Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002302.1

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

144121 .. 146727

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002302.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgacaaaagagtttttcctggaatatttgaagagggaaaactcaaagaaaaagcaggtgggtgataattccatagacattcctgaggcaaatgtgattattcagatctcatcacatgctggttcaagacgtcaagaagcacagcgtcttggacgtattttgagggctaagggtagacctcaggatcggattgcaggaggtaaagaggagtacaatgcgttcttttattctcttgtgtcgactgatactcaggagatgtacttttcaactaaacgccagcagtttttgattgatcaaggttatagttttaaggtacatcatattgattccccaaactgtacgagtcagctcttgccccctcctgaatcaggatctgatttgagctatcaccgtcttgatgaccaactggcactactttcaaaggtgttgagtgttggtgatgataaagttggcttagagacactagaagaagaccctgatgagattgcccttcagaaagcacgtcgctcaacaggatccatgactttgatgtcaggcgccaaggggatggtttacatggaatatagtactgaaacgcagaaacacaagcatggcaaagcacagattaagagtactaagcccagggatccggcgaagagacattatttgtttaaacaacgccgtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

222

Amino Acids

25.33

Weight (kDa)

9.35

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
AasI	GACNNNNNNGTC	1 cut(s)	529
AatII	GACGTC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	2 cut(s)	175, 239
AclWI	GGATC	6 cut(s)	192, 379, 510, 523, 620, 633
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	2 cut(s)	130, 537
AfaI	GTAC	6 cut(s)	212, 260, 315, 340, 568, 613
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	31, 126, 267, 420
AjiI	CACGTC	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	18, 620
AluBI	AGCT	2 cut(s)	349, 384
AluI	AGCT	2 cut(s)	349, 384
Alw26I	GTCTC	2 cut(s)	452, 631
AlwI	GGATC	6 cut(s)	192, 379, 510, 523, 620, 633
AlwNI	CAGNNNCTG	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	539
AsuHPI	GGTGA	3 cut(s)	74, 380, 449
AxyI	CCTNAGG	2 cut(s)	84, 180
BamHI	GGATCC	2 cut(s)	515, 625
BanI	GGYRCC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	477
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	645
BciT130I	CCWGG	2 cut(s)	20, 622
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	452, 631
BfaI	CTAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	46
BglII	AGATCT	1 cut(s)	105
BmcAI	AGTACT	2 cut(s)	568, 613
Bme1390I	CCNGG	2 cut(s)	20, 622
BmgBI	CACGTC	1 cut(s)	503
BmiI	GGNNCC	3 cut(s)	517, 538, 627
BmrFI	CCNGG	2 cut(s)	20, 622
BpiI	GAAGAC	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	2 cut(s)	130, 537
BsaJI	CCNNGG	4 cut(s)	540, 620, 621, 661
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	1 cut(s)	411
Bse21I	CCTNAGG	2 cut(s)	84, 180
BseBI	CCWGG	2 cut(s)	20, 622
BseDI	CCNNGG	4 cut(s)	540, 620, 621, 661
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	3 cut(s)	75, 194, 263
BseNI	ACTGG	1 cut(s)	411
BseRI	GAGGAG	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	629
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	452, 631
Bsp143I	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
BspCNI	CTCAG	3 cut(s)	76, 193, 262
BspLI	GGNNCC	3 cut(s)	517, 538, 627
BspMI	ACCTGC	1 cut(s)	46
BspPI	GGATC	6 cut(s)	192, 379, 510, 523, 620, 633
BspT107I	GGYRCC	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	411
BssECI	CCNNGG	4 cut(s)	540, 620, 621, 661
BssMI	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
BssNI	GRCGYC	2 cut(s)	130, 537
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	20, 622
Bst4CI	ACNGT	2 cut(s)	338, 392
Bst6I	CTCTTC	2 cut(s)	26, 629
BstACI	GRCGYC	2 cut(s)	130, 537
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	6 cut(s)	84, 168, 180, 249, 454, 615
BstDSI	CCRYGG	1 cut(s)	661
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	552
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	1 cut(s)	539
BstKTI	GATC	6 cut(s)	108, 187, 295, 374, 518, 628
BstMAI	GTCTC	2 cut(s)	452, 631
BstMBI	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
BstNI	CCWGG	2 cut(s)	20, 622
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	18, 620
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	4 cut(s)	105, 371, 515, 625
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	4 cut(s)	105, 371, 515, 625
Bsu36I	CCTNAGG	2 cut(s)	84, 180
BtgI	CCRYGG	1 cut(s)	661
BtrI	CACGTC	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	374
CfoI	GCGC	1 cut(s)	539
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	6 cut(s)	211, 259, 314, 339, 567, 612
