Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

31604819 .. 31612343

Gene Structure 7525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGCCTAAATCAATTCAAATTTCGATCTCCCTCAAACAAATAACAAGGAAACAGAAGAGAAACTTCAAACCTACAAAGCAATGGGACACGGTATCCACAAAATTAACGAATATATCGTTGACTTCTAACTTTCCAGGTGAGAAAGGCCGGCGCAATAAAAAACTCAAAGTCTCTGCCAAGGAAAGCACACACGTGGAAAACGATGACGGCTATTACAGCGGTCGTGAAGAAGATGACAATGTCCGCCATGGTGAAGGGAAAACGAGAGACTTTACCAAACTAGAATTGAAGCCTGACCACCCTAATCGGCCTTTATGGGCTTGTCCAGATGGCCGGATATTCCTGGAAACTTTATCGGCTTTGTACAAACAAGCTTATGATTTCCTCATTGCCATTGCGGAACCCGTTTGCAGGCAAGAGTGGATGCACGAGTATAACTTGACCCCGCATTCTTTATATGCGGCTGTCTCAGTTGGCCTTGAAACCGAAACAATTATTTCTGTTCTAAATAAGCTGTCAAAGACCAAGCTCCCCAAAGAGATTATTGATTTCATACATGGTTCTACTGCTAATTATGGCAAAGTGAAGCTCGTGCTTAAGAAGAATCGGTATTTTGTCGAGTCGCCATATCCAGAGGTACTGAAGACATTGCTTAAGGACAACTTTATTGCAGAATCAAGGATTACTTCTGAGGGTCCTCATGGAAATGAAGATTTTACAATTAGCACAACGATGGGTGAAATTGGAGCTGGTCCTAGTGATTTGCTAAATGAAGCAGAACTGGCAGCTGTGGCTGAAGAAAAAGAAACTCATGCATTTGAAATTGATCCTTCAAAGGTTGAGAATGTTAAGCAACGTTGCTTGCCAGATGCTTTGAACTATCCTATGTTGGAGGAGTATGACTTCAAAAATGATACAGTTAACCCTGATCTTGATATGGAACTAAAGCCTCAAGCGCAACCCCGACCGTATCAAGAGAAGAGCTTGAGTAAAATGTTTGGGAATGGGAGGGCAAGATCTGGCATTATTGTACTGCCTTGCGGTGCTGGAAAATCTCTAGTTGGTGTTTCTGCAGCCTCTCGAATAAGAAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTTTCCGTTGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCAACTATCCGAGATGACCAAATTTGTCGTTTCACATCTGATAGTAAAGAAAGAGTCCGTGGAAATGCTGGGGTGGTTGTGACAACATATAACATGATTGGTTTTGGTGGAAAGAGGTCCGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTTCTTATGGATGAGGTGCATGTTGTTCCTGCTGAAATGTTTCGAAATGTCATCAAATTTACTAAATCACATTGCAAGCTTGGGCTCACTGCCACACTGGTGAGAGAGGATGAGAAAATCACAGATCTGAACTTCCTTATTGGCCCCAAATTGTATGAAGCAAACTGGTTGGATTTGGTTAAAGGCGGATTTATTGCTAATGTACAGTGTGCTGAAGTATGGTGTCCTATGACAAAAGAGTTTTTCCTGGAATATTTGAAGAGGGAAAACTCAAAGAAAAAGCAGGCACTTTATGTAATGAATCCAAATAAGTTTAGGGCATGCGAGTTTCTTATACGGTTTCATGAAGAGCACCGTGGTGATAAAATTATTGTATTTGCCGATAATCTATTTGCACTTACAGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGTGCTACCAGCCATGCTGAGAGGACAAAAATTCTACAAGCTTTCAAAACAAGTCGGGACGTAAACACCGTATTCCTGTCTAAGGTGGGTGATAATTCCATAGACATTCCTGAGGCAAATGTGATTATTCAGATCTCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGACGTATTTTGAGGGCTAAGGGTAGACCTCAGGATCGGATTGCAGGAGGTAAAGAGGAGTACAATGCGTTCTTTTATTCTCTTGTGTCGACTGATACTCAGGAGATGTACTTTTCAACTAAACGCCAGCAGTTTTTGATTGATCAAGGTTATAGTTTTAAGGTTATTACAAGCTTGCCCCCTCCTGAATCAGGATCTGATTTGAGCTATCACCGTCTTGATGACCAACTGGCACTACTTTCAAAGGTGTTGAGTGTTGGTGATGATAAAGTTGGCTTAGAGACACTAGAAGAAGACCCTGATGAGATTGCCCTTCAGAAAGCACGTCGCTCAACAGGATCCATGACTTTGATGTCAGGCGCCAAGGGGATGGTTTACATGGAATATAGTACTGAAACGCAGAAACACAAGCATGGCAAAGCACAGATTAAGAGTACTAAGCCCAGGGATCCGGCAAAGAGACATTATTTGTTTAAACAACGCCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

