Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

35015947 .. 35023781

Gene Structure 7835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG170300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGGACACGGTGAGAAAGGCCAGCGCAATAAAAAACTCAAAGTCTCTGCCAAGGAAAGCACACATGTGGAAAACGATGACGGCTATTACAGCGGTCGTGAAGAAGACGACAATGTTCGCCATGGTGAAGGGAAAAAGAGAGACTTTACCAAACTAGAATTGAAGACTGACCACCCTAATCGGCCTTTATGGGCTTGTCCAGATGGCCGGATATTCCTGGAAACTTTCTCGGCTTTGTACAAACAAGCTTATGATTTCCTCATTGCCATTGCAGAACCCGTTTGCAGGCAAGAGTTGATGCACGAGTATAACTTGACCCCGCATTCTTTATATGCGGCTGTCTCAGTTGGCCTTGAAACCGAAACAATTATTTCTGTTCTAAATAAGCTGTCAAAGACCAAGCTCCCCAACGAGATTATTGATTTCATACATGGTTCGACTGCTAATTATGGCAAAGTGAAGCTCGTGCTTAAGAAGAATCGATACTTTGTCGAGTCGCCATATCCAGAGGTACTGAAGACATTGCTTAAGGACAACTTTATTGCAGAATCAAGGATTACTTCTGAGGGTCCTCATGGAAATGAAGATTTTACAGTTAGCACAACGATGGGCGAAATTGGAGCTGGTCCTAGTGATTTGCTAAATGAAGCAGAACTGGCAGCTGTGGCTGAAGAAAAAGAAACTCATTCATTTGAAATTGATCCATCAAAGGTTGAGAATGTTAAGCAACGTTGCTTGCCAGATTCTTTGAACTATCCTATGTTGGAGGAGTATGACTTCAAAAATGATACAGTTAACCCTGATCTTGATATGGAACTGAAGCCTCAAGCGCAACCCCGACCGTATCAAGAGAAGAGCTTGAGTAAAATGTTCGGGAATGGGAGGGCAAGATCTGGCATTATTGTACTGCCTTGCGGTGCTGGAAAATCTCTAGTTGGTGTTTCTGCAGCCTCTCGAATAAGAAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTTTCCGTTGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCAACTATCCGAGATGACCAAATTTGTCGTTTCACATCTGATAGCAAAGAAAGAGTCCGTGGAAATGCTGGGGTGGTTGTGACAACATATAACATGATTGGTTTTGGTGGAAAGAGGTCCGTAGAATCTGAAAAGATTATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTTCTTATGGATGAGGTGCATGTTGTTCCTGCTGAAATGTTTCGAAATGTGATCAAATTTACTAAATCACACTGCAAGCTTGGGCTCACTGCCACACTGGTGAGAGAGGATGAGAAGATCACAGACCTGAACTTCCTTATTGGTCCAAAATTGTATGAAGCAAACTGGTTGGATTTGGTTAAAGGTGGATTTATTGCTAATGTACAGTGTGCTGAAGTATGGTGTCCAATGACAAAAGAGTTTTTCCTGGAATATTTGAAGAGGGAAAACTCAAAGAAAAAGCAGGCACTTTATGTAATGAATCCAAATAAGTTTAGGGCATGTGAGTTTCTGATACGGTTTCATGAAGAGCACCGTGGTGATAAAATTATTGTATTTGCCGATAATCTATTTGCACTTACAGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGTGCTACCAGCCATGCTGAGAGGACAAAAATTCTACAAGCTTTCAAAACAAGTCGGGACGTAAACACCGTATTCCTGTCTAAGGTGGGAGATAATTCCATAGACATTCCTGAGGCAAATGTGATTATTCAGATCTCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGACGTATTTTGAGGGCTAAGGGTAGACCTCAGGATCGGATTGCAGGAGGTAAAGAGGAGTACAATGCGTTCTTTTATTCTCTTGTGTCGACTGATACTCAGGAGATGTACTTTTCAACTAAACGCCAGCAGTTTTTGATTGATCAAGGTTATAGTTTTAAGGTTATTACAAGCTTGCCCCCTCCTGAATCAGGAGCTGATTTGAGCTATCACCGTCTTGATGACCAACTGGCACTACTTTCAAAGGTGTTGAGTGTTGGTGATGATAAAGTTGGCTTAGAGACACTAGAGGAAGACCCTGATGAGATTGCCCTTCAGAAAGCACGTCGCTCAACAGGATCAATGAGTTTGATGTCAGGCGCCAAGGGGATGGTTTACATGGAATATAGTACTGAAACGCAGAAACACAAGCATGGCAAAGCACAGATTAAGAGTACTAAGCCCAGGGATCCGGCGAAGAGACATTATTTGTTTAAACAACGCCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

