086 |
| BsnI | GGCC | 7 cut(s) | 193, 298, 850, 1022, 1356, 1871, 2223 |
| BsoBI | CYCGRG | 2 cut(s) | 638, 1685 |
| Bsp13I | TCCGGA | 2 cut(s) | 1632, 2011 |
| Bsp143I | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1818 |
| BspACI | CCGC | 4 cut(s) | 588, 618, 659, 2018 |
| BspANI | GGCC | 7 cut(s) | 193, 298, 850, 1022, 1356, 1871, 2223 |
| BspCNI | CTCAG | 7 cut(s) | 292, 549, 565, 1019, 1153, 1831, 2231 |
| BspDI | ATCGAT | 1 cut(s) | 2168 |
| BspEI | TCCGGA | 2 cut(s) | 1632, 2011 |
| BspFNI | CGCG | 1 cut(s) | 2018 |
| BspHI | TCATGA | 1 cut(s) | 1509 |
| BspLI | GGNNCC | 2 cut(s) | 637, 1239 |
| BspMAI | CTGCAG | 1 cut(s) | 958 |
| BspPI | GGATC | 2 cut(s) | 1020, 2173 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BsrFI | RCCGGY | 1 cut(s) | 1871 |
| BsrI | ACTGG | 3 cut(s) | 1027, 1659, 1701 |
| BssAI | RCCGGY | 1 cut(s) | 1871 |
| BssECI | CCNNGG | 6 cut(s) | 417, 638, 639, 845, 1099, 1972 |
| BssMI | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| BssNI | GRCGYC | 1 cut(s) | 1807 |
| BssSI | CACGAG | 2 cut(s) | 120, 311 |
| BssT1I | CCWWGG | 2 cut(s) | 417, 1972 |
| Bst2BI | CACGAG | 2 cut(s) | 120, 311 |
| Bst2UI | CCWGG | 1 cut(s) | 857 |
| Bst4CI | ACNGT | 6 cut(s) | 11, 399, 1158, 1720, 1959, 2055 |
| Bst6I | CTCTTC | 6 cut(s) | 140, 675, 968, 1878, 2067, 2288 |
| BstACI | GRCGYC | 1 cut(s) | 1807 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 615 |
| BstBAI | YACGTR | 1 cut(s) | 2299 |
| BstC8I | GCNNGC | 4 cut(s) | 296, 894, 1289, 1497 |
| BstDSI | CCRYGG | 1 cut(s) | 1099 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1730 |
| BstF5I | GGATG | 4 cut(s) | 61, 75, 435, 1228 |
| BstFNI | CGCG | 1 cut(s) | 2018 |
| BstHHI | GCGC | 1 cut(s) | 1609 |
| BstKTI | GATC | 7 cut(s) | 61, 181, 814, 902, 1015, 2095, 2168 |
| BstMAI | GTCTC | 6 cut(s) | 224, 359, 1009, 2064, 2082, 2146 |
| BstMBI | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| BstMCI | CGRYCG | 1 cut(s) | 606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 449, 615, 665, 674, 998 |
| BstNI | CCWGG | 1 cut(s) | 857 |
| BstNSI | RCATGY | 3 cut(s) | 618, 1235, 1796 |
| BstSCI | CCNGG | 3 cut(s) | 637, 638, 855 |
| BstSFI | CTRYAG | 1 cut(s) | 954 |
| BstUI | CGCG | 1 cut(s) | 2018 |
| BstV1I | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 946, 968 |
| BstV2I | GAAGAC | 5 cut(s) | 28, 120, 1326, 1714, 2127 |
| BstX2I | RGATCY | 1 cut(s) | 899 |
| BstYI | RGATCY | 1 cut(s) | 899 |
| Bsu15I | ATCGAT | 1 cut(s) | 2168 |
| BsuRI | GGCC | 7 cut(s) | 193, 298, 850, 1022, 1356, 1871, 2223 |
| BsuTUI | ATCGAT | 1 cut(s) | 2168 |
| BtgI | CCRYGG | 1 cut(s) | 1099 |
| BtgZI | GCGATG | 1 cut(s) | 1637 |
| BtrI | CACGTC | 1 cut(s) | 1711 |
| BtsCI | GGATG | 4 cut(s) | 61, 75, 435, 1228 |
| BtsI | GCAGTG | 1 cut(s) | 1282 |
| BtsIMutI | CAGTG | 5 cut(s) | 1014, 1022, 1282, 1424, 1716 |
