Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

11074751 .. 11081530

Gene Structure 6780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G104000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGGGGCACGGTGATAAAGGCCGACCCAGTAAAAAGCTCAAATTTTCTGCCAAGGAAATCACACACCTGGATGACGAAGACGCATATTTCGGTGGCGAAGATATCGACGAAGATGTTCGAGATGGTGAAGGGAAAAAGAGGGACTTTACCAAGTTAGAATTGAAACCGGACCACATCAATCGGCCTTTATGGGCTTGCGCTGATGGCCGAATTTTCCTCGAAACTTTCTCACCTTTGTACAAACAAGCATATGATTTTCTCATTGCCATTGCAGAACCCGTTTGCAGGCCAGAATCGATGCATGAGTACAATTTGACCCCGCACTCGTTGTATGCCGCTGTGTCAGTTGGTCTTGAAACGGAAACCATCATTTCTGTTTTGAATAAGTTGTCAAAGACCAAGCTTCCCAAAGAAATGATTGATTTCATACATGGTTCTACTGCCAATTACGGCAAAGTGAAGCTTGTGCTTAAGAAGAATCGGTACCTTGTCGAATCCCCATTCCCAGAGGTATTGAAGACATTGCTTAAGGACGAAGTTATATCTAAATCAAGGATTATCTCTGAGGGTTCTCGTGGAAGTGATGGATTTACGATTAGCAAAACAATGGGTGAAATTGGAGCTGGTCCCAGTGATTTGCTAAATGAAGCAGAATTGGCAGCTGCGGCTGAAGAAAAAGAAACTCATGCATTTGAAGTCGATCCTACACAGGTTGAAAATGTTAAGGAACGTTGCCTGCCTAATGCTTTGAATTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACTGTTAACCCTGATCTTGATATGGAACTGAAGCCTCAAGCGCAACCACGACCATATCAGGAGAAGAGCTTGAGTAAAATGTTTGGGAACGGGAGAGCAAGATCTGGAATTATTGTGCTACCCTGTGGTGCCGGAAAATCTCTAGTTGGTGTTTCTGCAGCTTCCCGAATAAGAAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTTTCTGTTGATCAGTGGGCTTTTCAGTTCAAGTTGTGGTCTACCATCCGTGATGAGCAAATTTGTCGTTTCACATCTGATAGTAAAGAAAGGTTCCGTGGAAATGCCGGGGTGGTTGTGACAACATATAACATGGTTGCCTTTGGTGGCAAGAGGTCGGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGATGAGGTACACGTTGTTCCTGCTCAAATGTTTCGAAAGGTCATTAGCCTTACTAAGTCTCACTGCAAGCTGGGTCTCACTGCCACACTTGTGAGAGAGGATGAGAGGATCACAGATCTGAACTTCCTTATTGGTCCAAAATTGTATGAAGCAAACTGGTTGGATTTGGTAAAAGGTGGATTTATTGCAAATGTACAGTGCGCTGAAGTATGGTGTCCAATGACAAAAGAGTTCTTTGCGCAATATTTGAAGAAAGAGAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAACCCAAATAAGTTCAGGGCATGCGAGTTTCTTATTCGGTTTCATGAACAGCAACGTGGCGACAAAATTATTGTCTTTGCTGACAATCTTTTTGCTCTCGTGGAATATGCAATGAAACTTCGGAAACCTATGATCTATGGTGCCACCAGCCATGTTGAGAGGACAAAAATCCTAGAAGCTTTCAAAACAAGTCGGGATGTAAACACTATATTTTTGTCTAAGGTAGGTGATAATTCCATAGACATTCCGGAGGCAAATGTGATAATTCAGATATCATCACATGCTGGTTCAAGGCGTCAAGAAGCGCAGCGTCTTGGTCGTATTCTAAGGGCAAAGGGTAAACTTCAGGATCGGATGGCAGGGGGTAAAGAGGAGTACAATGCATTCTTTTATTCCCTCGTGTCAATGGATACACAGGAGATGTACTATTCGACTAAACGACAGCAGTTTTTGATTGACCAAGGTTATAGTTTCAAGGTTATTACAGGCTTGCCCCCACCTGATTCTGGTCCTGAGTTGAACTACCACAGTCTTGATGACCAACTGGCACTACTCACAAAGGTGTTGAGTGCTGGTGATGAGGCAGTTGGCTTAGAGCAACTAGAAGAAGATGCTGATGACATTGCCCTTCATAAAGCCCGTCGGTTTGGTGGATCCATGAGTGCTATGTCAGGTGCAAATGGGATGGTTTACATGGAATACAGTACTGGGAGACACAAACTTGGCAAAGGCCAGATGAAGAGTAAGCCCAAGGATCCGGCCAAGCGACATCATTTGTTTAAAAGACGGTTTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