769

Amino Acids

87.18

Weight (kDa)

8.47

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	63 - 186	3.9e-33	Helicase conserved C-terminal domain
ResIII	PF04851	278 - 435	4.5e-18	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	460 - 706	2.8e-115	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	510 - 612	3.4e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1801
AccB1I	GGYRCC	1 cut(s)	2177
AccI	GTMKAC	2 cut(s)	1843, 1907
AciI	CCGC	4 cut(s)	93, 320, 335, 915
AclI	AACGTT	1 cut(s)	730
AclWI	GGATC	5 cut(s)	695, 1860, 2164, 2261, 2274
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	1053, 1259, 1671
AcuI	CTGAAG	5 cut(s)	536, 690, 839, 1437, 2117
AcyI	GRCGYC	2 cut(s)	1798, 2178
AfaI	GTAC	8 cut(s)	239, 513, 906, 1407, 1880, 1928, 2209, 2254
AfiI	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
AflII	CTTAAG	2 cut(s)	470, 527
AflIII	ACRYGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	2144
AjnI	CCWGG	3 cut(s)	216, 1449, 2261
AleI	CACNNNNGTG	3 cut(s)	65, 1301, 1560
Alw21I	GWGCWC	1 cut(s)	1557
Alw26I	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
AlwI	GGATC	5 cut(s)	695, 1860, 2164, 2261, 2274
AlwNI	CAGNNNCTG	1 cut(s)	2015
AoxI	GGCC	4 cut(s)	19, 182, 205, 349
ApeKI	GCWGC	3 cut(s)	659, 947, 969
ApoI	RAATTY	3 cut(s)	1053, 1259, 1671
ArsI	GACNNNNNNTTYG	2 cut(s)	1071, 1103
Asp700I	GAANNNNTTC	1 cut(s)	1242
AspLEI	GCGC	3 cut(s)	27, 832, 2180
AspS9I	GGNCC	4 cut(s)	569, 626, 1149, 1346
AsuHPI	GGTGA	6 cut(s)	23, 137, 1315, 1574, 2021, 2090
AsuII	TTCGAA	1 cut(s)	1246
AvaII	GGWCC	4 cut(s)	569, 626, 1149, 1346
AxyI	CCTNAGG	2 cut(s)	1752, 1848
BamHI	GGATCC	1 cut(s)	2266
BanI	GGYRCC	1 cut(s)	2177
BanII	GRGCYC	1 cut(s)	1290
BarI	GAAGNNNNNNTAC	2 cut(s)	467, 499
BauI	CACGAG	2 cut(s)	302, 464
BbsI	GAAGAC	4 cut(s)	111, 170, 524, 2118
Bbv12I	GWGCWC	1 cut(s)	1557
BbvI	GCAGC	3 cut(s)	671, 956, 959
BccI	CCATC	4 cut(s)	197, 601, 712, 2182
BceAI	ACGGC	2 cut(s)	97, 2286
BciT130I	CCWGG	3 cut(s)	218, 1451, 2263
BclI	TGATCA	3 cut(s)	1003, 1254, 1960
BcoDI	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
BfaI	CTAG	4 cut(s)	155, 630, 932, 2105
BfmI	CTRYAG	1 cut(s)	945
BfoI	RGCGCY	1 cut(s)	2181
BfrI	CTTAAG	2 cut(s)	470, 527
BglII	AGATCT	2 cut(s)	890, 1773
BisI	GCNGC	4 cut(s)	336, 660, 948, 970
BlsI	GCNGC	4 cut(s)	337, 661, 949, 971