| Cac8I | GCNNGC | 4 cut(s) | 296, 894, 1289, 1497 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1533 |
| CciI | TCATGA | 1 cut(s) | 1509 |
| CfoI | GCGC | 1 cut(s) | 1609 |
| Cfr10I | RCCGGY | 1 cut(s) | 1871 |
| Cfr13I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| Cfr9I | CCCGGG | 1 cut(s) | 638 |
| ClaI | ATCGAT | 1 cut(s) | 2168 |
| CseI | GACGC | 1 cut(s) | 2024 |
| Csp6I | GTAC | 1 cut(s) | 1888 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 318, 353 |
| CviQI | GTAC | 1 cut(s) | 1888 |
| DpnI | GATC | 7 cut(s) | 60, 180, 813, 901, 1014, 2094, 2167 |
| DpnII | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| DraI | TTTAAA | 1 cut(s) | 1696 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2096 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2096 |
| EaeI | YGGCCR | 1 cut(s) | 1869 |
| Eam1104I | CTCTTC | 6 cut(s) | 140, 675, 968, 1878, 2067, 2288 |
| EarI | CTCTTC | 6 cut(s) | 140, 675, 968, 1878, 2067, 2288 |
| Eco130I | CCWWGG | 2 cut(s) | 417, 1972 |
| Eco147I | AGGCCT | 2 cut(s) | 193, 298 |
| Eco32I | GATATC | 1 cut(s) | 1756 |
| Eco47I | GGWCC | 1 cut(s) | 635 |
| Eco57I | CTGAAG | 5 cut(s) | 108, 772, 848, 1446, 1782 |
| Eco88I | CYCGRG | 2 cut(s) | 638, 1685 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1730 |
| EcoO109I | RGGNCCY | 1 cut(s) | 635 |
| EcoRII | CCWGG | 1 cut(s) | 855 |
| EcoRV | GATATC | 1 cut(s) | 1756 |
| EcoT14I | CCWWGG | 2 cut(s) | 417, 1972 |
| EcoT22I | ATGCAT | 1 cut(s) | 1897 |
| ErhI | CCWWGG | 2 cut(s) | 417, 1972 |
| Esp3I | CGTCTC | 2 cut(s) | 2082, 2146 |
| FaqI | GGGAC | 2 cut(s) | 490, 1422 |
| FauI | CCCGC | 1 cut(s) | 2011 |
| FauNDI | CATATG | 1 cut(s) | 1248 |
| FbaI | TGATCA | 1 cut(s) | 58 |
| FblI | GTMKAC | 2 cut(s) | 1043, 2202 |
| Fnu4HI | GCNGC | 7 cut(s) | 345, 669, 672, 675, 737, 957, 960 |
| FokI | GGATG | 4 cut(s) | 62, 68, 422, 1235 |
| Fsp4HI | GCNGC | 7 cut(s) | 345, 669, 672, 675, 737, 957, 960 |
| FspBI | CTAG | 5 cut(s) | 561, 941, 1292, 1382, 1803 |
| GlaI | GCGC | 1 cut(s) | 1608 |
| GluI | GCNGC | 7 cut(s) | 345, 669, 672, 675, 737, 957, 960 |
| GsuI | CTGGAG | 1 cut(s) | 2106 |
| HaeIII | GGCC | 7 cut(s) | 193, 298, 850, 1022, 1356, 1871, 2223 |
| HapII | CCGG | 6 cut(s) | 639, 1633, 1872, 2012, 2184, 2235 |
| HgaI | GACGC | 1 cut(s) | 2024 |
| HhaI | GCGC | 1 cut(s) | 1609 |
| Hin1I | GRCGYC | 1 cut(s) | 1807 |
| Hin6I | GCGC | 1 cut(s) | 1607 |
| HinP1I | GCGC | 1 cut(s) | 1607 |
| HindIII | AAGCTT | 2 cut(s) | 255, 2026 |
| HinfI | GANTC | 8 cut(s) | 116, 302, 487, 503, 597, 1095, 1166, 1546 |
| HpaII | CCGG | 6 cut(s) | 639, 1633, 1872, 2012, 2184, 2235 |
| HphI | GGTGA | 6 cut(s) | 23, 140, 602, 632, 1751, 2086 |
| Hpy166II | GTNNAC | 6 cut(s) | 623, 1044, 1154, 1714, 1853, 2203 |
| Hpy188I | TCNGA | 6 cut(s) | 574, 1081, 1162, 1171, 1529, 1545 |
| Hpy8I | GTNNAC | 6 cut(s) | 623, 1044, 1154, 1714, 1853, 2203 |
| Hpy99I | CGWCG | 3 cut(s) | 545, 997, 1948 |
| HpyAV | CCTTC | 3 cut(s) | 125, 210, 1033 |
| HpyCH4III | ACNGT | 6 cut(s) | 11, 399, 1158, 1720, 1959, 2055 |
| HpyCH4IV | ACGT | 5 cut(s) | 1567, 1710, 1807, 2293, 2298 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 449, 615, 665, 674, 998 |
| HpySE526I | ACGT | 5 cut(s) | 1567, 1710, 1807, 2293, 2298 |
| Hsp92I | GRCGYC | 1 cut(s) | 1807 |
| HspAI | GCGC | 1 cut(s) | 1607 |
| Kpn2I | TCCGGA | 2 cut(s) | 1632, 2011 |
| Ksp22I | TGATCA | 1 cut(s) | 58 |
| Kzo9I | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| LmnI | GCTCC | 1 cut(s) | 643 |
| Lsp1109I | GCAGC | 7 cut(s) | 331, 680, 683, 686, 748, 946, 968 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 5 cut(s) | 561, 941, 1292, 1382, 1803 |
| MaeII | ACGT | 5 cut(s) | 1567, 1710, 1807, 2293, 2298 |
| MaeIII | GTNAC | 6 cut(s) | 1120, 1209, 1788, 1976, 2225, 2294 |
| MalI | GATC | 7 cut(s) | 60, 180, 813, 901, 1014, 2094, 2167 |
| MboI | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| MfeI | CAATTG | 1 cut(s) | 1375 |
| MflI | RGATCY | 1 cut(s) | 899 |
| MluCI | AATT | 8 cut(s) | 161, 319, 454, 662, 760, 1375, 1680, 2243 |
| MlyI | GAGTC | 3 cut(s) | 110, 311, 512 |
| Mph1103I | ATGCAT | 1 cut(s) | 1897 |
| MroI | TCCGGA | 2 cut(s) | 1632, 2011 |
| MseI | TTAA | 5 cut(s) | 323, 804, 1392, 1695, 1986 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1310 |
| MspA1I | CMGCKG | 1 cut(s) | 959 |
| MspI | CCGG | 6 cut(s) | 639, 1633, 1872, 2012, 2184, 2235 |
| MspR9I | CCNGG | 3 cut(s) | 639, 640, 857 |
| MunI | CAATTG | 1 cut(s) | 1375 |
| Mva1269I | GAATGC | 3 cut(s) | 1003, 1895, 2086 |
| MvaI | CCWGG | 1 cut(s) | 857 |
| MvnI | CGCG | 1 cut(s) | 2018 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 449, 615, 665, 674, 998 |
| NciI | CCSGG | 2 cut(s) | 639, 640 |
| NdeI | CATATG | 1 cut(s) | 1248 |
| NdeII | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| NlaIV | GGNNCC | 2 cut(s) | 637, 1239 |
| NmuCI | GTSAC | 3 cut(s) | 1120, 1788, 2225 |
| NsiI | ATGCAT | 1 cut(s) | 1897 |
| NspI | RCATGY | 3 cut(s) | 618, 1235, 1796 |
| OliI | CACNNNNGTG | 1 cut(s) | 1310 |
| PaeR7I | CTCGAG | 1 cut(s) | 1685 |
| PagI | TCATGA | 1 cut(s) | 1509 |
| PceI | AGGCCT | 2 cut(s) | 193, 298 |
| PctI | GAATGC | 3 cut(s) | 1003, 1895, 2086 |
| PfeI | GAWTC | 5 cut(s) | 487, 597, 1095, 1166, 1546 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 182, 584 |
| PkrI | GCNGC | 7 cut(s) | 346, 670, 673, 676, 738, 958, 961 |
| PleI | GAGTC | 3 cut(s) | 110, 310, 511 |
| PpsI | GAGTC | 3 cut(s) | 110, 310, 511 |
| Ppu21I | YACGTR | 1 cut(s) | 2299 |
| PpuMI | RGGWCCY | 1 cut(s) | 635 |
| PsiI | TTATAA | 2 cut(s) | 551, 1994 |
| Psp1406I | AACGTT | 1 cut(s) | 2293 |
| Psp5II | RGGWCCY | 1 cut(s) | 635 |
| Psp6I | CCWGG | 1 cut(s) | 855 |
| PspGI | CCWGG | 1 cut(s) | 855 |
