Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

33744957 .. 33752594

Gene Structure 7638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGCAGGAAAGCACACACGTGGAAAACGATGACGGCTATTACAGCGGTCGTGAAGAAGATGACAATGTCCGCCATGGTGAAAGGAAAACGAGAGACTTTACCAAACTAGAATTGAAGCCTGACCACCCTAATCGGCCTTTATGGGCTTGTCCAGATGGCCGGATATTCCTGGAAACTTTCTCGGCTTTGTACAAACAAGCTTATGATTTCCTCATTGCCATTGCGGAACCCGTTTGCAGGCAAGAGTGGATGCACGAGTATAACTTGACCCCGCATTCTTTATATGCGGCTGTCTCAGTTGGCCTTGAAACCGAAACAATTATTTCTGTTCTAAATAAGCTGTCAAAGACCAAGCTCCCCAAAGAGATTATTGATTTCATACATGGTTCTACTGCTAATTATGGCAAAGTGAAGCTCGTGCTTAAGAAGAATCGGTATTTTGTCGAGTCGCCATATCCAGAGGCAGGATTTTATGCCTCCCTTAATTACCTTTTTCAGTTTACATTAGTACTGAAGACATTGCTTAAGGACAACTTTATTGCAGAATCAAGGATTACTCCTGAGGGTCCTCATGGAAATGAAGATTTTACAATTAGCACAACGATGGGTGAAATTGGAGCTGGTCCTAGTGATTTGCTAAATGAAGCAGAACTGGCAGCTGTGGCTGAAGAAAAAGAAACTCATGCATTTGAAATTGATCCTTCAAAGGTTGAGAATGTTAAGCAACGTTGCTTGCCAGATTCTTTGAACTATCCTATGTTGGAGGAGTATGACTTCAAAAATGATACAGTTAACCCTGATCTTGATATGGAACTAAAGCCTCAAGCGCAACCCCGACCGTATCAAGAGAAGAGCTTGAGTAAAATGTTTGGGAATGGGAGGGCAAGATCTGGCATTATTGTACTGCCTTGTGGTGCTGGAAAATCTCTAGTTGGTGTTTCTGCAGCCTCTCGAATAAGAAAGAGCTGCCTTTGTTTAGCAACAAATGCCGTTTCCGTTGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCAACTATCCGAGATGACCAAATTTGTCGTTTCACATCTGATAGTAAAGAAAGAGTCCGTGGAAATGCTGGGGTGGTTGTGACAACATATAACATGATTGGTTTTGGTGGAAAGAGGTCCGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTTCTTATGGATGAGGTGATTATATATATGATTTTGTGCATGTTGTTCCTGCTGAAATGTTTCGAAATGTCATCAAATTTACTAAATCACATTGCAAGCTTGGGCTCACGGGTGAGTCGGATACAGCTTTGGTCCATTGCTATACAACTTACCCTTGATCTTTTTGTTTTTGGATATCCAAATTCACGCATCAGCACAATTGCAGCCACACTGGTGAGAGAGGATGAGAAAATCACAGATCTGAACTTCCTTATTGGTCCCAAATTGTATGAAGCAAACTGGTTGGATTTGGTTAAAGGCGGATTTATTGCTAATGTACAGTGTGCTGAAGTATGGTGTCCTATGACAAAAGAGTTTTTCCTGGAATATTTGAAGAGGGAAAACTCAAAGAAAAAGCAGGCACTTTATGTAATGAATCCAAATAAGTTTAGGGCATGCGAGTTTCTTATACGGTTTCATGAAGAGCACCGTGGTGATAAAATTATTGTATTTGCCGATAATCTATTTGCACTTACAGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGTGCTACCAGCCATGCTGAGAGGACAAAAATTCTACAAGCTTTCAAAACAAGTCGGGACGTAAACACCGTATTCCTGTCTAAGGTGGGTGATAATTCCATAGACATTCCTGAGGCAAATGTGATTATTCAGATCTCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGACGTATTTTGAGGGCTAAGGGTAGACCTCAGGATCGGATTGCAGGAGGTAAAGAGGAGTACAATGCGTTCTTTTATTCTCTTGTGTCGACTGATACTCAGGAGATGTACTTTTCAACTAAACGCCAGCAGTTTTTGATTGATCAAGGTTATAGTTTTAAGGTTATTACAAGCTTGCCCCCTCCTGAATCAGGATCTGATTTGAGCTATCACCGTCTTGATGACCAACTGGCACTACTTTCAAAGGTGTTGAGTGTTGGTGATGATAAAGTTGGCTTAGAGACACTAGAAGAAGACCCTGATGAGATTGCCCTTCAGAAAGCACGTCGCTCAACAGGATCCATGACTTTGATGTCAGGCGCCAAGGGGATGGTTTACATGGAATATAGTACTGAAACGCAGAAACACAAGCATGGCAAAGCACAGATTAAGAGTACTAAGCCCAGGGATCCGGCAAAGAGACATTATTTGTTTAAACAACGCCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

806

Amino Acids

91.74

Weight (kDa)

7.25

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	47 - 154	8.4e-29	Helicase conserved C-terminal domain
ResIII	PF04851	277 - 406	1e-08	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	497 - 743	2.3e-115	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	547 - 649	3.6e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2281
AatII	GACGTC	1 cut(s)	1912
AccB1I	GGYRCC	1 cut(s)	2288
AccI	GTMKAC	2 cut(s)	1954, 2018
AciI	CCGC	6 cut(s)	45, 70, 224, 272, 287, 1500
AclI	AACGTT	1 cut(s)	727
AclWI	GGATC	7 cut(s)	692, 1971, 2131, 2262, 2275, 2372, 2385
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	4 cut(s)	1050, 1276, 1381, 1782
AcuI	CTGAAG	4 cut(s)	533, 687, 1548, 2228
AcvI	CACGTG	1 cut(s)	19
AcyI	GRCGYC	2 cut(s)	1909, 2289
AfaI	GTAC	8 cut(s)	191, 510, 903, 1518, 1991, 2039, 2320, 2365
AfiI	CCNNNNNNNGG	4 cut(s)	237, 464, 1834, 2120
AflII	CTTAAG	2 cut(s)	422, 524
AflIII	ACRYGT	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	2255
AjnI	CCWGG	3 cut(s)	168, 1560, 2372
AleI	CACNNNNGTG	3 cut(s)	17, 1412, 1671
Alw21I	GWGCWC	1 cut(s)	1668
Alw26I	GTCTC	4 cut(s)	87, 298, 2204, 2383
AlwI	GGATC	7 cut(s)	692, 1971, 2131, 2262, 2275, 2372, 2385
AlwNI	CAGNNNCTG	1 cut(s)	2126
AoxI	GGCC	3 cut(s)	134, 157, 301
ApeKI	GCWGC	4 cut(s)	656, 944, 966, 1403
ApoI	RAATTY	4 cut(s)	1050, 1276, 1381, 1782
Asp700I	GAANNNNTTC	1 cut(s)	1259
AspLEI	GCGC	2 cut(s)	829, 2291
AspS9I	GGNCC	5 cut(s)	566, 623, 1146, 1332, 1457
AsuHPI	GGTGA	9 cut(s)	89, 620, 1228, 1324, 1426, 1685, 1853, 2132, 2201
AsuII	TTCGAA	1 cut(s)	1263
AvaII	GGWCC	5 cut(s)	566, 623, 1146, 1332, 1457
AxyI	CCTNAGG	3 cut(s)	561, 1863, 1959
BamHI	GGATCC	2 cut(s)	2267, 2377
BanI	GGYRCC	1 cut(s)	2288
BanII	GRGCYC	1 cut(s)	1307
BauI	CACGAG	2 cut(s)	254, 416
BbrPI	CACGTG	1 cut(s)	19
BbsI	GAAGAC	2 cut(s)	521, 2229
Bbv12I	GWGCWC	1 cut(s)	1668
BbvI	GCAGC	4 cut(s)	668, 953, 956, 1415
BccI	CCATC	3 cut(s)	149, 598, 2293
BceAI	ACGGC	3 cut(s)	49, 974, 2397
