Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

49264829 .. 49265887

Gene Structure 1059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003497

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTTAATCCGCCGCAAAAGCAATGCTGCTGGGGTGGTGGTTGTGACTACATATAGCATGCTTGGCTGTGGTGGCAATAGGTCCCAACAGTCTAAAAACATTATTGAGGAAATAAAAAATAGAGAATGGGGGTTGATTCTCATGGATGAGGTTCATGTAACTCCTGCTGAATCGTTTAGAAATGTCATCCGAATCACCAAATCACACTGCAAGCTTGGCCTCACGGCGACGCTCTTGAGAGAAGATGACAAGATATCAGATCTCAACTTCCTCATTGGACCCAAATTATATGAAGCAAACTGGTTGGATTTGGCGAAACGAGGATACATTGCAAATGTGCTGTGTGCTGAATTTCATGAGCAGCAGCGCCGTGGTGATAAGATCATAGTCTTTTCCGACAACCTCTTCACCCTCACTGAATATGCCACCAAGCTCCGAAAACCTATGATTTATGGTGCCACCACGCAGGCTGAGACGACAAAAGTTCTAGAAGAGTTCAAAACAAACCCGGACGTAAACACCGTATTCATGTCTAAGGTGGGTGATAACTCCTTGGACATTCCCGAGGCGAATGTGATCATAAAGATTTCATGGCACGGCGGTTCGAGACGACAAGAAGCGCAGCGTCTTGGTCGGATTCTAAGGGCCAAGAAAAGTAAAGAGAAGTACAATGCATTCTTCTATTCCCTCGTGTCATCGGATACATGGGAAATGGAATTTGCAGCTAAAAGGCAGCAGTTTTTGGTCAATCAAGGTTATAGTTATAAGATTCTTACAAGCTTGCAATTGCCTGATTTTTCTCCACTTGGATCAGGAGCTTTGAGCTATGACAGTCTTCAAGATCAACGAGCACTGCTCAAGAAAGTGTTGAGCGTTAAAGAGGCTATAGTTGGGGCCGAAGATCCACTAGTAGAAGATGTAGATGGCATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

312

Amino Acids

35.16

Weight (kDa)