811

Amino Acids

92.16

Weight (kDa)

8.94

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	105 - 228	8.8e-33	Helicase conserved C-terminal domain
ResIII	PF04851	320 - 477	3.6e-18	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	502 - 748	2.4e-115	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	552 - 654	3.6e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2296
AatII	GACGTC	1 cut(s)	1927
AccB1I	GGYRCC	1 cut(s)	2303
AccI	GTMKAC	2 cut(s)	1969, 2033
AciI	CCGC	7 cut(s)	219, 244, 398, 446, 461, 1041, 1515
AclI	AACGTT	1 cut(s)	856
AclWI	GGATC	7 cut(s)	821, 1986, 2146, 2277, 2290, 2387, 2400
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	4 cut(s)	18, 1179, 1385, 1797
AcuI	CTGAAG	4 cut(s)	662, 816, 1563, 2243
AcvI	CACGTG	1 cut(s)	193
AcyI	GRCGYC	2 cut(s)	1924, 2304
AfaI	GTAC	8 cut(s)	365, 639, 1032, 1533, 2006, 2054, 2335, 2380
AfiI	CCNNNNNNNGG	3 cut(s)	411, 1849, 2135
AflII	CTTAAG	2 cut(s)	596, 653
AflIII	ACRYGT	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	2270
AjnI	CCWGG	4 cut(s)	133, 342, 1575, 2387
AleI	CACNNNNGTG	3 cut(s)	191, 1427, 1686
Alw21I	GWGCWC	1 cut(s)	1683
Alw26I	GTCTC	5 cut(s)	175, 261, 472, 2219, 2398
AlwI	GGATC	7 cut(s)	821, 1986, 2146, 2277, 2290, 2387, 2400
AlwNI	CAGNNNCTG	1 cut(s)	2141
AoxI	GGCC	5 cut(s)	145, 308, 331, 475, 1471
ApeKI	GCWGC	3 cut(s)	785, 1073, 1095
ApoI	RAATTY	4 cut(s)	18, 1179, 1385, 1797
Asp700I	GAANNNNTTC	1 cut(s)	1368
AspLEI	GCGC	3 cut(s)	153, 958, 2306
AspS9I	GGNCC	4 cut(s)	695, 752, 1275, 1472
AsuHPI	GGTGA	8 cut(s)	149, 263, 749, 1441, 1700, 1868, 2147, 2216
AsuII	TTCGAA	1 cut(s)	1372
AvaII	GGWCC	3 cut(s)	695, 752, 1275
AxyI	CCTNAGG	2 cut(s)	1878, 1974
BamHI	GGATCC	2 cut(s)	2282, 2392
BanI	GGYRCC	1 cut(s)	2303
BanII	GRGCYC	1 cut(s)	1416
BauI	CACGAG	2 cut(s)	428, 590
BbrPI	CACGTG	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	650, 2244
Bbv12I	GWGCWC	1 cut(s)	1683
BbvI	GCAGC	3 cut(s)	797, 1082, 1085
BccI	CCATC	3 cut(s)	323, 727, 2308
BceAI	ACGGC	2 cut(s)	223, 2412
BciT130I	CCWGG	4 cut(s)	135, 344, 1577, 2389
BciVI	GTATCC	1 cut(s)	103