BciT130I	CCWGG	3 cut(s)	170, 1562, 2374
BciVI	GTATCC	1 cut(s)	1314
BclI	TGATCA	2 cut(s)	1000, 2071
BcoDI	GTCTC	4 cut(s)	87, 298, 2204, 2383
BfaI	CTAG	4 cut(s)	107, 627, 929, 2216
BfmI	CTRYAG	1 cut(s)	942
BfoI	RGCGCY	1 cut(s)	2292
BfrI	CTTAAG	2 cut(s)	422, 524
BfuI	GTATCC	1 cut(s)	1314
BglII	AGATCT	3 cut(s)	887, 1438, 1884
BisI	GCNGC	5 cut(s)	288, 657, 945, 967, 1404
BlsI	GCNGC	5 cut(s)	289, 658, 946, 968, 1405
BmcAI	AGTACT	3 cut(s)	510, 2320, 2365
Bme1390I	CCNGG	3 cut(s)	170, 1562, 2374
Bme18I	GGWCC	5 cut(s)	566, 623, 1146, 1332, 1457
BmgBI	CACGTC	1 cut(s)	2255
BmgT120I	GGNCC	5 cut(s)	566, 623, 1146, 1332, 1457
BmiI	GGNNCC	6 cut(s)	228, 567, 1459, 2269, 2290, 2379
BmrFI	CCNGG	3 cut(s)	170, 1562, 2374
BmsI	GCATC	2 cut(s)	240, 1398
BpiI	GAAGAC	2 cut(s)	521, 2229
Bpu10I	CCTNAGC	1 cut(s)	1947
Bpu14I	TTCGAA	1 cut(s)	1263
BpuEI	CTTGAG	2 cut(s)	807, 877
BsaAI	YACGTR	1 cut(s)	19
BsaHI	GRCGYC	2 cut(s)	1909, 2289
BsaJI	CCNNGG	7 cut(s)	73, 1087, 1669, 2292, 2372, 2373, 2413
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 464, 1834, 2120
Bse1I	ACTGG	4 cut(s)	657, 1416, 1484, 2163
Bse21I	CCTNAGG	3 cut(s)	561, 1863, 1959
Bse3DI	GCAATG	6 cut(s)	213, 219, 518, 1290, 1335, 1731
BseBI	CCWGG	3 cut(s)	170, 1562, 2374
BseDI	CCNNGG	7 cut(s)	73, 1087, 1669, 2292, 2372, 2373, 2413
BseGI	GGATG	4 cut(s)	255, 1216, 1429, 2304
BseLI	CCNNNNNNNGG	4 cut(s)	237, 464, 1834, 2120
BseMI	GCAATG	6 cut(s)	213, 219, 518, 1290, 1335, 1731
BseMII	CTCAG	6 cut(s)	309, 552, 1761, 1854, 1973, 2042
BseNI	ACTGG	4 cut(s)	657, 1416, 1484, 2163
BseRI	GAGGAG	2 cut(s)	779, 2000
BseXI	GCAGC	4 cut(s)	668, 953, 956, 1415
BseYI	CCCAGC	1 cut(s)	1097
Bsh1285I	CGRYCG	2 cut(s)	49, 839
BshFI	GGCC	3 cut(s)	136, 159, 303
BshNI	GGYRCC	1 cut(s)	2288
BsiEI	CGRYCG	2 cut(s)	49, 839
BsiHKAI	GWGCWC	1 cut(s)	1668
BsiSI	CCGG	2 cut(s)	160, 2381
BslFI	GGGAC	2 cut(s)	1443, 1823
BslI	CCNNNNNNNGG	4 cut(s)	237, 464, 1834, 2120
BsmAI	GTCTC	4 cut(s)	87, 298, 2204, 2383
BsmFI	GGGAC	2 cut(s)	1443, 1823
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	136, 159, 303
Bsp119I	TTCGAA	1 cut(s)	1263
Bsp1286I	GDGCHC	2 cut(s)	1307, 1668
Bsp1407I	TGTACA	2 cut(s)	189, 1516
Bsp19I	CCATGG	1 cut(s)	73
BspACI	CCGC	6 cut(s)	45, 70, 224, 272, 287, 1500
BspANI	GGCC	3 cut(s)	136, 159, 303
BspCNI	CTCAG	6 cut(s)	308, 553, 1762, 1855, 1972, 2041