8.77

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	11 - 78	2.7e-07	Type III restriction enzyme, res subunit
Helicase_C	PF00271	113 - 216	6.5e-13	Helicase conserved C-terminal domain
ERCC3_RAD25_C	PF16203	118 - 299	1.3e-77	ERCC3/RAD25/XPB C-terminal helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AccB1I	GGYRCC	1 cut(s)	455
AciI	CCGC	3 cut(s)	10, 13, 600
AclWI	GGATC	2 cut(s)	817, 896
AcsI	RAATTY	2 cut(s)	350, 716
AfaI	GTAC	1 cut(s)	668
AgsI	TTSAA	2 cut(s)	499, 839
AhlI	ACTAGT	1 cut(s)	907
AluBI	AGCT	6 cut(s)	214, 433, 725, 780, 818, 825
AluI	AGCT	6 cut(s)	214, 433, 725, 780, 818, 825
Alw21I	GWGCWC	1 cut(s)	853
Alw26I	GTCTC	2 cut(s)	467, 601
AlwI	GGATC	2 cut(s)	817, 896
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	217, 645, 894
ApeKI	GCWGC	6 cut(s)	26, 361, 364, 622, 722, 733
ApoI	RAATTY	2 cut(s)	350, 716
AspLEI	GCGC	2 cut(s)	369, 622
AspS9I	GGNCC	4 cut(s)	81, 278, 645, 894
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	4 cut(s)	187, 386, 400, 554
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	2 cut(s)	81, 278
BanI	GGYRCC	1 cut(s)	455
BauI	CACGAG	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	853
BbvI	GCAGC	6 cut(s)	13, 373, 376, 634, 734, 745
BccI	CCATC	1 cut(s)	917
BceAI	ACGGC	3 cut(s)	240, 354, 613
BciVI	GTATCC	2 cut(s)	317, 694
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	2 cut(s)	467, 601
BcuI	ACTAGT	1 cut(s)	907
BfaI	CTAG	2 cut(s)	488, 908
BfmI	CTRYAG	1 cut(s)	885
BfoI	RGCGCY	1 cut(s)	370
BfuI	GTATCC	2 cut(s)	317, 694
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	7 cut(s)	13, 27, 362, 365, 623, 723, 734
BlsI	GCNGC	7 cut(s)	14, 28, 363, 366, 624, 724, 735
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	2 cut(s)	81, 278
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	4 cut(s)	81, 278, 645, 894
BmiI	GGNNCC	4 cut(s)	83, 280, 457, 895
BmrFI	CCNGG	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	827
BplI	GAGNNNNNCTC	2 cut(s)	840, 872
BpuEI	CTTGAG	2 cut(s)	256, 842
BpuMI	CCSGG	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	370, 552, 564
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	28, 327
BseDI	CCNNGG	3 cut(s)	370, 552, 564
BseGI	GGATG	2 cut(s)	151, 186
BseMI	GCAATG	2 cut(s)	28, 327
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	6 cut(s)	13, 373, 376, 634, 734, 745
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	3 cut(s)	219, 647, 896
BshNI	GGYRCC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	467, 601
BsmBI	CGTCTC	2 cut(s)	467, 601
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	674
BsnI	GGCC	3 cut(s)	219, 647, 896
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp143I	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
BspACI	CCGC	3 cut(s)	10, 13, 600
BspANI	GGCC	3 cut(s)	219, 647, 896
BspCNI	CTCAG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	4 cut(s)	83, 280, 457, 895
BspPI	GGATC	2 cut(s)	817, 896
BspT107I	GGYRCC	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	28, 327
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	370, 552, 564
BssMI	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
BssSI	CACGAG	1 cut(s)	689
BssT1I	CCWWGG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	689
Bst4CI	ACNGT	3 cut(s)	90, 523, 833
Bst6I	CTCTTC	2 cut(s)	410, 486
BstC8I	GCNNGC	5 cut(s)	59, 212, 468, 782, 929
BstDEI	CTNAG	3 cut(s)	471, 534, 641
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	151, 186
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	369, 622
BstKTI	GATC	6 cut(s)	262, 384, 579, 812, 844, 904
BstMAI	GTCTC	2 cut(s)	467, 601
BstMBI	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 63, 72, 216
BstNSI	RCATGY	2 cut(s)	61, 931
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	885
BstV1I	GCAGC	6 cut(s)	13, 373, 376, 634, 734, 745
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	2 cut(s)	259, 901
BstYI	RGATCY	2 cut(s)	259, 901
BsuI	GTATCC	2 cut(s)	317, 694
BsuRI	GGCC	3 cut(s)	219, 647, 896
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	151, 186
BtsI	GCAGTG	2 cut(s)	205, 851
BtsIMutI	CAGTG	3 cut(s)	205, 414, 851
Cac8I	GCNNGC	5 cut(s)	59, 212, 468, 782, 929
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	2 cut(s)	369, 622
Cfr13I	GGNCC	4 cut(s)	81, 278, 645, 894
CseI	GACGC	2 cut(s)	238, 614
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	8 cut(s)	58, 142, 155, 356, 529, 591, 705, 928
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	471, 534, 641
DpnI	GATC	6 cut(s)	261, 383, 578, 811, 843, 903
DpnII	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
Eam1104I	CTCTTC	2 cut(s)	410, 486