BmcAI	AGTACT	2 cut(s)	2209, 2254
Bme1390I	CCNGG	3 cut(s)	218, 1451, 2263
Bme18I	GGWCC	4 cut(s)	569, 626, 1149, 1346
BmgBI	CACGTC	1 cut(s)	2144
BmgT120I	GGNCC	4 cut(s)	569, 626, 1149, 1346
BmiI	GGNNCC	3 cut(s)	570, 2179, 2268
BmrFI	CCNGG	3 cut(s)	218, 1451, 2263
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	4 cut(s)	111, 170, 524, 2118
Bpu10I	CCTNAGC	1 cut(s)	1836
Bpu14I	TTCGAA	1 cut(s)	1246
BpuEI	CTTGAG	2 cut(s)	810, 880
Bsa29I	ATCGAT	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	1798, 2178
BsaJI	CCNNGG	8 cut(s)	51, 121, 1090, 1558, 2181, 2261, 2262, 2302
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
Bse1I	ACTGG	4 cut(s)	660, 1305, 1373, 2052
Bse21I	CCTNAGG	2 cut(s)	1752, 1848
Bse3DI	GCAATG	4 cut(s)	261, 267, 521, 1620
BseBI	CCWGG	3 cut(s)	218, 1451, 2263
BseCI	ATCGAT	1 cut(s)	481
BseDI	CCNNGG	8 cut(s)	51, 121, 1090, 1558, 2181, 2261, 2262, 2302
BseGI	GGATG	3 cut(s)	1219, 1318, 2193
BseLI	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
BseMI	GCAATG	4 cut(s)	261, 267, 521, 1620
BseMII	CTCAG	6 cut(s)	357, 555, 1650, 1743, 1862, 1931
BseNI	ACTGG	4 cut(s)	660, 1305, 1373, 2052
BseRI	GAGGAG	2 cut(s)	782, 1889
BseXI	GCAGC	3 cut(s)	671, 956, 959
BseYI	CCCAGC	1 cut(s)	1100
Bsh1285I	CGRYCG	2 cut(s)	97, 842
BshFI	GGCC	4 cut(s)	21, 184, 207, 351
BshNI	GGYRCC	1 cut(s)	2177
BshVI	ATCGAT	1 cut(s)	481
BsiEI	CGRYCG	2 cut(s)	97, 842
BsiHKAI	GWGCWC	1 cut(s)	1557
BsiSI	CCGG	2 cut(s)	208, 2270
BslFI	GGGAC	2 cut(s)	18, 1712
BslI	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
BsmAI	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
BsmFI	GGGAC	2 cut(s)	18, 1712
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	21, 184, 207, 351
Bsp119I	TTCGAA	1 cut(s)	1246
Bsp1286I	GDGCHC	2 cut(s)	1290, 1557
Bsp1407I	TGTACA	2 cut(s)	237, 1405
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	93, 320, 335, 915
BspANI	GGCC	4 cut(s)	21, 184, 207, 351
BspCNI	CTCAG	6 cut(s)	356, 556, 1651, 1744, 1861, 1930
BspDI	ATCGAT	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	1546
BspLI	GGNNCC	3 cut(s)	570, 2179, 2268
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	5 cut(s)	695, 1860, 2164, 2261, 2274
BspQI	GCTCTTC	2 cut(s)	848, 1545
BspT104I	TTCGAA	1 cut(s)	1246
BspT107I	GGYRCC	1 cut(s)	2177
BspTI	CTTAAG	2 cut(s)	470, 527
BsrDI	GCAATG	4 cut(s)	261, 267, 521, 1620
BsrGI	TGTACA	2 cut(s)	237, 1405
BsrI	ACTGG	4 cut(s)	660, 1305, 1373, 2052
BssECI	CCNNGG	8 cut(s)	51, 121, 1090, 1558, 2181, 2261, 2262, 2302
BssNI	GRCGYC	2 cut(s)	1798, 2178