767

Amino Acids

86.44

Weight (kDa)

8.37

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1452
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	3 cut(s)	483, 917, 1643
AccI	GTMKAC	1 cut(s)	1034
AccIII	TCCGGA	1 cut(s)	1750
AciI	CCGC	3 cut(s)	320, 336, 665
AclI	AACGTT	1 cut(s)	730
AclWI	GGATC	7 cut(s)	695, 1328, 1860, 2151, 2164, 2252, 2265
AcoI	YGGCCR	2 cut(s)	205, 2262
AcsI	RAATTY	3 cut(s)	41, 210, 1053
AcuI	CTGAAG	5 cut(s)	690, 763, 839, 1437, 1832
AcyI	GRCGYC	1 cut(s)	1798
AfaI	GTAC	8 cut(s)	239, 308, 485, 1221, 1407, 1880, 1928, 2209
AfiI	CCNNNNNNNGG	2 cut(s)	285, 2009
AflII	CTTAAG	2 cut(s)	470, 527
AflIII	ACRYGT	1 cut(s)	1222
AjnI	CCWGG	1 cut(s)	66
AleI	CACNNNNGTG	2 cut(s)	1301, 2063
Alw26I	GTCTC	3 cut(s)	1275, 1292, 2209
AlwI	GGATC	7 cut(s)	695, 1328, 1860, 2151, 2164, 2252, 2265
Aor13HI	TCCGGA	1 cut(s)	1750
AoxI	GGCC	6 cut(s)	19, 182, 205, 287, 2233, 2262
ApeKI	GCWGC	5 cut(s)	659, 662, 947, 969, 1810
ApoI	RAATTY	3 cut(s)	41, 210, 1053
ArsI	GACNNNNNNTTYG	6 cut(s)	71, 103, 1560, 1577, 1592, 1609
Asp700I	GAANNNNTTC	1 cut(s)	114
Asp718I	GGTACC	1 cut(s)	483
AspLEI	GCGC	5 cut(s)	200, 832, 1415, 1453, 1810
AspS9I	GGNCC	4 cut(s)	169, 626, 1346, 2012
AsuC2I	CCSGG	1 cut(s)	1102
AsuHPI	GGTGA	6 cut(s)	23, 137, 222, 623, 1742, 2090
AsuII	TTCGAA	1 cut(s)	1246
AvaII	GGWCC	4 cut(s)	169, 626, 1346, 2012
BaeGI	GKGCMC	1 cut(s)	9
BamHI	GGATCC	2 cut(s)	2156, 2257
BanI	GGYRCC	3 cut(s)	483, 917, 1643
BarI	GAAGNNNNNNTAC	2 cut(s)	467, 499
BauI	CACGAG	3 cut(s)	573, 1601, 1901
BbsI	GAAGAC	2 cut(s)	84, 524
BbvI	GCAGC	5 cut(s)	649, 671, 956, 959, 1822
BccI	CCATC	7 cut(s)	116, 197, 374, 578, 1046, 1852, 2182
BceAI	ACGGC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	1040, 1074
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	1906
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	1 cut(s)	1102
BcoDI	GTCTC	3 cut(s)	1275, 1292, 2209
BfaI	CTAG	3 cut(s)	932, 1676, 2105
BfmI	CTRYAG	1 cut(s)	945
BfrI	CTTAAG	2 cut(s)	470, 527
BfuI	GTATCC	1 cut(s)	1906
BglII	AGATCT	2 cut(s)	890, 1327
BisI	GCNGC	7 cut(s)	336, 660, 663, 666, 948, 970, 1811
BlsI	GCNGC	7 cut(s)	337, 661, 664, 667, 949, 971, 1812
BmcAI	AGTACT	1 cut(s)	2209
Bme1390I	CCNGG	2 cut(s)	68, 1102
Bme18I	GGWCC	4 cut(s)	169, 626, 1346, 2012
BmgT120I	GGNCC	4 cut(s)	169, 626, 1346, 2012
BmiI	GGNNCC	7 cut(s)	485, 628, 919, 1088, 1645, 2158, 2259
BmrFI	CCNGG	2 cut(s)	68, 1102
BmrI	ACTGGG	3 cut(s)	21, 624, 2220