BclI	TGATCA	2 cut(s)	1129, 2086
BcoDI	GTCTC	5 cut(s)	175, 261, 472, 2219, 2398
BfaI	CTAG	4 cut(s)	281, 756, 1058, 2231
BfmI	CTRYAG	1 cut(s)	1071
BfoI	RGCGCY	1 cut(s)	2307
BfrI	CTTAAG	2 cut(s)	596, 653
BfuI	GTATCC	1 cut(s)	103
BglII	AGATCT	3 cut(s)	1016, 1453, 1899
BisI	GCNGC	4 cut(s)	462, 786, 1074, 1096
BlsI	GCNGC	4 cut(s)	463, 787, 1075, 1097
BmcAI	AGTACT	2 cut(s)	2335, 2380
Bme1390I	CCNGG	4 cut(s)	135, 344, 1577, 2389
Bme18I	GGWCC	3 cut(s)	695, 752, 1275
BmgBI	CACGTC	1 cut(s)	2270
BmgT120I	GGNCC	4 cut(s)	695, 752, 1275, 1472
BmiI	GGNNCC	6 cut(s)	402, 696, 1474, 2284, 2305, 2394
BmrFI	CCNGG	4 cut(s)	135, 344, 1577, 2389
BmsI	GCATC	2 cut(s)	414, 859
BpiI	GAAGAC	2 cut(s)	650, 2244
Bpu10I	CCTNAGC	1 cut(s)	1962
Bpu14I	TTCGAA	1 cut(s)	1372
BpuEI	CTTGAG	2 cut(s)	936, 1006
BsaAI	YACGTR	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	1924, 2304
BsaJI	CCNNGG	8 cut(s)	177, 247, 1216, 1684, 2307, 2387, 2388, 2428
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 1849, 2135
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	4 cut(s)	786, 1431, 1499, 2178
Bse21I	CCTNAGG	2 cut(s)	1878, 1974
Bse3DI	GCAATG	6 cut(s)	86, 387, 393, 647, 1399, 1746
BseBI	CCWGG	4 cut(s)	135, 344, 1577, 2389
BseDI	CCNNGG	8 cut(s)	177, 247, 1216, 1684, 2307, 2387, 2388, 2428
BseGI	GGATG	4 cut(s)	429, 1345, 1444, 2319
BseLI	CCNNNNNNNGG	3 cut(s)	411, 1849, 2135
BseMI	GCAATG	6 cut(s)	86, 387, 393, 647, 1399, 1746
BseMII	CTCAG	6 cut(s)	483, 681, 1776, 1869, 1988, 2057
BseNI	ACTGG	4 cut(s)	786, 1431, 1499, 2178
BseRI	GAGGAG	2 cut(s)	908, 2015
BseXI	GCAGC	3 cut(s)	797, 1082, 1085
BseYI	CCCAGC	1 cut(s)	1226
Bsh1285I	CGRYCG	2 cut(s)	223, 968
BshFI	GGCC	5 cut(s)	147, 310, 333, 477, 1473
BshNI	GGYRCC	1 cut(s)	2303
BsiEI	CGRYCG	2 cut(s)	223, 968
BsiHKAI	GWGCWC	1 cut(s)	1683
BsiSI	CCGG	3 cut(s)	148, 334, 2396
BslFI	GGGAC	2 cut(s)	98, 1838
BslI	CCNNNNNNNGG	3 cut(s)	411, 1849, 2135
BsmAI	GTCTC	5 cut(s)	175, 261, 472, 2219, 2398
BsmFI	GGGAC	2 cut(s)	98, 1838
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	5 cut(s)	147, 310, 333, 477, 1473
Bsp119I	TTCGAA	1 cut(s)	1372
Bsp1286I	GDGCHC	2 cut(s)	1416, 1683
Bsp1407I	TGTACA	2 cut(s)	363, 1531
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	7 cut(s)	219, 244, 398, 446, 461, 1041, 1515
BspANI	GGCC	5 cut(s)	147, 310, 333, 477, 1473
BspCNI	CTCAG	6 cut(s)	482, 682, 1777, 1870, 1987, 2056
BspHI	TCATGA	1 cut(s)	1672