| PspN4I | GGNNCC | 2 cut(s) | 637, 1239 |
| PspPI | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| PspPPI | RGGWCCY | 1 cut(s) | 635 |
| PstI | CTGCAG | 1 cut(s) | 958 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1533 |
| PsuI | RGATCY | 1 cut(s) | 899 |
| PvuII | CAGCTG | 1 cut(s) | 959 |
| RsaI | GTAC | 1 cut(s) | 1889 |
| RsaNI | GTAC | 1 cut(s) | 1888 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SaqAI | TTAA | 5 cut(s) | 323, 804, 1392, 1695, 1986 |
| SatI | GCNGC | 7 cut(s) | 345, 669, 672, 675, 737, 957, 960 |
| Sau3AI | GATC | 7 cut(s) | 58, 178, 811, 899, 1012, 2092, 2165 |
| Sau96I | GGNCC | 3 cut(s) | 635, 1020, 1355 |
| SchI | GAGTC | 3 cut(s) | 110, 311, 512 |
| ScrFI | CCNGG | 3 cut(s) | 639, 640, 857 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| SfcI | CTRYAG | 1 cut(s) | 954 |
| Sfr274I | CTCGAG | 1 cut(s) | 1685 |
| SinI | GGWCC | 1 cut(s) | 635 |
| SlaI | CTCGAG | 1 cut(s) | 1685 |
| SmaI | CCCGGG | 1 cut(s) | 640 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1310 |
| SmlI | CTYRAG | 3 cut(s) | 362, 1685, 2029 |
| SmoI | CTYRAG | 3 cut(s) | 362, 1685, 2029 |
| Sse9I | AATT | 8 cut(s) | 161, 319, 454, 662, 760, 1375, 1680, 2243 |
| SseBI | AGGCCT | 2 cut(s) | 193, 298 |
| SsiI | CCGC | 4 cut(s) | 588, 618, 659, 2018 |
| SspMI | CTAG | 5 cut(s) | 561, 941, 1292, 1382, 1803 |
| StuI | AGGCCT | 2 cut(s) | 193, 298 |
| StyD4I | CCNGG | 3 cut(s) | 637, 638, 855 |
| StyI | CCWWGG | 2 cut(s) | 417, 1972 |
| TaaI | ACNGT | 6 cut(s) | 11, 399, 1158, 1720, 1959, 2055 |
| TaiI | ACGT | 5 cut(s) | 1570, 1713, 1810, 2296, 2301 |
| TaqI | TCGA | 7 cut(s) | 1668, 1686, 1857, 1916, 1943, 2115, 2168 |
| TaqII | GACCGA | 1 cut(s) | 592 |
| TasI | AATT | 8 cut(s) | 161, 319, 454, 662, 760, 1375, 1680, 2243 |
| TatI | WGTACW | 1 cut(s) | 1887 |
| TfiI | GAWTC | 5 cut(s) | 487, 597, 1095, 1166, 1546 |
| Tru1I | TTAA | 5 cut(s) | 323, 804, 1392, 1695, 1986 |
| Tru9I | TTAA | 5 cut(s) | 323, 804, 1392, 1695, 1986 |
| TscAI | CASTG | 5 cut(s) | 1014, 1022, 1289, 1424, 1723 |
| TseFI | GTSAC | 3 cut(s) | 1120, 1788, 2225 |
| TseI | GCWGC | 7 cut(s) | 344, 668, 671, 674, 736, 956, 959 |
| Tsp45I | GTSAC | 3 cut(s) | 1120, 1788, 2225 |
| TspGWI | ACGGA | 3 cut(s) | 343, 1088, 2145 |
| TspMI | CCCGGG | 1 cut(s) | 638 |
| TspRI | CASTG | 5 cut(s) | 1014, 1022, 1289, 1424, 1723 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 182, 584 |
| VpaK11BI | GGWCC | 1 cut(s) | 635 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1730 |
| XapI | RAATTY | 2 cut(s) | 662, 1680 |
| XbaI | TCTAGA | 1 cut(s) | 1802 |
| XceI | RCATGY | 3 cut(s) | 618, 1235, 1796 |
| XhoI | CTCGAG | 1 cut(s) | 1685 |
| XmaI | CCCGGG | 1 cut(s) | 638 |
| XmiI | GTMKAC | 2 cut(s) | 1043, 2202 |
| XspI | CTAG | 5 cut(s) | 561, 941, 1292, 1382, 1803 |
| ZraI | GACGTC | 1 cut(s) | 1808 |
| Zsp2I | ATGCAT | 1 cut(s) | 1897 |