Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

13514634 .. 13520251

Gene Structure 5618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGGGACACGGTGATAAAGGAGGCAGACCCAGTAAAAAACCCAAATTCTCCGCCAAGGAAATTGCTCACGTGGAAGACGACGACCCATATTACGGCGGCGAAGATGTCGACGATGATCCTCGCGACGGTGAAGGGAAAAAGAGGGATTTTACCAAATTAGAACTGAAACCTGACCACGCCAATCGGCCTTTATGGGCTTGCGCTGATGGCCGGATATTCCTCGAAACCTTCTCTGCTTTGTACAAACAAGCTTATGATTTCCTAATTGCCATTGCGGAACCCGTTTGCAGGCCAGAGTCGATGCACGAGTACAATTTGACCCCACATTCGTTGTACGCGGCTGTGTCAGTCGGTCTTGAGACAGAAACCATCATTTCTGTTTTGAATAAACTGTCAAAGACCAAGCTCCCTAAAGAAATGATTGAATTTATACACGGTTCTACTGCCAATTACGGCAAAGTGAAGCTCGTGCTTAAGAAGAATAAGTATTTTGTCGAATCCCCATTCCCAGAGGTATTGAAGACATTGCTTAAGGACGAAGTTATATCTAGAGCAAGGCTTAACTCTGAGGGTTCTCGTGGAGTTGATGATTTTACCATTAGCAAAACAATGGGTGAAATTGGAGCTGGTCCCAGTGATTTGCTAAATGAAGCAGAACTGGCAGCTGCAGCTGAAGAAAAAGAAACTCATGCATTTGAAATTGATCCTTCACAGGTTGAAAATGTTAAGGAACGTTGCTTGCCAAATGCTTTGAACTATCCCATGTTGGAGGAGTATGACTTCAGAAATGATACAGTTAACCCTGATCTAGATATGGAACTAAAGCCTCAGGCTCAACCACGACCTTATCAGGAGAAGAGCTTGAGTAAAATGTTTGGGAATGGGAGAGCAAGATCTGGCATTATTGTGCTACCCTGTGGTGCCGGAAAATCTCTAGTTGGTGTTTCTGCAGCTTCCCGGATAAGAAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTCTCTGTTGATCAGTGGGCCTTTCAGTTCAAGTTGTGGTCAACCATCCGCGATGATCAAATTTGTCGTTTCACATCTGATAGTAAAGAAAGGTTCCGTGGAAATGCTGGGGTGGTTGTAACAACATATAACATGGTTGCCTTTGGTGGAAAGAGGTCAGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAATAGAGAATGGGGATTGCTTCTCATGGACGAGGTGCACGTTGTTCCTGCTCAAATGTTTCGGAAGGTCATTAGCATTACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAGGATGAGAGGATCACAGATTTGAACTTCCTTATTGGTCCGAAATTGTATGAAGCAAACTGGTTGGATTTGGTAAAAGGTGGATTTATTGCAAATGTACAGTGCGCTGAAGTATGGTGTCCAATGACAAAAGAGTTCTTTGCAGAATATTTGAAGAAAGAGAACTCCAAGAAAAAGCAGGCACTTTATGTGATGAATCCAAATAAGTTTAGGGCATGCGAGTTTCTTATACGTTTCCATGAACAGCAACGTGGAGATAAAATTATTGTCTTTGCTGACAATCTTTTTGCACTAGTGGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGTGCCACCAGCCATGTGGAGAGGACAAAAATCCTAGAAGCTTTTAAAACAAGTCGTGACGTAAACACTATATTCCTGTCTAAGGTAGGTGATAATTCCATAGACATTCCGGAGGCAAATGTGATAATTCAGATTTCGTCGCATGCTGGTTCAAGACGTCAAGAAGCGCAGCGTCTTGGTCGTATTCTGAGGGCTAAGGGTAGACTTCAGGACCGGATGGCAGGAGGTAAAGAGGAGTACAATGCATTCTTTTATTCCCTCGTATCGATGGACACACAGGAAATGTACTATTCAACTAAGCGGCAGCAGTTTTTGATTGATCAAGGTTATAGTTTCAAGATTATTACAAGCTTGCCCCCGCCTGATTCAGGCCCAGAATTGAACTACCACCATCTTAATGACCAACTGTCACTACTCTCCAAGGTGTTGAGTGCTGGTGATGATGCAGTTGGTTTGGAGCAACTAGAAGAAGACGCCGATGACATTGCCCTTCATAAAGCTCGCCGTTTCAGTGGATCCATGAGTGCTATGTCGGGTGCAAATGGGATGGTTTACATGGAATACAGCACTGGGAGAAACAAATTTGGCAAAGGCCAGATCAAGGGTAAGCCCAAGGATCCAGCCAAGCGACATCATTTGTTTAAAAAACGCTTTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

768

Amino Acids

86.59

Weight (kDa)

8.24

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1804
AccB1I	GGYRCC	2 cut(s)	920, 1646
AccI	GTMKAC	2 cut(s)	108, 1846
AccII	CGCG	3 cut(s)	123, 338, 1047
AccIII	TCCGGA	1 cut(s)	1753
AciI	CCGC	7 cut(s)	51, 96, 275, 338, 1045, 1945, 2003
AclI	AACGTT	1 cut(s)	733
AclWI	GGATC	7 cut(s)	110, 698, 1331, 2154, 2167, 2255, 2268
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	4 cut(s)	44, 425, 1056, 2225
AcuI	CTGAAG	4 cut(s)	693, 766, 1440, 1835
AcvI	CACGTG	1 cut(s)	70
AcyI	GRCGYC	2 cut(s)	1801, 2118
AfaI	GTAC	6 cut(s)	242, 311, 335, 1410, 1883, 1931
AfiI	CCNNNNNNNGG	6 cut(s)	92, 125, 288, 1726, 2012, 2245
AflII	CTTAAG	2 cut(s)	473, 530
AhdI	GACNNNNNGTC	1 cut(s)	2050
AhlI	ACTAGT	1 cut(s)	1603
AleI	CACNNNNGTG	1 cut(s)	1304
Alw21I	GWGCWC	1 cut(s)	1227
Alw26I	GTCTC	3 cut(s)	353, 1003, 1278
Alw44I	GTGCAC	1 cut(s)	1223
AlwI	GGATC	7 cut(s)	110, 698, 1331, 2154, 2167, 2255, 2268
Aor13HI	TCCGGA	1 cut(s)	1753
AoxI	GGCC	6 cut(s)	185, 208, 290, 1014, 2014, 2236
ApaLI	GTGCAC	1 cut(s)	1223
ApeKI	GCWGC	7 cut(s)	662, 665, 668, 950, 972, 1813, 1948
ApoI	RAATTY	4 cut(s)	44, 425, 1056, 2225
ArsI	GACNNNNNNTTYG	4 cut(s)	310, 342, 1580, 1612
AspLEI	GCGC	3 cut(s)	203, 1418, 1813
AspS9I	GGNCC	5 cut(s)	629, 1014, 1349, 1855, 2015
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	5 cut(s)	23, 140, 626, 1745, 2093
AvaII	GGWCC	3 cut(s)	629, 1349, 1855
AxyI	CCTNAGG	1 cut(s)	828
BaeGI	GKGCMC	1 cut(s)	1227
BamHI	GGATCC	2 cut(s)	2159, 2260
BanI	GGYRCC	2 cut(s)	920, 1646
BanII	GRGCYC	1 cut(s)	1293
BauI	CACGAG	3 cut(s)	305, 467, 576
BbrPI	CACGTG	1 cut(s)	70
BbsI	GAAGAC	3 cut(s)	81, 527, 2121
Bbv12I	GWGCWC	1 cut(s)	1227
BbvI	GCAGC	7 cut(s)	652, 674, 680, 959, 962, 1825, 1960