BssSI	CACGAG	2 cut(s)	302, 464
BssT1I	CCWWGG	3 cut(s)	51, 121, 2181
Bst2BI	CACGAG	2 cut(s)	302, 464
Bst2UI	CCWGG	3 cut(s)	218, 1451, 2263
Bst4CI	ACNGT	9 cut(s)	11, 595, 793, 843, 1410, 1542, 1559, 1711, 2033
Bst6I	CTCTTC	4 cut(s)	848, 1457, 1545, 2270
BstACI	GRCGYC	2 cut(s)	1798, 2178
BstAFI	CTTAAG	2 cut(s)	470, 527
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstAUI	TGTACA	2 cut(s)	237, 1405
BstBI	TTCGAA	1 cut(s)	1246
BstC8I	GCNNGC	7 cut(s)	23, 287, 737, 1280, 1488, 1946, 1994
BstDSI	CCRYGG	4 cut(s)	121, 1090, 1558, 2302
BstENI	CCTNNNNNAGG	2 cut(s)	1721, 2007
BstF5I	GGATG	3 cut(s)	1219, 1318, 2193
BstH2I	RGCGCY	1 cut(s)	2181
BstHHI	GCGC	3 cut(s)	27, 832, 2180
BstMAI	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
BstMCI	CGRYCG	2 cut(s)	97, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 656, 665, 829, 989
BstNI	CCWGG	3 cut(s)	218, 1451, 2263
BstNSI	RCATGY	4 cut(s)	68, 1226, 1527, 1787
BstSCI	CCNGG	3 cut(s)	216, 1449, 2261
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	3 cut(s)	671, 956, 959
BstV2I	GAAGAC	4 cut(s)	111, 170, 524, 2118
BstX2I	RGATCY	3 cut(s)	890, 1773, 2266
BstXI	CCANNNNNNTGG	1 cut(s)	2188
BstYI	RGATCY	3 cut(s)	890, 1773, 2266
Bsu15I	ATCGAT	1 cut(s)	481
Bsu36I	CCTNAGG	2 cut(s)	1752, 1848
BsuRI	GGCC	4 cut(s)	21, 184, 207, 351
BsuTUI	ATCGAT	1 cut(s)	481
BtgI	CCRYGG	4 cut(s)	121, 1090, 1558, 2302
BtrI	CACGTC	1 cut(s)	2144
BtsCI	GGATG	3 cut(s)	1219, 1318, 2193
BtsI	GCAGTG	2 cut(s)	1273, 1290
BtsIMutI	CAGTG	5 cut(s)	1013, 1273, 1290, 1298, 1415
Cac8I	GCNNGC	7 cut(s)	23, 287, 737, 1280, 1488, 1946, 1994
CaiI	CAGNNNCTG	1 cut(s)	2015
CciI	TCATGA	1 cut(s)	1546
CfoI	GCGC	3 cut(s)	27, 832, 2180
Cfr13I	GGNCC	4 cut(s)	569, 626, 1149, 1346
ClaI	ATCGAT	1 cut(s)	481
CseI	GACGC	1 cut(s)	1802
Csp6I	GTAC	8 cut(s)	238, 512, 905, 1406, 1879, 1927, 2208, 2253
CviQI	GTAC	8 cut(s)	238, 512, 905, 1406, 1879, 1927, 2208, 2253
DinI	GGCGCC	1 cut(s)	2179
DraI	TTTAAA	1 cut(s)	2293
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	4 cut(s)	848, 1457, 1545, 2270
EarI	CTCTTC	4 cut(s)	848, 1457, 1545, 2270
Eco130I	CCWWGG	3 cut(s)	51, 121, 2181
Eco24I	GRGCYC	1 cut(s)	1290
Eco47I	GGWCC	4 cut(s)	569, 626, 1149, 1346
Eco57I	CTGAAG	5 cut(s)	536, 690, 839, 1437, 2117
Eco81I	CCTNAGG	2 cut(s)	1752, 1848
EcoNI	CCTNNNNNAGG	2 cut(s)	1721, 2007
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	216, 1449, 2261
EcoT14I	CCWWGG	3 cut(s)	51, 121, 2181
EcoT38I	GRGCYC	1 cut(s)	1290
EgeI	GGCGCC	1 cut(s)	2179
