Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329503.1

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

46 .. 971

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329503.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 926 bp

atgttaatccgccgcaaaagcaatgctgctggggtggtggttgtgactacatatagcatgcttggctgtggtggcaataggtcccaacagtctaaaaacattattgaggaaataaaaaatagaaaatgggggttgattctcatggatgaggttcatgtaactcctgctgaatcgtttcaaaatgtcatccgaatcaccaaatcacactgcaagcttggcctcacggcgacgctcttgagagaagatgacaagatatcagatctcaacttcctcattggacccaaattatatgaagcaaactggttggatttggcgaaacgaggatacattgcaaatgtgctctgtgctgaagtaaggtgtcagatgacaaaggagttctttgccgagtataagaaagaaaactcctgcgaaagaaagcaagcactttatttgatgaatccaaacaagtttaggatatgcgagtatcttatacagtttcatgagcagcagcgccgtggtgataagatcatagtcttttccgacaacctcttcaccctcactgaatatgccaccaagctccgaaaacctatgatttatggtgccaccacgcaggctgagaggacaaaagttctagaagagttcaaaacaaacccggatgtaaacaccgtattcatgtctaaggtgggtgataactccttggacattcccgaggcaaatgtgatcattgagatttcatggcacggcggttcgagacgacaagaagcgcagcgtcttggtcggattctaagggccaagaaaagtaaagagaagtacaatgcattcttctattcccttgtgtcatcggatacacgggagatggaatttgcagctaaaaggcagcagtttttggtcgatcaaggttatagttataagattgttacaatcttgcaattgcctaattttcctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

309

Amino Acids

35.71

Weight (kDa)