BmsI	GCATC	2 cut(s)	288, 2104
BmuI	ACTGGG	3 cut(s)	21, 624, 2220
BpiI	GAAGAC	2 cut(s)	84, 524
Bpu14I	TTCGAA	1 cut(s)	1246
BpuEI	CTTGAG	2 cut(s)	810, 880
BpuMI	CCSGG	1 cut(s)	1102
Bsa29I	ATCGAT	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	1798
BsaI	GGTCTC	1 cut(s)	1292
BsaJI	CCNNGG	5 cut(s)	51, 1090, 1101, 1963, 2253
BsaWI	WCCGGW	2 cut(s)	166, 1750
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 2009
Bse1I	ACTGG	5 cut(s)	27, 630, 1373, 2052, 2215
Bse3DI	GCAATG	5 cut(s)	261, 267, 521, 1620, 2124
BseAI	TCCGGA	1 cut(s)	1750
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	296
BseDI	CCNNGG	5 cut(s)	51, 1090, 1101, 1963, 2253
BseGI	GGATG	7 cut(s)	76, 1038, 1219, 1318, 1705, 1863, 2193
BseLI	CCNNNNNNNGG	2 cut(s)	285, 2009
BseMI	GCAATG	5 cut(s)	261, 267, 521, 1620, 2124
BseMII	CTCAG	2 cut(s)	555, 2007
BseNI	ACTGG	5 cut(s)	27, 630, 1373, 2052, 2215
BseRI	GAGGAG	2 cut(s)	782, 1889
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	5 cut(s)	649, 671, 956, 959, 1822
BseYI	CCCAGC	1 cut(s)	1282
BshFI	GGCC	6 cut(s)	21, 184, 207, 289, 2235, 2264
BshNI	GGYRCC	3 cut(s)	483, 917, 1643
BshVI	ATCGAT	1 cut(s)	296
BsiSI	CCGG	5 cut(s)	167, 921, 1101, 1751, 2261
BslFI	GGGAC	2 cut(s)	155, 612
BslI	CCNNNNNNNGG	2 cut(s)	285, 2009
BsmAI	GTCTC	3 cut(s)	1275, 1292, 2209
BsmFI	GGGAC	2 cut(s)	155, 612
BsmI	GAATGC	1 cut(s)	1886
BsnI	GGCC	6 cut(s)	21, 184, 207, 289, 2235, 2264
Bso31I	GGTCTC	1 cut(s)	1292
Bsp119I	TTCGAA	1 cut(s)	1246
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	1750
Bsp1407I	TGTACA	2 cut(s)	237, 1405
BspACI	CCGC	3 cut(s)	320, 336, 665
BspANI	GGCC	6 cut(s)	21, 184, 207, 289, 2235, 2264
BspCNI	CTCAG	2 cut(s)	556, 2008
BspDI	ATCGAT	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	1750
BspHI	TCATGA	1 cut(s)	1546
BspLI	GGNNCC	7 cut(s)	485, 628, 919, 1088, 1645, 2158, 2259
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	7 cut(s)	695, 1328, 1860, 2151, 2164, 2252, 2265
BspQI	GCTCTTC	1 cut(s)	848
BspT104I	TTCGAA	1 cut(s)	1246
BspT107I	GGYRCC	3 cut(s)	483, 917, 1643
BspTI	CTTAAG	2 cut(s)	470, 527
BspTNI	GGTCTC	1 cut(s)	1292
BsrDI	GCAATG	5 cut(s)	261, 267, 521, 1620, 2124
BsrGI	TGTACA	2 cut(s)	237, 1405
BsrI	ACTGG	5 cut(s)	27, 630, 1373, 2052, 2215
BssECI	CCNNGG	5 cut(s)	51, 1090, 1101, 1963, 2253
BssNI	GRCGYC	1 cut(s)	1798
BssSI	CACGAG	3 cut(s)	573, 1601, 1901
BssT1I	CCWWGG	3 cut(s)	51, 1963, 2253
Bst2BI	CACGAG	3 cut(s)	573, 1601, 1901
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	6 cut(s)	11, 793, 1410, 2033, 2207, 2292
Bst6I	CTCTTC	2 cut(s)	848, 2237