BspHI	TCATGA	1 cut(s)	1657
BspLI	GGNNCC	6 cut(s)	228, 567, 1459, 2269, 2290, 2379
BspMAI	CTGCAG	1 cut(s)	946
BspPI	GGATC	7 cut(s)	692, 1971, 2131, 2262, 2275, 2372, 2385
BspQI	GCTCTTC	2 cut(s)	845, 1656
BspT104I	TTCGAA	1 cut(s)	1263
BspT107I	GGYRCC	1 cut(s)	2288
BspTI	CTTAAG	2 cut(s)	422, 524
BsrDI	GCAATG	6 cut(s)	213, 219, 518, 1290, 1335, 1731
BsrGI	TGTACA	2 cut(s)	189, 1516
BsrI	ACTGG	4 cut(s)	657, 1416, 1484, 2163
BssECI	CCNNGG	7 cut(s)	73, 1087, 1669, 2292, 2372, 2373, 2413
BssNI	GRCGYC	2 cut(s)	1909, 2289
BssSI	CACGAG	2 cut(s)	254, 416
BssT1I	CCWWGG	2 cut(s)	73, 2292
Bst2BI	CACGAG	2 cut(s)	254, 416
Bst2UI	CCWGG	3 cut(s)	170, 1562, 2374
Bst4CI	ACNGT	7 cut(s)	790, 840, 1521, 1653, 1670, 1822, 2144
Bst6I	CTCTTC	3 cut(s)	845, 1568, 1656
BstACI	GRCGYC	2 cut(s)	1909, 2289
BstAFI	CTTAAG	2 cut(s)	422, 524
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstAUI	TGTACA	2 cut(s)	189, 1516
BstBAI	YACGTR	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	1263
BstC8I	GCNNGC	7 cut(s)	239, 734, 1297, 1599, 1636, 2057, 2105
BstDSI	CCRYGG	4 cut(s)	73, 1087, 1669, 2413
BstENI	CCTNNNNNAGG	2 cut(s)	1832, 2118
BstF5I	GGATG	4 cut(s)	255, 1216, 1429, 2304
BstH2I	RGCGCY	1 cut(s)	2292
BstHHI	GCGC	2 cut(s)	829, 2291
BstMAI	GTCTC	4 cut(s)	87, 298, 2204, 2383
BstMCI	CGRYCG	2 cut(s)	49, 839
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 653, 662, 826, 986
BstNI	CCWGG	3 cut(s)	170, 1562, 2374
BstNSI	RCATGY	3 cut(s)	1243, 1638, 1898
BstSCI	CCNGG	3 cut(s)	168, 1560, 2372
BstSFI	CTRYAG	1 cut(s)	942
BstV1I	GCAGC	4 cut(s)	668, 953, 956, 1415
BstV2I	GAAGAC	2 cut(s)	521, 2229
BstX2I	RGATCY	6 cut(s)	887, 1438, 1884, 2123, 2267, 2377
BstXI	CCANNNNNNTGG	1 cut(s)	2299
BstYI	RGATCY	6 cut(s)	887, 1438, 1884, 2123, 2267, 2377
Bsu36I	CCTNAGG	3 cut(s)	561, 1863, 1959
BsuI	GTATCC	1 cut(s)	1314
BsuRI	GGCC	3 cut(s)	136, 159, 303
BtgI	CCRYGG	4 cut(s)	73, 1087, 1669, 2413
BtrI	CACGTC	1 cut(s)	2255
BtsCI	GGATG	4 cut(s)	255, 1216, 1429, 2304
BtsIMutI	CAGTG	3 cut(s)	1010, 1409, 1526
Cac8I	GCNNGC	7 cut(s)	239, 734, 1297, 1599, 1636, 2057, 2105
CaiI	CAGNNNCTG	1 cut(s)	2126
CciI	TCATGA	1 cut(s)	1657
CfoI	GCGC	2 cut(s)	829, 2291
Cfr13I	GGNCC	5 cut(s)	566, 623, 1146, 1332, 1457
CseI	GACGC	1 cut(s)	1913
Csp6I	GTAC	8 cut(s)	190, 509, 902, 1517, 1990, 2038, 2319, 2364
CviQI	GTAC	8 cut(s)	190, 509, 902, 1517, 1990, 2038, 2319, 2364