9.34

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	578
AciI	CCGC	3 cut(s)	10, 13, 723
AcsI	RAATTY	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	791
AgsI	TTSAA	2 cut(s)	179, 622
AluBI	AGCT	3 cut(s)	214, 556, 848
AluI	AGCT	3 cut(s)	214, 556, 848
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	724
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	217, 768
ApeKI	GCWGC	6 cut(s)	26, 484, 487, 745, 845, 856
ApoI	RAATTY	1 cut(s)	839
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	492, 745
AspS9I	GGNCC	3 cut(s)	81, 278, 768
AsuC2I	CCSGG	1 cut(s)	632
AsuHPI	GGTGA	4 cut(s)	187, 509, 523, 677
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	2 cut(s)	81, 278
BanI	GGYRCC	1 cut(s)	578
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	6 cut(s)	13, 496, 499, 757, 857, 868
BccI	CCATC	1 cut(s)	829
BceAI	ACGGC	3 cut(s)	240, 477, 736
BciVI	GTATCC	2 cut(s)	317, 817
BclI	TGATCA	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	493
BfuI	GTATCC	2 cut(s)	317, 817
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	7 cut(s)	13, 27, 485, 488, 746, 846, 857
BlsI	GCNGC	7 cut(s)	14, 28, 486, 489, 747, 847, 858
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	2 cut(s)	81, 278
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	3 cut(s)	81, 278, 768
BmiI	GGNNCC	3 cut(s)	83, 280, 580
BmrFI	CCNGG	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	1 cut(s)	632
BsaJI	CCNNGG	3 cut(s)	493, 675, 687
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	28, 327
BseDI	CCNNGG	3 cut(s)	493, 675, 687
BseGI	GGATG	3 cut(s)	151, 186, 640
BseMI	GCAATG	2 cut(s)	28, 327
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	6 cut(s)	13, 496, 499, 757, 857, 868
BseYI	CCCAGC	1 cut(s)	29
BshFI	GGCC	2 cut(s)	219, 770
BshNI	GGYRCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	632
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	797
BsnI	GGCC	2 cut(s)	219, 770
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	259, 504, 699, 871
BspACI	CCGC	3 cut(s)	10, 13, 723
BspANI	GGCC	2 cut(s)	219, 770
BspCNI	CTCAG	1 cut(s)	586
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	3 cut(s)	83, 280, 580
BspT107I	GGYRCC	1 cut(s)	578
BsrDI	GCAATG	2 cut(s)	28, 327
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	3 cut(s)	493, 675, 687
BssMI	GATC	4 cut(s)	259, 504, 699, 871
BssT1I	CCWWGG	1 cut(s)	675
Bst4CI	ACNGT	3 cut(s)	90, 474, 646
Bst6I	CTCTTC	2 cut(s)	533, 609
BstC8I	GCNNGC	4 cut(s)	59, 212, 420, 591
BstDEI	CTNAG	3 cut(s)	594, 657, 764
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	151, 186, 640
BstH2I	RGCGCY	1 cut(s)	493
BstHHI	GCGC	2 cut(s)	492, 745
BstKTI	GATC	4 cut(s)	262, 507, 702, 874
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	4 cut(s)	259, 504, 699, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 63, 72, 216
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	630
BstV1I	GCAGC	6 cut(s)	13, 496, 499, 757, 857, 868
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	2 cut(s)	317, 817
BsuRI	GGCC	2 cut(s)	219, 770
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	151, 186, 640
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 537
Cac8I	GCNNGC	4 cut(s)	59, 212, 420, 591
CciI	TCATGA	1 cut(s)	478
CfoI	GCGC	2 cut(s)	492, 745
Cfr13I	GGNCC	3 cut(s)	81, 278, 768
CseI	GACGC	2 cut(s)	238, 737
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	6 cut(s)	58, 142, 155, 479, 652, 714
CviJI	RGCY	7 cut(s)	66, 214, 219, 556, 593, 770, 848
CviKI_1	RGCY	7 cut(s)	66, 214, 219, 556, 593, 770, 848
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	3 cut(s)	594, 657, 764
DpnI	GATC	4 cut(s)	261, 506, 701, 873
DpnII	GATC	4 cut(s)	259, 504, 699, 871
Eam1104I	CTCTTC	2 cut(s)	533, 609
EarI	CTCTTC	2 cut(s)	533, 609
Eco130I	CCWWGG	1 cut(s)	675
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	81, 278
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	686
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	675
EcoT22I	ATGCAT	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	675
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	6 cut(s)	61, 145, 158, 482, 655, 717
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	6 cut(s)	57, 141, 154, 478, 651, 713
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	7 cut(s)	13, 27, 485, 488, 746, 846, 857
FokI	GGATG	3 cut(s)	158, 173, 647
Fsp4HI	GCNGC	7 cut(s)	13, 27, 485, 488, 746, 846, 857
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	2 cut(s)	491, 744
GluI	GCNGC	7 cut(s)	13, 27, 485, 488, 746, 846, 857
GsaI	CCCAGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	219, 770
HapII	CCGG	1 cut(s)	632
HgaI	GACGC	2 cut(s)	238, 737
HhaI	GCGC	2 cut(s)	492, 745
Hin1II	CATG	6 cut(s)	61, 145, 158, 482, 655, 717
Hin6I	GCGC	2 cut(s)	490, 743
HinP1I	GCGC	2 cut(s)	490, 743
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	5 cut(s)	136, 170, 192, 436, 760
HpaII	CCGG	1 cut(s)	632
HphI	GGTGA	4 cut(s)	187, 509, 523, 677
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	7 cut(s)	191, 259, 363, 520, 560, 759, 823
Hpy188III	TCNNGA	5 cut(s)	235, 479, 611, 686, 729
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	1 cut(s)	232
HpyCH4III	ACNGT	3 cut(s)	90, 474, 646
HpyCH4V	TGCA	5 cut(s)	210, 332, 797, 845, 907
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 63, 72, 216
HpyF3I	CTNAG	3 cut(s)	594, 657, 764
Hsp92II	CATG	6 cut(s)	61, 145, 158, 482, 655, 717
HspAI	GCGC	2 cut(s)	490, 743
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	4 cut(s)	259, 504, 699, 871
LmnI	GCTCC	1 cut(s)	561
LpnPI	CCDG	6 cut(s)	15, 177, 286, 418, 575, 645
Lsp1109I	GCAGC	6 cut(s)	13, 496, 499, 757, 857, 868
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	3 cut(s)	43, 157, 895
MalI	GATC	4 cut(s)	261, 506, 701, 873
MboI	GATC	4 cut(s)	259, 504, 699, 871
MboII	GAAGA	4 cut(s)	254, 520, 626, 793
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	4 cut(s)	284, 839, 908, 916
MmeI	TCCRAC	3 cut(s)	285, 543, 737
MnlI	CCTC	9 cut(s)	100, 142, 230, 281, 314, 536, 545, 591, 682
Mph1103I	ATGCAT	1 cut(s)	799
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	5
MspI	CCGG	1 cut(s)	632
MspR9I	CCNGG	1 cut(s)	632
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	797
MwoI	GCNNNNNNNGC	4 cut(s)	18, 63, 72, 216
NciI	CCSGG	1 cut(s)	632
NdeII	GATC	4 cut(s)	259, 504, 699, 871
NlaIII	CATG	6 cut(s)	61, 145, 158, 482, 655, 717
NlaIV	GGNNCC	3 cut(s)	83, 280, 580
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	61
PagI	TCATGA	1 cut(s)	478
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	5 cut(s)	136, 170, 192, 436, 760
PkrI	GCNGC	7 cut(s)	14, 28, 486, 489, 747, 847, 858
PpuMI	RGGWCCY	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	888
Psp5II	RGGWCCY	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	3 cut(s)	83, 280, 580
PspPI	GGNCC	3 cut(s)	81, 278, 768
PspPPI	RGGWCCY	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
SaqAI	TTAA	1 cut(s)	5
SatI	GCNGC	7 cut(s)	13, 27, 485, 488, 746, 846, 857
Sau3AI	GATC	4 cut(s)	259, 504, 699, 871
Sau96I	GGNCC	3 cut(s)	81, 278, 768
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	342
SinI	GGWCC	2 cut(s)	81, 278
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	4 cut(s)	284, 839, 908, 916
SsiI	CCGC	3 cut(s)	10, 13, 723
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	3 cut(s)	90, 474, 646
TaqI	TCGA	2 cut(s)	728, 870
TasI	AATT	4 cut(s)	284, 839, 908, 916
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	1 cut(s)	15
TfiI	GAWTC	5 cut(s)	136, 170, 192, 436, 760
Tru1I	TTAA	1 cut(s)	5
Tru9I	TTAA	1 cut(s)	5
TscAI	CASTG	2 cut(s)	212, 544
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	6 cut(s)	26, 484, 487, 745, 845, 856
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	6 cut(s)	143, 306, 449, 467, 640, 702
TspRI	CASTG	2 cut(s)	212, 544
VpaK11BI	GGWCC	2 cut(s)	81, 278
XapI	RAATTY	1 cut(s)	839
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.