Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8328521.1

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

376 .. 882

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8328521.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ctggcactactttcaaaggtgttgagtgttggtgatgataaagttggcttagagacactagaagaagaccctgatgagattgcccttcagaaagcacgtcgctcaacaggatccatgagtttgatgtcaggcgccaaggggatggtttacatggaatatagtactgaaacgcagaaacacaagcatggcaaagcacagattaagagtactaagcccagggatccggcgaagagacattatttgtttaaacaacgccgtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

87

Amino Acids

9.76

Weight (kDa)

9.74

Isoelectric Point (pI)

58.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AclWI	GGATC	4 cut(s)	105, 118, 215, 228
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	163, 208
AgsI	TTSAA	1 cut(s)	15
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	47, 226
AlwI	GGATC	4 cut(s)	105, 118, 215, 228
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	44
BamHI	GGATCC	2 cut(s)	110, 220
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	47, 226
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	135
BmcAI	AGTACT	2 cut(s)	163, 208
Bme1390I	CCNGG	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	112, 133, 222
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	4 cut(s)	135, 215, 216, 256
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	4 cut(s)	135, 215, 216, 256
BseGI	GGATG	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	47, 226
Bsp143I	GATC	2 cut(s)	110, 220
BspLI	GGNNCC	3 cut(s)	112, 133, 222
BspPI	GGATC	4 cut(s)	105, 118, 215, 228
BspT107I	GGYRCC	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	135, 215, 216, 256
BssMI	GATC	2 cut(s)	110, 220
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	224
BstACI	GRCGYC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	49, 210
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	113, 223
BstMAI	GTCTC	2 cut(s)	47, 226
BstMBI	GATC	2 cut(s)	110, 220
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	110, 220
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstYI	RGATCY	2 cut(s)	110, 220
BtgI	CCRYGG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	162, 207
CviAII	CATG	3 cut(s)	115, 151, 185
CviJI	RGCY	3 cut(s)	48, 214, 261
CviKI_1	RGCY	3 cut(s)	48, 214, 261
CviQI	GTAC	2 cut(s)	162, 207
DdeI	CTNAG	2 cut(s)	49, 210
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	112, 222
DpnII	GATC	2 cut(s)	110, 220
DraI	TTTAAA	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	118, 154, 188
FaiI	YATR	4 cut(s)	116, 152, 159, 186
FatI	CATG	3 cut(s)	114, 150, 184
FokI	GGATG	1 cut(s)	154
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	133
HaeII	RGCGCY	1 cut(s)	135
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	118, 154, 188
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	49, 210
HpySE526I	ACGT	1 cut(s)	97
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	118, 154, 188
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	110, 220
LpnPI	CCDG	6 cut(s)	84, 93, 114, 202, 229, 237
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	1 cut(s)	97
MalI	GATC	2 cut(s)	112, 222
MboI	GATC	2 cut(s)	110, 220
MboII	GAAGA	3 cut(s)	74, 77, 241
MflI	RGATCY	2 cut(s)	110, 220
Mly113I	GGCGCC	1 cut(s)	132
MseI	TTAA	2 cut(s)	201, 246
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	217
MssI	GTTTAAAC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	110, 220
NlaIII	CATG	3 cut(s)	118, 154, 188
NlaIV	GGNNCC	3 cut(s)	112, 133, 222
PasI	CCCWGGG	1 cut(s)	216
PluTI	GGCGCC	1 cut(s)	135
PmeI	GTTTAAAC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	112, 133, 222
PsuI	RGATCY	2 cut(s)	110, 220
RsaI	GTAC	2 cut(s)	163, 208
RsaNI	GTAC	2 cut(s)	162, 207
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	201, 246
Sau3AI	GATC	2 cut(s)	110, 220
ScaI	AGTACT	2 cut(s)	163, 208
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	2 cut(s)	21, 100
SfoI	GGCGCC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	183
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	100
TatI	WGTACW	2 cut(s)	161, 206
Tru1I	TTAA	2 cut(s)	201, 246
Tru9I	TTAA	2 cut(s)	201, 246
XspI	CTAG	1 cut(s)	59
ZrmI	AGTACT	2 cut(s)	163, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.