BspLI	GGNNCC	6 cut(s)	402, 696, 1474, 2284, 2305, 2394
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	7 cut(s)	821, 1986, 2146, 2277, 2290, 2387, 2400
BspQI	GCTCTTC	2 cut(s)	974, 1671
BspT104I	TTCGAA	1 cut(s)	1372
BspT107I	GGYRCC	1 cut(s)	2303
BspTI	CTTAAG	2 cut(s)	596, 653
BsrDI	GCAATG	6 cut(s)	86, 387, 393, 647, 1399, 1746
BsrFI	RCCGGY	1 cut(s)	147
BsrGI	TGTACA	2 cut(s)	363, 1531
BsrI	ACTGG	4 cut(s)	786, 1431, 1499, 2178
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	8 cut(s)	177, 247, 1216, 1684, 2307, 2387, 2388, 2428
BssNI	GRCGYC	2 cut(s)	1924, 2304
BssSI	CACGAG	2 cut(s)	428, 590
BssT1I	CCWWGG	3 cut(s)	177, 247, 2307
Bst2BI	CACGAG	2 cut(s)	428, 590
Bst2UI	CCWGG	4 cut(s)	135, 344, 1577, 2389
Bst4CI	ACNGT	8 cut(s)	91, 919, 969, 1536, 1668, 1685, 1837, 2159
Bst6I	CTCTTC	4 cut(s)	50, 974, 1583, 1671
BstACI	GRCGYC	2 cut(s)	1924, 2304
BstAFI	CTTAAG	2 cut(s)	596, 653
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstAUI	TGTACA	2 cut(s)	363, 1531
BstBAI	YACGTR	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	1372
BstC8I	GCNNGC	8 cut(s)	149, 413, 863, 1406, 1614, 1651, 2072, 2120
BstDSI	CCRYGG	4 cut(s)	247, 1216, 1684, 2428
BstENI	CCTNNNNNAGG	2 cut(s)	1847, 2133
BstF5I	GGATG	4 cut(s)	429, 1345, 1444, 2319
BstH2I	RGCGCY	1 cut(s)	2307
BstHHI	GCGC	3 cut(s)	153, 958, 2306
BstMAI	GTCTC	5 cut(s)	175, 261, 472, 2219, 2398
BstMCI	CGRYCG	2 cut(s)	223, 968
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 782, 791, 955, 1115
BstNI	CCWGG	4 cut(s)	135, 344, 1577, 2389
BstNSI	RCATGY	3 cut(s)	1352, 1653, 1913
BstSCI	CCNGG	4 cut(s)	133, 342, 1575, 2387
BstSFI	CTRYAG	1 cut(s)	1071
BstV1I	GCAGC	3 cut(s)	797, 1082, 1085
BstV2I	GAAGAC	2 cut(s)	650, 2244
BstX2I	RGATCY	6 cut(s)	1016, 1453, 1899, 2138, 2282, 2392
BstXI	CCANNNNNNTGG	1 cut(s)	2314
BstYI	RGATCY	6 cut(s)	1016, 1453, 1899, 2138, 2282, 2392
Bsu36I	CCTNAGG	2 cut(s)	1878, 1974
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	5 cut(s)	147, 310, 333, 477, 1473
BtgI	CCRYGG	4 cut(s)	247, 1216, 1684, 2428
BtrI	CACGTC	1 cut(s)	2270
BtsCI	GGATG	4 cut(s)	429, 1345, 1444, 2319
BtsI	GCAGTG	1 cut(s)	1416
BtsIMutI	CAGTG	4 cut(s)	1139, 1416, 1424, 1541
Cac8I	GCNNGC	8 cut(s)	149, 413, 863, 1406, 1614, 1651, 2072, 2120
CaiI	CAGNNNCTG	1 cut(s)	2141
CciI	TCATGA	1 cut(s)	1672
CfoI	GCGC	3 cut(s)	153, 958, 2306
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	4 cut(s)	695, 752, 1275, 1472