BstACI	GRCGYC	1 cut(s)	1798
BstAFI	CTTAAG	2 cut(s)	470, 527
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstAUI	TGTACA	2 cut(s)	237, 1405
BstBI	TTCGAA	1 cut(s)	1246
BstC8I	GCNNGC	7 cut(s)	196, 287, 737, 1280, 1488, 1525, 1994
BstDEI	CTNAG	6 cut(s)	564, 1266, 1722, 1829, 2016, 2095
BstDSI	CCRYGG	1 cut(s)	1090
BstF5I	GGATG	7 cut(s)	76, 1038, 1219, 1318, 1705, 1863, 2193
BstHHI	GCGC	5 cut(s)	200, 832, 1415, 1453, 1810
BstMAI	GTCTC	3 cut(s)	1275, 1292, 2209
BstMWI	GCNNNNNNNGC	5 cut(s)	204, 656, 665, 829, 989
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	2 cut(s)	1527, 1787
BstSCI	CCNGG	2 cut(s)	66, 1100
BstSFI	CTRYAG	1 cut(s)	945
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	5 cut(s)	649, 671, 956, 959, 1822
BstV2I	GAAGAC	2 cut(s)	84, 524
BstX2I	RGATCY	4 cut(s)	890, 1327, 2156, 2257
BstYI	RGATCY	4 cut(s)	890, 1327, 2156, 2257
Bsu15I	ATCGAT	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	1906
BsuRI	GGCC	6 cut(s)	21, 184, 207, 289, 2235, 2264
BsuTUI	ATCGAT	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	1090
BtsCI	GGATG	7 cut(s)	76, 1038, 1219, 1318, 1705, 1863, 2193
BtsI	GCAGTG	2 cut(s)	1273, 1290
BtsIMutI	CAGTG	5 cut(s)	637, 1013, 1273, 1290, 1415
Cac8I	GCNNGC	7 cut(s)	196, 287, 737, 1280, 1488, 1525, 1994
CciI	TCATGA	1 cut(s)	1546
CfoI	GCGC	5 cut(s)	200, 832, 1415, 1453, 1810
Cfr13I	GGNCC	4 cut(s)	169, 626, 1346, 2012
ClaI	ATCGAT	1 cut(s)	296
CseI	GACGC	3 cut(s)	89, 1787, 1802
Csp6I	GTAC	8 cut(s)	238, 307, 484, 1220, 1406, 1879, 1927, 2208
CviQI	GTAC	8 cut(s)	238, 307, 484, 1220, 1406, 1879, 1927, 2208
DdeI	CTNAG	6 cut(s)	564, 1266, 1722, 1829, 2016, 2095
DraI	TTTAAA	1 cut(s)	2284
EaeI	YGGCCR	2 cut(s)	205, 2262
Eam1104I	CTCTTC	2 cut(s)	848, 2237
EarI	CTCTTC	2 cut(s)	848, 2237
Eco130I	CCWWGG	3 cut(s)	51, 1963, 2253
Eco31I	GGTCTC	1 cut(s)	1292
Eco32I	GATATC	2 cut(s)	103, 1776
Eco47I	GGWCC	4 cut(s)	169, 626, 1346, 2012
Eco57I	CTGAAG	5 cut(s)	690, 763, 839, 1437, 1832
EcoRII	CCWGG	1 cut(s)	66
EcoRV	GATATC	2 cut(s)	103, 1776
EcoT14I	CCWWGG	3 cut(s)	51, 1963, 2253
EcoT22I	ATGCAT	3 cut(s)	303, 691, 1888
ErhI	CCWWGG	3 cut(s)	51, 1963, 2253
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 447, 479
FaqI	GGGAC	2 cut(s)	155, 612
FauI	CCCGC	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	1 cut(s)	1034
Fnu4HI	GCNGC	7 cut(s)	336, 660, 663, 666, 948, 970, 1811
FokI	GGATG	7 cut(s)	83, 1025, 1226, 1325, 1712, 1870, 2200
Fsp4HI	GCNGC	7 cut(s)	336, 660, 663, 666, 948, 970, 1811
FspBI	CTAG	3 cut(s)	932, 1676, 2105