BccI	CCATC	7 cut(s)	200, 377, 1049, 1855, 1906, 2043, 2185
BceAI	ACGGC	3 cut(s)	109, 469, 2133
BcgI	CGANNNNNNTGC	2 cut(s)	2111, 2145
BclI	TGATCA	3 cut(s)	1006, 1051, 1963
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	3 cut(s)	353, 1003, 1278
BcuI	ACTAGT	1 cut(s)	1603
BfaI	CTAG	6 cut(s)	549, 809, 935, 1604, 1679, 2108
BfmI	CTRYAG	2 cut(s)	666, 948
BfrI	CTTAAG	2 cut(s)	473, 530
BglII	AGATCT	1 cut(s)	893
Bme1390I	CCNGG	1 cut(s)	958
Bme18I	GGWCC	3 cut(s)	629, 1349, 1855
BmeRI	GACNNNNNGTC	1 cut(s)	2050
BmgT120I	GGNCC	5 cut(s)	629, 1014, 1349, 1855, 2015
BmiI	GGNNCC	7 cut(s)	279, 631, 922, 1091, 1648, 2161, 2262
BmrFI	CCNGG	1 cut(s)	958
BmrI	ACTGGG	3 cut(s)	24, 627, 2223
BmsI	GCATC	2 cut(s)	291, 2077
BmuI	ACTGGG	3 cut(s)	24, 627, 2223
BpiI	GAAGAC	3 cut(s)	81, 527, 2121
Bpu10I	CCTNAGC	1 cut(s)	1839
BpuEI	CTTGAG	2 cut(s)	377, 883
BpuMI	CCSGG	1 cut(s)	958
Bsa29I	ATCGAT	1 cut(s)	1910
BsaAI	YACGTR	1 cut(s)	70
BsaHI	GRCGYC	2 cut(s)	1801, 2118
BsaJI	CCNNGG	4 cut(s)	54, 1093, 2064, 2256
BsaWI	WCCGGW	2 cut(s)	1753, 1857
Bsc4I	CCNNNNNNNGG	6 cut(s)	92, 125, 288, 1726, 2012, 2245
Bse1I	ACTGG	5 cut(s)	30, 633, 663, 1376, 2218
Bse21I	CCTNAGG	1 cut(s)	828
Bse3DI	GCAATG	4 cut(s)	270, 524, 1623, 2127
BseAI	TCCGGA	1 cut(s)	1753
BseCI	ATCGAT	1 cut(s)	1910
BseDI	CCNNGG	4 cut(s)	54, 1093, 2064, 2256
BseGI	GGATG	4 cut(s)	1041, 1321, 1866, 2196
BseLI	CCNNNNNNNGG	6 cut(s)	92, 125, 288, 1726, 2012, 2245
BseMI	GCAATG	4 cut(s)	270, 524, 1623, 2127
BseMII	CTCAG	3 cut(s)	558, 842, 1823
BseNI	ACTGG	5 cut(s)	30, 633, 663, 1376, 2218
BseRI	GAGGAG	2 cut(s)	785, 1892
BseSI	GKGCMC	1 cut(s)	1227
BseXI	GCAGC	7 cut(s)	652, 674, 680, 959, 962, 1825, 1960
BseYI	CCCAGC	1 cut(s)	1103
Bsh1236I	CGCG	3 cut(s)	123, 338, 1047
BshFI	GGCC	6 cut(s)	187, 210, 292, 1016, 2016, 2238
BshNI	GGYRCC	2 cut(s)	920, 1646
BshVI	ATCGAT	1 cut(s)	1910
BsiHKAI	GWGCWC	1 cut(s)	1227
BsiSI	CCGG	5 cut(s)	211, 924, 958, 1754, 1858
BslFI	GGGAC	2 cut(s)	18, 615
BslI	CCNNNNNNNGG	6 cut(s)	92, 125, 288, 1726, 2012, 2245
BsmAI	GTCTC	3 cut(s)	353, 1003, 1278
BsmFI	GGGAC	2 cut(s)	18, 615
BsmI	GAATGC	1 cut(s)	1889
BsnI	GGCC	6 cut(s)	187, 210, 292, 1016, 2016, 2238
Bsp1286I	GDGCHC	2 cut(s)	1227, 1293
Bsp13I	TCCGGA	1 cut(s)	1753