CseI	GACGC	1 cut(s)	1928
Csp6I	GTAC	8 cut(s)	364, 638, 1031, 1532, 2005, 2053, 2334, 2379
CviQI	GTAC	8 cut(s)	364, 638, 1031, 1532, 2005, 2053, 2334, 2379
DinI	GGCGCC	1 cut(s)	2305
DraI	TTTAAA	1 cut(s)	2419
DrdI	GACNNNNNNGTC	1 cut(s)	2296
DseDI	GACNNNNNNGTC	1 cut(s)	2296
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	4 cut(s)	50, 974, 1583, 1671
EarI	CTCTTC	4 cut(s)	50, 974, 1583, 1671
EciI	GGCGGA	2 cut(s)	233, 1530
Eco130I	CCWWGG	3 cut(s)	177, 247, 2307
Eco24I	GRGCYC	1 cut(s)	1416
Eco47I	GGWCC	3 cut(s)	695, 752, 1275
Eco57I	CTGAAG	4 cut(s)	662, 816, 1563, 2243
Eco72I	CACGTG	1 cut(s)	193
Eco81I	CCTNAGG	2 cut(s)	1878, 1974
EcoNI	CCTNNNNNAGG	2 cut(s)	1847, 2133
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	4 cut(s)	133, 342, 1575, 2387
EcoT14I	CCWWGG	3 cut(s)	177, 247, 2307
EcoT22I	ATGCAT	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	1416
EgeI	GGCGCC	1 cut(s)	2305
EheI	GGCGCC	1 cut(s)	2305
ErhI	CCWWGG	3 cut(s)	177, 247, 2307
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 647, 679, 670, 702
FaqI	GGGAC	2 cut(s)	98, 1838
FauI	CCCGC	1 cut(s)	453
FbaI	TGATCA	2 cut(s)	1129, 2086
FblI	GTMKAC	2 cut(s)	1969, 2033
Fnu4HI	GCNGC	4 cut(s)	462, 786, 1074, 1096
FokI	GGATG	4 cut(s)	436, 1352, 1451, 2326
FriOI	GRGCYC	1 cut(s)	1416
Fsp4HI	GCNGC	4 cut(s)	462, 786, 1074, 1096
FspBI	CTAG	4 cut(s)	281, 756, 1058, 2231
GlaI	GCGC	3 cut(s)	152, 957, 2305
GluI	GCNGC	4 cut(s)	462, 786, 1074, 1096
GsaI	CCCAGC	1 cut(s)	1230
HaeII	RGCGCY	1 cut(s)	2307
HaeIII	GGCC	5 cut(s)	147, 310, 333, 477, 1473
HapII	CCGG	3 cut(s)	148, 334, 2396
HgaI	GACGC	1 cut(s)	1928
HhaI	GCGC	3 cut(s)	153, 958, 2306
Hin1I	GRCGYC	2 cut(s)	1924, 2304
Hin6I	GCGC	3 cut(s)	151, 956, 2304
HinP1I	GCGC	3 cut(s)	151, 956, 2304
HincII	GTYRAC	4 cut(s)	120, 922, 1161, 2034
HindII	GTYRAC	4 cut(s)	120, 922, 1161, 2034
HindIII	AAGCTT	4 cut(s)	372, 1406, 1806, 2116
HinfI	GANTC	7 cut(s)	604, 620, 674, 1212, 1283, 1630, 2132
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	3 cut(s)	148, 334, 2396
HphI	GGTGA	8 cut(s)	149, 263, 749, 1441, 1700, 1868, 2147, 2216
Hpy166II	GTNNAC	7 cut(s)	120, 922, 1161, 1831, 1970, 2034, 2320
Hpy8I	GTNNAC	7 cut(s)	120, 922, 1161, 1831, 1970, 2034, 2320
Hpy99I	CGWCG	1 cut(s)	2274
HpyAV	CCTTC	3 cut(s)	248, 840, 2267
HpyCH4III	ACNGT	8 cut(s)	91, 919, 969, 1536, 1668, 1685, 1837, 2159
HpyCH4IV	ACGT	6 cut(s)	192, 856, 1827, 1924, 1948, 2269