DinI	GGCGCC	1 cut(s)	2290
DraI	TTTAAA	1 cut(s)	2404
DrdI	GACNNNNNNGTC	1 cut(s)	2281
DseDI	GACNNNNNNGTC	1 cut(s)	2281
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	3 cut(s)	845, 1568, 1656
EarI	CTCTTC	3 cut(s)	845, 1568, 1656
EciI	GGCGGA	2 cut(s)	59, 1515
Eco130I	CCWWGG	2 cut(s)	73, 2292
Eco24I	GRGCYC	1 cut(s)	1307
Eco32I	GATATC	1 cut(s)	1376
Eco47I	GGWCC	5 cut(s)	566, 623, 1146, 1332, 1457
Eco57I	CTGAAG	4 cut(s)	533, 687, 1548, 2228
Eco72I	CACGTG	1 cut(s)	19
Eco81I	CCTNAGG	3 cut(s)	561, 1863, 1959
EcoNI	CCTNNNNNAGG	2 cut(s)	1832, 2118
EcoO109I	RGGNCCY	1 cut(s)	566
EcoRII	CCWGG	3 cut(s)	168, 1560, 2372
EcoRV	GATATC	1 cut(s)	1376
EcoT14I	CCWWGG	2 cut(s)	73, 2292
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	1307
EgeI	GGCGCC	1 cut(s)	2290
EheI	GGCGCC	1 cut(s)	2290
ErhI	CCWWGG	2 cut(s)	73, 2292
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	2 cut(s)	1443, 1823
FauI	CCCGC	1 cut(s)	279
FbaI	TGATCA	2 cut(s)	1000, 2071
FblI	GTMKAC	2 cut(s)	1954, 2018
Fnu4HI	GCNGC	5 cut(s)	288, 657, 945, 967, 1404
FokI	GGATG	4 cut(s)	262, 1223, 1436, 2311
FriOI	GRGCYC	1 cut(s)	1307
Fsp4HI	GCNGC	5 cut(s)	288, 657, 945, 967, 1404
FspBI	CTAG	4 cut(s)	107, 627, 929, 2216
GlaI	GCGC	2 cut(s)	828, 2290
GluI	GCNGC	5 cut(s)	288, 657, 945, 967, 1404
GsaI	CCCAGC	1 cut(s)	1101
HaeII	RGCGCY	1 cut(s)	2292
HaeIII	GGCC	3 cut(s)	136, 159, 303
HapII	CCGG	2 cut(s)	160, 2381
HgaI	GACGC	1 cut(s)	1913
HhaI	GCGC	2 cut(s)	829, 2291
Hin1I	GRCGYC	2 cut(s)	1909, 2289
Hin6I	GCGC	2 cut(s)	827, 2289
HinP1I	GCGC	2 cut(s)	827, 2289
HincII	GTYRAC	3 cut(s)	793, 1032, 2019
HindII	GTYRAC	3 cut(s)	793, 1032, 2019
HindIII	AAGCTT	4 cut(s)	198, 1297, 1791, 2101
HinfI	GANTC	9 cut(s)	430, 446, 545, 740, 1083, 1154, 1315, 1615, 2117
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	2 cut(s)	160, 2381
HphI	GGTGA	9 cut(s)	89, 620, 1228, 1324, 1426, 1685, 1853, 2132, 2201
Hpy166II	GTNNAC	7 cut(s)	501, 793, 1032, 1816, 1955, 2019, 2305
Hpy8I	GTNNAC	7 cut(s)	501, 793, 1032, 1816, 1955, 2019, 2305
Hpy99I	CGWCG	1 cut(s)	2259
HpyAV	CCTTC	2 cut(s)	711, 2252
HpyCH4III	ACNGT	7 cut(s)	790, 840, 1521, 1653, 1670, 1822, 2144
HpyCH4IV	ACGT	6 cut(s)	18, 727, 1812, 1909, 1933, 2254
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 653, 662, 826, 986
HpySE526I	ACGT	6 cut(s)	18, 727, 1812, 1909, 1933, 2254