Bsp1407I	TGTACA	2 cut(s)	240, 1408
Bsp68I	TCGCGA	1 cut(s)	123
BspACI	CCGC	7 cut(s)	51, 96, 275, 338, 1045, 1945, 2003
BspANI	GGCC	6 cut(s)	187, 210, 292, 1016, 2016, 2238
BspCNI	CTCAG	3 cut(s)	559, 841, 1824
BspDI	ATCGAT	1 cut(s)	1910
BspEI	TCCGGA	1 cut(s)	1753
BspFNI	CGCG	3 cut(s)	123, 338, 1047
BspLI	GGNNCC	7 cut(s)	279, 631, 922, 1091, 1648, 2161, 2262
BspMAI	CTGCAG	2 cut(s)	670, 952
BspPI	GGATC	7 cut(s)	110, 698, 1331, 2154, 2167, 2255, 2268
BspQI	GCTCTTC	1 cut(s)	851
BspT107I	GGYRCC	2 cut(s)	920, 1646
BspTI	CTTAAG	2 cut(s)	473, 530
BsrDI	GCAATG	4 cut(s)	270, 524, 1623, 2127
BsrGI	TGTACA	2 cut(s)	240, 1408
BsrI	ACTGG	5 cut(s)	30, 633, 663, 1376, 2218
BssECI	CCNNGG	4 cut(s)	54, 1093, 2064, 2256
BssNI	GRCGYC	2 cut(s)	1801, 2118
BssSI	CACGAG	3 cut(s)	305, 467, 576
BssT1I	CCWWGG	3 cut(s)	54, 2064, 2256
Bst2BI	CACGAG	3 cut(s)	305, 467, 576
Bst4CI	ACNGT	7 cut(s)	11, 128, 393, 437, 796, 1413, 2052
Bst6I	CTCTTC	1 cut(s)	851
BstACI	GRCGYC	2 cut(s)	1801, 2118
BstAFI	CTTAAG	2 cut(s)	473, 530
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstAUI	TGTACA	2 cut(s)	240, 1408
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	9 cut(s)	199, 290, 740, 1283, 1491, 1528, 1788, 1997, 2146
BstDEI	CTNAG	7 cut(s)	567, 828, 1269, 1725, 1832, 1839, 1941
BstDSI	CCRYGG	1 cut(s)	1093
BstENI	CCTNNNNNAGG	2 cut(s)	1724, 2010
BstF5I	GGATG	4 cut(s)	1041, 1321, 1866, 2196
BstFNI	CGCG	3 cut(s)	123, 338, 1047
BstHHI	GCGC	3 cut(s)	203, 1418, 1813
BstMAI	GTCTC	3 cut(s)	353, 1003, 1278
BstMWI	GCNNNNNNNGC	4 cut(s)	207, 659, 668, 992
BstNSI	RCATGY	2 cut(s)	1530, 1790
BstSCI	CCNGG	1 cut(s)	956
BstSFI	CTRYAG	2 cut(s)	666, 948
BstSLI	GKGCMC	1 cut(s)	1227
BstUI	CGCG	3 cut(s)	123, 338, 1047
BstV1I	GCAGC	7 cut(s)	652, 674, 680, 959, 962, 1825, 1960
BstV2I	GAAGAC	3 cut(s)	81, 527, 2121
BstX2I	RGATCY	3 cut(s)	893, 2159, 2260
BstXI	CCANNNNNNTGG	1 cut(s)	1660
BstYI	RGATCY	3 cut(s)	893, 2159, 2260
Bsu15I	ATCGAT	1 cut(s)	1910
Bsu36I	CCTNAGG	1 cut(s)	828
BsuRI	GGCC	6 cut(s)	187, 210, 292, 1016, 2016, 2238
BsuTUI	ATCGAT	1 cut(s)	1910
BtgI	CCRYGG	1 cut(s)	1093
BtgZI	GCGATG	1 cut(s)	1062
BtsCI	GGATG	4 cut(s)	1041, 1321, 1866, 2196
BtsI	GCAGTG	2 cut(s)	1276, 1293