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 782, 791, 955, 1115
HpySE526I	ACGT	6 cut(s)	192, 856, 1827, 1924, 1948, 2269
Hsp92I	GRCGYC	2 cut(s)	1924, 2304
HspAI	GCGC	3 cut(s)	151, 956, 2304
KasI	GGCGCC	1 cut(s)	2303
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
Ksp22I	TGATCA	2 cut(s)	1129, 2086
KspAI	GTTAAC	1 cut(s)	922
LguI	GCTCTTC	2 cut(s)	974, 1671
LmnI	GCTCC	2 cut(s)	534, 746
Lsp1109I	GCAGC	3 cut(s)	797, 1082, 1085
LweI	GCATC	2 cut(s)	414, 859
MaeI	CTAG	4 cut(s)	281, 756, 1058, 2231
MaeII	ACGT	6 cut(s)	192, 856, 1827, 1924, 1948, 2269
MaeIII	GTNAC	1 cut(s)	1237
MflI	RGATCY	6 cut(s)	1016, 1453, 1899, 2138, 2282, 2392
MhlI	GDGCHC	2 cut(s)	1416, 1683
Mly113I	GGCGCC	1 cut(s)	2304
MlyI	GAGTC	2 cut(s)	629, 1221
MmeI	TCCRAC	2 cut(s)	870, 1479
Mph1103I	ATGCAT	1 cut(s)	817
MroNI	GCCGGC	1 cut(s)	147
MroXI	GAANNNNTTC	1 cut(s)	1368
MslI	CAYNNNNRTG	6 cut(s)	191, 705, 731, 1427, 1686, 2355
MspA1I	CMGCKG	2 cut(s)	219, 788
MspCI	CTTAAG	2 cut(s)	596, 653
MspI	CCGG	3 cut(s)	148, 334, 2396
MspR9I	CCNGG	4 cut(s)	135, 344, 1577, 2389
MssI	GTTTAAAC	1 cut(s)	2419
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	4 cut(s)	135, 344, 1577, 2389
MwoI	GCNNNNNNNGC	5 cut(s)	216, 782, 791, 955, 1115
NaeI	GCCGGC	1 cut(s)	149
NarI	GGCGCC	1 cut(s)	2304
NcoI	CCATGG	1 cut(s)	247
NgoMIV	GCCGGC	1 cut(s)	147
NlaIV	GGNNCC	6 cut(s)	402, 696, 1474, 2284, 2305, 2394
NmuCI	GTSAC	1 cut(s)	1237
NsiI	ATGCAT	1 cut(s)	817
NspI	RCATGY	3 cut(s)	1352, 1653, 1913
NspV	TTCGAA	1 cut(s)	1372
OliI	CACNNNNGTG	3 cut(s)	191, 1427, 1686
PaeI	GCATGC	1 cut(s)	1653
PagI	TCATGA	1 cut(s)	1672
PasI	CCCWGGG	1 cut(s)	2388
PciSI	GCTCTTC	2 cut(s)	974, 1671
PcsI	WCGNNNNNNNCGW	3 cut(s)	113, 198, 1833
PctI	GAATGC	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	1368
PfeI	GAWTC	5 cut(s)	604, 674, 1283, 1630, 2132
PflFI	GACNNNGTC	1 cut(s)	239
PfoI	TCCNGGA	2 cut(s)	342, 1575
PkrI	GCNGC	4 cut(s)	463, 787, 1075, 1097
PleI	GAGTC	2 cut(s)	628, 1220
PluTI	GGCGCC	1 cut(s)	2307
PmaCI	CACGTG	1 cut(s)	193
PmeI	GTTTAAAC	1 cut(s)	2419
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	2 cut(s)	628, 1220
Ppu21I	YACGTR	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	695
Psp1406I	AACGTT	1 cut(s)	856
Psp5II	RGGWCCY	1 cut(s)	695
Psp6I	CCWGG	4 cut(s)	133, 342, 1575, 2387
PspCI	CACGTG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	1226
PspGI	CCWGG	4 cut(s)	133, 342, 1575, 2387