Hsp92I	GRCGYC	2 cut(s)	1909, 2289
HspAI	GCGC	2 cut(s)	827, 2289
KasI	GGCGCC	1 cut(s)	2288
Ksp22I	TGATCA	2 cut(s)	1000, 2071
KspAI	GTTAAC	1 cut(s)	793
LguI	GCTCTTC	2 cut(s)	845, 1656
LmnI	GCTCC	2 cut(s)	360, 617
Lsp1109I	GCAGC	4 cut(s)	668, 953, 956, 1415
LweI	GCATC	2 cut(s)	240, 1398
MaeI	CTAG	4 cut(s)	107, 627, 929, 2216
MaeII	ACGT	6 cut(s)	18, 727, 1812, 1909, 1933, 2254
MaeIII	GTNAC	1 cut(s)	1108
MfeI	CAATTG	1 cut(s)	1398
MflI	RGATCY	6 cut(s)	887, 1438, 1884, 2123, 2267, 2377
MhlI	GDGCHC	2 cut(s)	1307, 1668
Mly113I	GGCGCC	1 cut(s)	2289
MlyI	GAGTC	3 cut(s)	455, 1092, 1324
MmeI	TCCRAC	3 cut(s)	741, 1298, 1464
Mph1103I	ATGCAT	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	1259
MslI	CAYNNNNRTG	6 cut(s)	17, 576, 602, 1412, 1671, 2340
MspA1I	CMGCKG	2 cut(s)	45, 659
MspCI	CTTAAG	2 cut(s)	422, 524
MspI	CCGG	2 cut(s)	160, 2381
MspR9I	CCNGG	3 cut(s)	170, 1562, 2374
MssI	GTTTAAAC	1 cut(s)	2404
MunI	CAATTG	1 cut(s)	1398
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	3 cut(s)	170, 1562, 2374
MwoI	GCNNNNNNNGC	5 cut(s)	42, 653, 662, 826, 986
NarI	GGCGCC	1 cut(s)	2289
NcoI	CCATGG	1 cut(s)	73
NlaIV	GGNNCC	6 cut(s)	228, 567, 1459, 2269, 2290, 2379
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	1108
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	3 cut(s)	1243, 1638, 1898
NspV	TTCGAA	1 cut(s)	1263
OliI	CACNNNNGTG	3 cut(s)	17, 1412, 1671
PaeI	GCATGC	1 cut(s)	1638
PagI	TCATGA	1 cut(s)	1657
PasI	CCCWGGG	1 cut(s)	2373
PciSI	GCTCTTC	2 cut(s)	845, 1656
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 1818
PctI	GAATGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	1259
PfeI	GAWTC	6 cut(s)	430, 545, 740, 1154, 1615, 2117
PflFI	GACNNNGTC	1 cut(s)	65
PfoI	TCCNGGA	2 cut(s)	168, 1560
PkrI	GCNGC	5 cut(s)	289, 658, 946, 968, 1405
PleI	GAGTC	3 cut(s)	454, 1091, 1323
PluTI	GGCGCC	1 cut(s)	2292
PmaCI	CACGTG	1 cut(s)	19
PmeI	GTTTAAAC	1 cut(s)	2404
PmlI	CACGTG	1 cut(s)	19
PpsI	GAGTC	3 cut(s)	454, 1091, 1323
Ppu21I	YACGTR	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	566
Psp1406I	AACGTT	1 cut(s)	727
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	168, 1560, 2372
PspCI	CACGTG	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	1097
PspGI	CCWGG	3 cut(s)	168, 1560, 2372
PspN4I	GGNNCC	6 cut(s)	228, 567, 1459, 2269, 2290, 2379