CviAII	CATG	4 cut(s)	116, 520, 556, 590
CviJI	RGCY	6 cut(s)	167, 349, 384, 453, 619, 666
CviKI_1	RGCY	6 cut(s)	167, 349, 384, 453, 619, 666
CviQI	GTAC	6 cut(s)	211, 259, 314, 339, 567, 612
DdeI	CTNAG	6 cut(s)	84, 168, 180, 249, 454, 615
DinI	GGCGCC	1 cut(s)	538
DpnI	GATC	6 cut(s)	107, 186, 294, 373, 517, 627
DpnII	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
DraI	TTTAAA	1 cut(s)	652
DrdI	GACNNNNNNGTC	1 cut(s)	529
DseDI	GACNNNNNNGTC	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	26, 629
EarI	CTCTTC	2 cut(s)	26, 629
Eco130I	CCWWGG	1 cut(s)	540
Eco57I	CTGAAG	1 cut(s)	476
Eco81I	CCTNAGG	2 cut(s)	84, 180
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	18, 620
EcoT14I	CCWWGG	1 cut(s)	540
EgeI	GGCGCC	1 cut(s)	538
EheI	GGCGCC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	4 cut(s)	119, 523, 559, 593
FaiI	YATR	8 cut(s)	74, 117, 303, 321, 521, 557, 564, 591
FatI	CATG	4 cut(s)	115, 519, 555, 589
FbaI	TGATCA	1 cut(s)	292
FblI	GTMKAC	2 cut(s)	175, 239
FokI	GGATG	1 cut(s)	559
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	538
HaeII	RGCGCY	1 cut(s)	540
HapII	CCGG	1 cut(s)	629
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	539
Hin1I	GRCGYC	2 cut(s)	130, 537
Hin1II	CATG	4 cut(s)	119, 523, 559, 593
Hin6I	GCGC	1 cut(s)	537
HinP1I	GCGC	1 cut(s)	537
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	3 cut(s)	326, 343, 365
HpaII	CCGG	1 cut(s)	629
HphI	GGTGA	3 cut(s)	74, 380, 449
Hpy166II	GTNNAC	3 cut(s)	176, 240, 553
Hpy188I	TCNGA	4 cut(s)	105, 189, 376, 495
Hpy188III	TCNNGA	8 cut(s)	83, 126, 134, 182, 251, 362, 369, 395
Hpy8I	GTNNAC	3 cut(s)	176, 240, 553
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	2 cut(s)	338, 392
HpyCH4IV	ACGT	3 cut(s)	130, 154, 502
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	6 cut(s)	84, 168, 180, 249, 454, 615
HpySE526I	ACGT	3 cut(s)	130, 154, 502
Hsp92I	GRCGYC	2 cut(s)	130, 537
Hsp92II	CATG	4 cut(s)	119, 523, 559, 593
HspAI	GCGC	1 cut(s)	537
KasI	GGCGCC	1 cut(s)	536
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	3 cut(s)	130, 154, 502
MalI	GATC	6 cut(s)	107, 186, 294, 373, 517, 627
MboI	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
MboII	GAAGA	4 cut(s)	43, 479, 482, 646
MflI	RGATCY	4 cut(s)	105, 371, 515, 625
MluCI	AATT	1 cut(s)	67
Mly113I	GGCGCC	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	352
MnlI	CCTC	7 cut(s)	27, 79, 156, 189, 191, 199, 369
MseI	TTAA	3 cut(s)	309, 606, 651
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	1 cut(s)	629
MspR9I	CCNGG	2 cut(s)	20, 622
MssI	GTTTAAAC	1 cut(s)	652
MvaI	CCWGG	2 cut(s)	20, 622
NarI	GGCGCC	1 cut(s)	537
NdeII	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
NlaIII	CATG	4 cut(s)	119, 523, 559, 593
NlaIV	GGNNCC	3 cut(s)	517, 538, 627
NspI	RCATGY	1 cut(s)	119
PaqCI	CACCTGC	1 cut(s)	46
PasI	CCCWGGG	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	326, 365
PfoI	TCCNGGA	1 cut(s)	18
PleI	GAGTC	1 cut(s)	351
PluTI	GGCGCC	1 cut(s)	540
PmeI	GTTTAAAC	1 cut(s)	652
PpsI	GAGTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	18, 620
PspGI	CCWGG	2 cut(s)	18, 620
PspN4I	GGNNCC	3 cut(s)	517, 538, 627
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
PstNI	CAGNNNCTG	1 cut(s)	374
PsuI	RGATCY	4 cut(s)	105, 371, 515, 625
RsaI	GTAC	6 cut(s)	212, 260, 315, 340, 568, 613
RsaNI	GTAC	6 cut(s)	211, 259, 314, 339, 567, 612
RseI	CAYNNNNRTG	1 cut(s)	588
SalI	GTCGAC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	309, 606, 651
Sau3AI	GATC	6 cut(s)	105, 184, 292, 371, 515, 625
ScaI	AGTACT	2 cut(s)	568, 613
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	20, 622
SfoI	GGCGCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	588
Sse9I	AATT	1 cut(s)	67
SspDI	GGCGCC	1 cut(s)	536
SspI	AATATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	18, 620
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	338, 392
TaiI	ACGT	3 cut(s)	133, 157, 505
TaqI	TCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	67
TatI	WGTACW	4 cut(s)	210, 258, 566, 611
TfiI	GAWTC	2 cut(s)	326, 365
Tru1I	TTAA	3 cut(s)	309, 606, 651
Tru9I	TTAA	3 cut(s)	309, 606, 651
XagI	CCTNNNNNAGG	1 cut(s)	366
XceI	RCATGY	1 cut(s)	119
XmiI	GTMKAC	2 cut(s)	175, 239
XspI	CTAG	1 cut(s)	464
ZraI	GACGTC	1 cut(s)	131
ZrmI	AGTACT	2 cut(s)	568, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.