BtsIMutI	CAGTG	7 cut(s)	640, 1016, 1276, 1293, 1418, 2161, 2211
BtuMI	TCGCGA	1 cut(s)	123
Cac8I	GCNNGC	9 cut(s)	199, 290, 740, 1283, 1491, 1528, 1788, 1997, 2146
CfoI	GCGC	3 cut(s)	203, 1418, 1813
Cfr13I	GGNCC	5 cut(s)	629, 1014, 1349, 1855, 2015
ClaI	ATCGAT	1 cut(s)	1910
CseI	GACGC	2 cut(s)	1805, 2126
Csp6I	GTAC	6 cut(s)	241, 310, 334, 1409, 1882, 1930
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviQI	GTAC	6 cut(s)	241, 310, 334, 1409, 1882, 1930
DdeI	CTNAG	7 cut(s)	567, 828, 1269, 1725, 1832, 1839, 1941
DraI	TTTAAA	2 cut(s)	1690, 2287
DriI	GACNNNNNGTC	1 cut(s)	2050
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	851
Eam1105I	GACNNNNNGTC	1 cut(s)	2050
EarI	CTCTTC	1 cut(s)	851
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	3 cut(s)	54, 2064, 2256
Eco24I	GRGCYC	1 cut(s)	1293
Eco47I	GGWCC	3 cut(s)	629, 1349, 1855
Eco57I	CTGAAG	4 cut(s)	693, 766, 1440, 1835
Eco72I	CACGTG	1 cut(s)	70
Eco81I	CCTNAGG	1 cut(s)	828
EcoNI	CCTNNNNNAGG	2 cut(s)	1724, 2010
EcoT14I	CCWWGG	3 cut(s)	54, 2064, 2256
EcoT22I	ATGCAT	2 cut(s)	694, 1891
EcoT38I	GRGCYC	1 cut(s)	1293
ErhI	CCWWGG	3 cut(s)	54, 2064, 2256
FaqI	GGGAC	2 cut(s)	18, 615
FauI	CCCGC	1 cut(s)	2010
FbaI	TGATCA	3 cut(s)	1006, 1051, 1963
FblI	GTMKAC	2 cut(s)	108, 1846
FokI	GGATG	4 cut(s)	1028, 1328, 1873, 2203
FriOI	GRGCYC	1 cut(s)	1293
FspBI	CTAG	6 cut(s)	549, 809, 935, 1604, 1679, 2108
GlaI	GCGC	3 cut(s)	202, 1417, 1812
GsaI	CCCAGC	1 cut(s)	1107
HaeIII	GGCC	6 cut(s)	187, 210, 292, 1016, 2016, 2238
HapII	CCGG	5 cut(s)	211, 924, 958, 1754, 1858
HgaI	GACGC	2 cut(s)	1805, 2126
HhaI	GCGC	3 cut(s)	203, 1418, 1813
Hin1I	GRCGYC	2 cut(s)	1801, 2118
Hin6I	GCGC	3 cut(s)	201, 1416, 1811
HinP1I	GCGC	3 cut(s)	201, 1416, 1811
HincII	GTYRAC	3 cut(s)	109, 799, 1038
HindII	GTYRAC	3 cut(s)	109, 799, 1038
HindIII	AAGCTT	4 cut(s)	249, 1283, 1683, 1993
HinfI	GANTC	5 cut(s)	296, 497, 1160, 1507, 2009
HpaI	GTTAAC	1 cut(s)	799
HpaII	CCGG	5 cut(s)	211, 924, 958, 1754, 1858
HphI	GGTGA	5 cut(s)	23, 140, 626, 1745, 2093
Hpy166II	GTNNAC	7 cut(s)	109, 799, 1038, 1225, 1708, 1847, 2197
Hpy8I	GTNNAC	7 cut(s)	109, 799, 1038, 1225, 1708, 1847, 2197
Hpy99I	CGWCG	4 cut(s)	83, 113, 128, 1786