PspPI	GGNCC	5 cut(s)	566, 623, 1146, 1332, 1457
PspPPI	RGGWCCY	1 cut(s)	566
PsrI	GAACNNNNNNTAC	2 cut(s)	1982, 2014
PstI	CTGCAG	1 cut(s)	946
PstNI	CAGNNNCTG	1 cut(s)	2126
PsuI	RGATCY	6 cut(s)	887, 1438, 1884, 2123, 2267, 2377
PsyI	GACNNNGTC	1 cut(s)	65
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	8 cut(s)	191, 510, 903, 1518, 1991, 2039, 2320, 2365
RsaNI	GTAC	8 cut(s)	190, 509, 902, 1517, 1990, 2038, 2319, 2364
RseI	CAYNNNNRTG	6 cut(s)	17, 576, 602, 1412, 1671, 2340
SalI	GTCGAC	1 cut(s)	2017
SapI	GCTCTTC	2 cut(s)	845, 1656
SatI	GCNGC	5 cut(s)	288, 657, 945, 967, 1404
Sau96I	GGNCC	5 cut(s)	566, 623, 1146, 1332, 1457
ScaI	AGTACT	3 cut(s)	510, 2320, 2365
SchI	GAGTC	3 cut(s)	455, 1092, 1324
ScrFI	CCNGG	3 cut(s)	170, 1562, 2374
SduI	GDGCHC	2 cut(s)	1307, 1668
SfaNI	GCATC	2 cut(s)	240, 1398
SfcI	CTRYAG	1 cut(s)	942
SfoI	GGCGCC	1 cut(s)	2290
SfuI	TTCGAA	1 cut(s)	1263
SinI	GGWCC	5 cut(s)	566, 623, 1146, 1332, 1457
SmiMI	CAYNNNNRTG	6 cut(s)	17, 576, 602, 1412, 1671, 2340
SmlI	CTYRAG	4 cut(s)	422, 524, 822, 856
SmoI	CTYRAG	4 cut(s)	422, 524, 822, 856
SphI	GCATGC	1 cut(s)	1638
SsiI	CCGC	6 cut(s)	45, 70, 224, 272, 287, 1500
SspDI	GGCGCC	1 cut(s)	2288
SspI	AATATT	1 cut(s)	1568
SspMI	CTAG	4 cut(s)	107, 627, 929, 2216
StyD4I	CCNGG	3 cut(s)	168, 1560, 2372
StyI	CCWWGG	2 cut(s)	73, 2292
TaaI	ACNGT	7 cut(s)	790, 840, 1521, 1653, 1670, 1822, 2144
TaiI	ACGT	6 cut(s)	21, 730, 1815, 1912, 1936, 2257
TaqI	TCGA	4 cut(s)	444, 952, 1263, 2018
TatI	WGTACW	8 cut(s)	189, 508, 901, 1516, 1989, 2037, 2318, 2363
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	6 cut(s)	430, 545, 740, 1154, 1615, 2117
TscAI	CASTG	3 cut(s)	1010, 1416, 1526
TseFI	GTSAC	1 cut(s)	1108
TseI	GCWGC	4 cut(s)	656, 944, 966, 1403
Tsp45I	GTSAC	1 cut(s)	1108
TspDTI	ATGAA	8 cut(s)	367, 594, 657, 1485, 1628, 1646, 1674, 1742
TspGWI	ACGGA	2 cut(s)	985, 1076
TspRI	CASTG	3 cut(s)	1010, 1416, 1526
Tth111I	GACNNNGTC	1 cut(s)	65
Vha464I	CTTAAG	2 cut(s)	422, 524
VpaK11BI	GGWCC	5 cut(s)	566, 623, 1146, 1332, 1457
XagI	CCTNNNNNAGG	2 cut(s)	1832, 2118
XapI	RAATTY	4 cut(s)	1050, 1276, 1381, 1782
XceI	RCATGY	3 cut(s)	1243, 1638, 1898
XmiI	GTMKAC	2 cut(s)	1954, 2018
XmnI	GAANNNNTTC	1 cut(s)	1259
XspI	CTAG	4 cut(s)	107, 627, 929, 2216
ZraI	GACGTC	1 cut(s)	1910
ZrmI	AGTACT	3 cut(s)	510, 2320, 2365
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.