PspN4I	GGNNCC	6 cut(s)	402, 696, 1474, 2284, 2305, 2394
PspPI	GGNCC	4 cut(s)	695, 752, 1275, 1472
PspPPI	RGGWCCY	1 cut(s)	695
PsrI	GAACNNNNNNTAC	2 cut(s)	1997, 2029
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	2141
PsuI	RGATCY	6 cut(s)	1016, 1453, 1899, 2138, 2282, 2392
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	8 cut(s)	365, 639, 1032, 1533, 2006, 2054, 2335, 2380
RsaNI	GTAC	8 cut(s)	364, 638, 1031, 1532, 2005, 2053, 2334, 2379
RseI	CAYNNNNRTG	6 cut(s)	191, 705, 731, 1427, 1686, 2355
SalI	GTCGAC	1 cut(s)	2032
SapI	GCTCTTC	2 cut(s)	974, 1671
SatI	GCNGC	4 cut(s)	462, 786, 1074, 1096
Sau96I	GGNCC	4 cut(s)	695, 752, 1275, 1472
ScaI	AGTACT	2 cut(s)	2335, 2380
SchI	GAGTC	2 cut(s)	629, 1221
ScrFI	CCNGG	4 cut(s)	135, 344, 1577, 2389
SduI	GDGCHC	2 cut(s)	1416, 1683
SfaNI	GCATC	2 cut(s)	414, 859
SfcI	CTRYAG	1 cut(s)	1071
SfoI	GGCGCC	1 cut(s)	2305
SfuI	TTCGAA	1 cut(s)	1372
SinI	GGWCC	3 cut(s)	695, 752, 1275
SmiMI	CAYNNNNRTG	6 cut(s)	191, 705, 731, 1427, 1686, 2355
SmlI	CTYRAG	4 cut(s)	596, 653, 951, 985
SmoI	CTYRAG	4 cut(s)	596, 653, 951, 985
SphI	GCATGC	1 cut(s)	1653
SsiI	CCGC	7 cut(s)	219, 244, 398, 446, 461, 1041, 1515
SspDI	GGCGCC	1 cut(s)	2303
SspI	AATATT	1 cut(s)	1583
SspMI	CTAG	4 cut(s)	281, 756, 1058, 2231
StyD4I	CCNGG	4 cut(s)	133, 342, 1575, 2387
StyI	CCWWGG	3 cut(s)	177, 247, 2307
TaaI	ACNGT	8 cut(s)	91, 919, 969, 1536, 1668, 1685, 1837, 2159
TaiI	ACGT	6 cut(s)	195, 859, 1830, 1927, 1951, 2272
TaqI	TCGA	5 cut(s)	23, 618, 1081, 1372, 2033
TatI	WGTACW	7 cut(s)	363, 1030, 1531, 2004, 2052, 2333, 2378
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	5 cut(s)	604, 674, 1283, 1630, 2132
TscAI	CASTG	4 cut(s)	1139, 1423, 1431, 1541
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	3 cut(s)	785, 1073, 1095
Tsp45I	GTSAC	1 cut(s)	1237
TspDTI	ATGAA	8 cut(s)	541, 723, 786, 1500, 1643, 1661, 1689, 1757
TspGWI	ACGGA	2 cut(s)	1114, 1205
TspRI	CASTG	4 cut(s)	1139, 1423, 1431, 1541
Tth111I	GACNNNGTC	1 cut(s)	239
Vha464I	CTTAAG	2 cut(s)	596, 653
VpaK11BI	GGWCC	3 cut(s)	695, 752, 1275
XagI	CCTNNNNNAGG	2 cut(s)	1847, 2133
XapI	RAATTY	4 cut(s)	18, 1179, 1385, 1797
XceI	RCATGY	3 cut(s)	1352, 1653, 1913
XmiI	GTMKAC	2 cut(s)	1969, 2033
XmnI	GAANNNNTTC	1 cut(s)	1368
XspI	CTAG	4 cut(s)	281, 756, 1058, 2231
ZraI	GACGTC	1 cut(s)	1925
ZrmI	AGTACT	2 cut(s)	2335, 2380
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.