FspI	TGCGCA	1 cut(s)	1452
GlaI	GCGC	5 cut(s)	199, 831, 1414, 1452, 1809
GluI	GCNGC	7 cut(s)	336, 660, 663, 666, 948, 970, 1811
GsaI	CCCAGC	1 cut(s)	1286
HaeIII	GGCC	6 cut(s)	21, 184, 207, 289, 2235, 2264
HapII	CCGG	5 cut(s)	167, 921, 1101, 1751, 2261
HgaI	GACGC	3 cut(s)	89, 1787, 1802
HhaI	GCGC	5 cut(s)	200, 832, 1415, 1453, 1810
Hin1I	GRCGYC	1 cut(s)	1798
Hin6I	GCGC	5 cut(s)	198, 830, 1413, 1451, 1808
HinP1I	GCGC	5 cut(s)	198, 830, 1413, 1451, 1808
HincII	GTYRAC	1 cut(s)	796
HindII	GTYRAC	1 cut(s)	796
HindIII	AAGCTT	3 cut(s)	401, 461, 1680
HinfI	GANTC	5 cut(s)	293, 478, 494, 1157, 2006
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	5 cut(s)	167, 921, 1101, 1751, 2261
HphI	GGTGA	6 cut(s)	23, 137, 222, 623, 1742, 2090
Hpy166II	GTNNAC	6 cut(s)	796, 1035, 1222, 1705, 1844, 2194
Hpy188I	TCNGA	9 cut(s)	565, 782, 1072, 1153, 1162, 1332, 1626, 1773, 1857
Hpy8I	GTNNAC	6 cut(s)	796, 1035, 1222, 1705, 1844, 2194
Hpy99I	CGWCG	2 cut(s)	110, 2148
HpyAV	CCTTC	2 cut(s)	122, 2141
HpyCH4III	ACNGT	6 cut(s)	11, 793, 1410, 2033, 2207, 2292
HpyCH4IV	ACGT	3 cut(s)	730, 1224, 1558
HpyF10VI	GCNNNNNNNGC	5 cut(s)	204, 656, 665, 829, 989
HpyF3I	CTNAG	6 cut(s)	564, 1266, 1722, 1829, 2016, 2095
HpySE526I	ACGT	3 cut(s)	730, 1224, 1558
Hsp92I	GRCGYC	1 cut(s)	1798
HspAI	GCGC	5 cut(s)	198, 830, 1413, 1451, 1808
Kpn2I	TCCGGA	1 cut(s)	1750
KpnI	GGTACC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	1003
KspAI	GTTAAC	1 cut(s)	796
LguI	GCTCTTC	1 cut(s)	848
LmnI	GCTCC	1 cut(s)	620
Lsp1109I	GCAGC	5 cut(s)	649, 671, 956, 959, 1822
LweI	GCATC	2 cut(s)	288, 2104
MaeI	CTAG	3 cut(s)	932, 1676, 2105
MaeII	ACGT	3 cut(s)	730, 1224, 1558
MaeIII	GTNAC	1 cut(s)	1111
MflI	RGATCY	4 cut(s)	890, 1327, 2156, 2257
MhlI	GDGCHC	1 cut(s)	9
MmeI	TCCRAC	3 cut(s)	744, 1131, 1353
Mph1103I	ATGCAT	3 cut(s)	303, 691, 1888
MroI	TCCGGA	1 cut(s)	1750
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	5 cut(s)	471, 528, 723, 795, 2283
MslI	CAYNNNNRTG	3 cut(s)	69, 1301, 2063
MspA1I	CMGCKG	2 cut(s)	338, 662
MspCI	CTTAAG	2 cut(s)	470, 527
MspI	CCGG	5 cut(s)	167, 921, 1101, 1751, 2261
MspR9I	CCNGG	2 cut(s)	68, 1102
Mva1269I	GAATGC	1 cut(s)	1886
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	5 cut(s)	204, 656, 665, 829, 989
NciI	CCSGG	1 cut(s)	1102
NdeI	CATATG	1 cut(s)	250
NlaIV	GGNNCC	7 cut(s)	485, 628, 919, 1088, 1645, 2158, 2259
NmuCI	GTSAC	1 cut(s)	1111
NsbI	TGCGCA	1 cut(s)	1452
NsiI	ATGCAT	3 cut(s)	303, 691, 1888
NspI	RCATGY	2 cut(s)	1527, 1787
NspV	TTCGAA	1 cut(s)	1246
OliI	CACNNNNGTG	2 cut(s)	1301, 2063
PaeI	GCATGC	1 cut(s)	1527