HpyAV	CCTTC	5 cut(s)	125, 238, 717, 1246, 2144
HpyCH4III	ACNGT	7 cut(s)	11, 128, 393, 437, 796, 1413, 2052
HpyCH4IV	ACGT	7 cut(s)	69, 733, 1227, 1543, 1561, 1704, 1801
HpyF10VI	GCNNNNNNNGC	4 cut(s)	207, 659, 668, 992
HpyF3I	CTNAG	7 cut(s)	567, 828, 1269, 1725, 1832, 1839, 1941
HpySE526I	ACGT	7 cut(s)	69, 733, 1227, 1543, 1561, 1704, 1801
Hsp92I	GRCGYC	2 cut(s)	1801, 2118
HspAI	GCGC	3 cut(s)	201, 1416, 1811
Kpn2I	TCCGGA	1 cut(s)	1753
Ksp22I	TGATCA	3 cut(s)	1006, 1051, 1963
KspAI	GTTAAC	1 cut(s)	799
LguI	GCTCTTC	1 cut(s)	851
LmnI	GCTCC	3 cut(s)	411, 623, 2101
Lsp1109I	GCAGC	7 cut(s)	652, 674, 680, 959, 962, 1825, 1960
LweI	GCATC	2 cut(s)	291, 2077
MaeI	CTAG	6 cut(s)	549, 809, 935, 1604, 1679, 2108
MaeII	ACGT	7 cut(s)	69, 733, 1227, 1543, 1561, 1704, 1801
MaeIII	GTNAC	3 cut(s)	1114, 1700, 2052
MflI	RGATCY	3 cut(s)	893, 2159, 2260
MhlI	GDGCHC	2 cut(s)	1227, 1293
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	747, 1356
Mph1103I	ATGCAT	2 cut(s)	694, 1891
MroI	TCCGGA	1 cut(s)	1753
MseI	TTAA	8 cut(s)	474, 531, 561, 726, 798, 1689, 2040, 2286
MslI	CAYNNNNRTG	3 cut(s)	905, 1304, 2040
MspA1I	CMGCKG	2 cut(s)	665, 671
MspCI	CTTAAG	2 cut(s)	473, 530
MspI	CCGG	5 cut(s)	211, 924, 958, 1754, 1858
MspR9I	CCNGG	1 cut(s)	958
Mva1269I	GAATGC	1 cut(s)	1889
MvnI	CGCG	3 cut(s)	123, 338, 1047
MwoI	GCNNNNNNNGC	4 cut(s)	207, 659, 668, 992
NciI	CCSGG	1 cut(s)	958
NlaIV	GGNNCC	7 cut(s)	279, 631, 922, 1091, 1648, 2161, 2262
NmuCI	GTSAC	2 cut(s)	1700, 2052
NruI	TCGCGA	1 cut(s)	123
NsiI	ATGCAT	2 cut(s)	694, 1891
NspI	RCATGY	2 cut(s)	1530, 1790
OliI	CACNNNNGTG	1 cut(s)	1304
PaeI	GCATGC	2 cut(s)	1530, 1790
PciSI	GCTCTTC	1 cut(s)	851
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 1224
PctI	GAATGC	1 cut(s)	1889
PfeI	GAWTC	4 cut(s)	497, 1160, 1507, 2009
PfoI	TCCNGGA	1 cut(s)	956
PleI	GAGTC	1 cut(s)	304
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	70
Psp1406I	AACGTT	1 cut(s)	733
PspCI	CACGTG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	1103
PspN4I	GGNNCC	7 cut(s)	279, 631, 922, 1091, 1648, 2161, 2262
PspPI	GGNCC	5 cut(s)	629, 1014, 1349, 1855, 2015
PstI	CTGCAG	2 cut(s)	670, 952
PsuI	RGATCY	3 cut(s)	893, 2159, 2260