EarI	CTCTTC	2 cut(s)	410, 486
Eco130I	CCWWGG	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	81, 278
Eco88I	CYCGRG	1 cut(s)	563
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	2 cut(s)	676, 933
ErhI	CCWWGG	1 cut(s)	552
Esp3I	CGTCTC	2 cut(s)	467, 601
FaeI	CATG	8 cut(s)	61, 145, 158, 359, 532, 594, 708, 931
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	8 cut(s)	57, 141, 154, 355, 528, 590, 704, 927
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	7 cut(s)	13, 27, 362, 365, 623, 723, 734
FokI	GGATG	2 cut(s)	158, 173
Fsp4HI	GCNGC	7 cut(s)	13, 27, 362, 365, 623, 723, 734
FspBI	CTAG	2 cut(s)	488, 908
GlaI	GCGC	2 cut(s)	368, 621
GluI	GCNGC	7 cut(s)	13, 27, 362, 365, 623, 723, 734
GsaI	CCCAGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	3 cut(s)	219, 647, 896
HapII	CCGG	1 cut(s)	509
HgaI	GACGC	2 cut(s)	238, 614
HhaI	GCGC	2 cut(s)	369, 622
Hin1II	CATG	8 cut(s)	61, 145, 158, 359, 532, 594, 708, 931
Hin6I	GCGC	2 cut(s)	367, 620
HinP1I	GCGC	2 cut(s)	367, 620
HindIII	AAGCTT	2 cut(s)	212, 778
HinfI	GANTC	5 cut(s)	136, 170, 192, 637, 769
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	4 cut(s)	187, 386, 400, 554
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	6 cut(s)	191, 259, 397, 437, 636, 700
Hpy188III	TCNNGA	8 cut(s)	235, 356, 488, 563, 606, 813, 839, 859
Hpy8I	GTNNAC	1 cut(s)	517
Hpy99I	CGWCG	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	90, 523, 833
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	6 cut(s)	210, 332, 674, 722, 784, 931
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 63, 72, 216
HpyF3I	CTNAG	3 cut(s)	471, 534, 641
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	8 cut(s)	61, 145, 158, 359, 532, 594, 708, 931
HspAI	GCGC	2 cut(s)	367, 620
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
LmnI	GCTCC	2 cut(s)	438, 815
LpnPI	CCDG	7 cut(s)	15, 177, 286, 452, 522, 798, 804
Lsp1109I	GCAGC	6 cut(s)	13, 373, 376, 634, 734, 745
MaeI	CTAG	2 cut(s)	488, 908
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	43, 157
MalI	GATC	6 cut(s)	261, 383, 578, 811, 843, 903
MboI	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
MboII	GAAGA	7 cut(s)	254, 397, 503, 670, 827, 911, 926
MfeI	CAATTG	1 cut(s)	785
MflI	RGATCY	2 cut(s)	259, 901
MhlI	GDGCHC	1 cut(s)	853
MluCI	AATT	4 cut(s)	284, 350, 716, 785
MmeI	TCCRAC	3 cut(s)	285, 420, 614
Mph1103I	ATGCAT	2 cut(s)	676, 933
MseI	TTAA	2 cut(s)	5, 876
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	509
MunI	CAATTG	1 cut(s)	785
Mva1269I	GAATGC	1 cut(s)	674
MwoI	GCNNNNNNNGC	4 cut(s)	18, 63, 72, 216
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
NlaIII	CATG	8 cut(s)	61, 145, 158, 359, 532, 594, 708, 931
NlaIV	GGNNCC	4 cut(s)	83, 280, 457, 895
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	2 cut(s)	676, 933
NspI	RCATGY	2 cut(s)	61, 931
PaeI	GCATGC	2 cut(s)	61, 931
PagI	TCATGA	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	519
PctI	GAATGC	1 cut(s)	674
PfeI	GAWTC	5 cut(s)	136, 170, 192, 637, 769
PkrI	GCNGC	7 cut(s)	14, 28, 363, 366, 624, 724, 735
PpuMI	RGGWCCY	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	4 cut(s)	83, 280, 457, 895
PspPI	GGNCC	4 cut(s)	81, 278, 645, 894
PspPPI	RGGWCCY	1 cut(s)	81
PsuI	RGATCY	2 cut(s)	259, 901
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	5, 876
SatI	GCNGC	7 cut(s)	13, 27, 362, 365, 623, 723, 734
Sau3AI	GATC	6 cut(s)	259, 381, 576, 809, 841, 901
Sau96I	GGNCC	4 cut(s)	81, 278, 645, 894
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	853
SfcI	CTRYAG	1 cut(s)	885
SinI	GGWCC	2 cut(s)	81, 278
SmlI	CTYRAG	2 cut(s)	235, 857
SmoI	CTYRAG	2 cut(s)	235, 857
SpeI	ACTAGT	1 cut(s)	907
SphI	GCATGC	2 cut(s)	61, 931
Sse9I	AATT	4 cut(s)	284, 350, 716, 785
SsiI	CCGC	3 cut(s)	10, 13, 600
SspMI	CTAG	2 cut(s)	488, 908
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	90, 523, 833
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	605
TasI	AATT	4 cut(s)	284, 350, 716, 785
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	5 cut(s)	136, 170, 192, 637, 769
Tru1I	TTAA	2 cut(s)	5, 876
Tru9I	TTAA	2 cut(s)	5, 876
TscAI	CASTG	3 cut(s)	212, 421, 858
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	6 cut(s)	26, 361, 364, 622, 722, 733
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	5 cut(s)	143, 306, 344, 517, 579
TspRI	CASTG	3 cut(s)	212, 421, 858
VpaK11BI	GGWCC	2 cut(s)	81, 278
XapI	RAATTY	2 cut(s)	350, 716
XbaI	TCTAGA	1 cut(s)	487
XceI	RCATGY	2 cut(s)	61, 931
XspI	CTAG	2 cut(s)	488, 908
Zsp2I	ATGCAT	2 cut(s)	676, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.