PagI	TCATGA	1 cut(s)	1546
PciSI	GCTCTTC	1 cut(s)	848
PctI	GAATGC	1 cut(s)	1886
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	293, 478, 494, 1157, 2006
PkrI	GCNGC	7 cut(s)	337, 661, 664, 667, 949, 971, 1812
Psp1406I	AACGTT	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	1282
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	7 cut(s)	485, 628, 919, 1088, 1645, 2158, 2259
PspPI	GGNCC	4 cut(s)	169, 626, 1346, 2012
PsrI	GAACNNNNNNTAC	2 cut(s)	1212, 1244
PstI	CTGCAG	1 cut(s)	949
PsuI	RGATCY	4 cut(s)	890, 1327, 2156, 2257
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	8 cut(s)	239, 308, 485, 1221, 1407, 1880, 1928, 2209
RsaNI	GTAC	8 cut(s)	238, 307, 484, 1220, 1406, 1879, 1927, 2208
RseI	CAYNNNNRTG	3 cut(s)	69, 1301, 2063
SapI	GCTCTTC	1 cut(s)	848
SaqAI	TTAA	5 cut(s)	471, 528, 723, 795, 2283
SatI	GCNGC	7 cut(s)	336, 660, 663, 666, 948, 970, 1811
Sau96I	GGNCC	4 cut(s)	169, 626, 1346, 2012
ScaI	AGTACT	1 cut(s)	2209
ScrFI	CCNGG	2 cut(s)	68, 1102
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	288, 2104
SfcI	CTRYAG	1 cut(s)	945
SfuI	TTCGAA	1 cut(s)	1246
SinI	GGWCC	4 cut(s)	169, 626, 1346, 2012
SmiMI	CAYNNNNRTG	3 cut(s)	69, 1301, 2063
SmlI	CTYRAG	4 cut(s)	470, 527, 825, 859
SmoI	CTYRAG	4 cut(s)	470, 527, 825, 859
SphI	GCATGC	1 cut(s)	1527
SsiI	CCGC	3 cut(s)	320, 336, 665
SspI	AATATT	1 cut(s)	1457
SspMI	CTAG	3 cut(s)	932, 1676, 2105
StyD4I	CCNGG	2 cut(s)	66, 1100
StyI	CCWWGG	3 cut(s)	51, 1963, 2253
TaaI	ACNGT	6 cut(s)	11, 793, 1410, 2033, 2207, 2292
TaiI	ACGT	3 cut(s)	733, 1227, 1561
TaqI	TCGA	8 cut(s)	105, 118, 219, 296, 492, 699, 1246, 1934
TatI	WGTACW	6 cut(s)	237, 306, 1405, 1878, 1926, 2207
TauI	GCSGC	2 cut(s)	338, 668
TfiI	GAWTC	5 cut(s)	293, 478, 494, 1157, 2006
Tru1I	TTAA	5 cut(s)	471, 528, 723, 795, 2283
Tru9I	TTAA	5 cut(s)	471, 528, 723, 795, 2283
TscAI	CASTG	5 cut(s)	637, 1013, 1280, 1297, 1415
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	5 cut(s)	659, 662, 947, 969, 1810
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	9 cut(s)	415, 660, 1374, 1517, 1535, 1563, 1631, 2123, 2255
TspGWI	ACGGA	3 cut(s)	374, 1031, 1079
TspRI	CASTG	5 cut(s)	637, 1013, 1280, 1297, 1415
Vha464I	CTTAAG	2 cut(s)	470, 527
VpaK11BI	GGWCC	4 cut(s)	169, 626, 1346, 2012
XapI	RAATTY	3 cut(s)	41, 210, 1053
XceI	RCATGY	2 cut(s)	1527, 1787
XmiI	GTMKAC	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	3 cut(s)	932, 1676, 2105
ZrmI	AGTACT	1 cut(s)	2209
Zsp2I	ATGCAT	3 cut(s)	303, 691, 1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.