PvuII	CAGCTG	2 cut(s)	665, 671
RruI	TCGCGA	1 cut(s)	123
RsaI	GTAC	6 cut(s)	242, 311, 335, 1410, 1883, 1931
RsaNI	GTAC	6 cut(s)	241, 310, 334, 1409, 1882, 1930
RseI	CAYNNNNRTG	3 cut(s)	905, 1304, 2040
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	8 cut(s)	474, 531, 561, 726, 798, 1689, 2040, 2286
Sau96I	GGNCC	5 cut(s)	629, 1014, 1349, 1855, 2015
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	958
SduI	GDGCHC	2 cut(s)	1227, 1293
SfaNI	GCATC	2 cut(s)	291, 2077
SfcI	CTRYAG	2 cut(s)	666, 948
SinI	GGWCC	3 cut(s)	629, 1349, 1855
SmiMI	CAYNNNNRTG	3 cut(s)	905, 1304, 2040
SmlI	CTYRAG	4 cut(s)	356, 473, 530, 862
SmoI	CTYRAG	4 cut(s)	356, 473, 530, 862
SpeI	ACTAGT	1 cut(s)	1603
SphI	GCATGC	2 cut(s)	1530, 1790
SsiI	CCGC	7 cut(s)	51, 96, 275, 338, 1045, 1945, 2003
SspI	AATATT	1 cut(s)	1460
SspMI	CTAG	6 cut(s)	549, 809, 935, 1604, 1679, 2108
StyD4I	CCNGG	1 cut(s)	956
StyI	CCWWGG	3 cut(s)	54, 2064, 2256
TaaI	ACNGT	7 cut(s)	11, 128, 393, 437, 796, 1413, 2052
TaiI	ACGT	7 cut(s)	72, 736, 1230, 1546, 1564, 1707, 1804
TaqI	TCGA	5 cut(s)	108, 222, 299, 495, 1910
TaqII	GACCGA	1 cut(s)	341
TatI	WGTACW	5 cut(s)	240, 309, 1408, 1881, 1929
TauI	GCSGC	3 cut(s)	99, 341, 1948
TfiI	GAWTC	4 cut(s)	497, 1160, 1507, 2009
Tru1I	TTAA	8 cut(s)	474, 531, 561, 726, 798, 1689, 2040, 2286
Tru9I	TTAA	8 cut(s)	474, 531, 561, 726, 798, 1689, 2040, 2286
TscAI	CASTG	7 cut(s)	640, 1016, 1283, 1300, 1418, 2161, 2218
TseFI	GTSAC	2 cut(s)	1700, 2052
TseI	GCWGC	7 cut(s)	662, 665, 668, 950, 972, 1813, 1948
Tsp45I	GTSAC	2 cut(s)	1700, 2052
TspDTI	ATGAA	6 cut(s)	663, 1377, 1520, 1566, 1634, 2126
TspGWI	ACGGA	1 cut(s)	1082
TspRI	CASTG	7 cut(s)	640, 1016, 1283, 1300, 1418, 2161, 2218
Vha464I	CTTAAG	2 cut(s)	473, 530
VneI	GTGCAC	1 cut(s)	1223
VpaK11BI	GGWCC	3 cut(s)	629, 1349, 1855
XagI	CCTNNNNNAGG	2 cut(s)	1724, 2010
XapI	RAATTY	4 cut(s)	44, 425, 1056, 2225
XbaI	TCTAGA	2 cut(s)	548, 808
XceI	RCATGY	2 cut(s)	1530, 1790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1657
XmiI	GTMKAC	2 cut(s)	108, 1846
XspI	CTAG	6 cut(s)	549, 809, 935, 1604, 1679, 2108
ZraI	GACGTC	1 cut(s)	1802
Zsp2I	ATGCAT	2 cut(s)	694, 1891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.