EheI	GGCGCC	1 cut(s)	2179
ErhI	CCWWGG	3 cut(s)	51, 121, 2181
FalI	AAGNNNNNCTT	6 cut(s)	128, 160, 521, 553, 544, 576
FaqI	GGGAC	2 cut(s)	18, 1712
FauI	CCCGC	1 cut(s)	327
FbaI	TGATCA	3 cut(s)	1003, 1254, 1960
FblI	GTMKAC	2 cut(s)	1843, 1907
Fnu4HI	GCNGC	4 cut(s)	336, 660, 948, 970
FokI	GGATG	3 cut(s)	1226, 1325, 2200
FriOI	GRGCYC	1 cut(s)	1290
Fsp4HI	GCNGC	4 cut(s)	336, 660, 948, 970
FspBI	CTAG	4 cut(s)	155, 630, 932, 2105
GlaI	GCGC	3 cut(s)	26, 831, 2179
GluI	GCNGC	4 cut(s)	336, 660, 948, 970
GsaI	CCCAGC	1 cut(s)	1104
HaeII	RGCGCY	1 cut(s)	2181
HaeIII	GGCC	4 cut(s)	21, 184, 207, 351
HapII	CCGG	2 cut(s)	208, 2270
HgaI	GACGC	1 cut(s)	1802
HhaI	GCGC	3 cut(s)	27, 832, 2180
Hin1I	GRCGYC	2 cut(s)	1798, 2178
Hin6I	GCGC	3 cut(s)	25, 830, 2178
HinP1I	GCGC	3 cut(s)	25, 830, 2178
HincII	GTYRAC	3 cut(s)	796, 1035, 1908
HindII	GTYRAC	3 cut(s)	796, 1035, 1908
HindIII	AAGCTT	4 cut(s)	246, 1280, 1680, 1990
HinfI	GANTC	8 cut(s)	478, 494, 548, 743, 1086, 1157, 1504, 2006
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	2 cut(s)	208, 2270
HphI	GGTGA	6 cut(s)	23, 137, 1315, 1574, 2021, 2090
Hpy166II	GTNNAC	6 cut(s)	796, 1035, 1705, 1844, 1908, 2194
Hpy188I	TCNGA	9 cut(s)	565, 1043, 1072, 1162, 1536, 1626, 1773, 1857, 2136
Hpy8I	GTNNAC	6 cut(s)	796, 1035, 1705, 1844, 1908, 2194
Hpy99I	CGWCG	1 cut(s)	2148
HpyAV	CCTTC	2 cut(s)	122, 2141
HpyCH4III	ACNGT	9 cut(s)	11, 595, 793, 843, 1410, 1542, 1559, 1711, 2033
HpyCH4IV	ACGT	5 cut(s)	730, 1701, 1798, 1822, 2143
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 656, 665, 829, 989
HpySE526I	ACGT	5 cut(s)	730, 1701, 1798, 1822, 2143
Hsp92I	GRCGYC	2 cut(s)	1798, 2178
HspAI	GCGC	3 cut(s)	25, 830, 2178
KasI	GGCGCC	1 cut(s)	2177
Ksp22I	TGATCA	3 cut(s)	1003, 1254, 1960
KspAI	GTTAAC	1 cut(s)	796
LguI	GCTCTTC	2 cut(s)	848, 1545
LmnI	GCTCC	3 cut(s)	408, 620, 2012
Lsp1109I	GCAGC	3 cut(s)	671, 956, 959
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	4 cut(s)	155, 630, 932, 2105
MaeII	ACGT	5 cut(s)	730, 1701, 1798, 1822, 2143
MaeIII	GTNAC	1 cut(s)	1111
MflI	RGATCY	3 cut(s)	890, 1773, 2266
MhlI	GDGCHC	2 cut(s)	1290, 1557
Mly113I	GGCGCC	1 cut(s)	2178
MlyI	GAGTC	2 cut(s)	503, 1095
MmeI	TCCRAC	2 cut(s)	744, 1353
MroXI	GAANNNNTTC	1 cut(s)	1242
MseI	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
MslI	CAYNNNNRTG	6 cut(s)	65, 579, 605, 1301, 1560, 2229
MspA1I	CMGCKG	2 cut(s)	93, 662
MspCI	CTTAAG	2 cut(s)	470, 527
MspI	CCGG	2 cut(s)	208, 2270
MspR9I	CCNGG	3 cut(s)	218, 1451, 2263
MssI	GTTTAAAC	1 cut(s)	2293
Mva1269I	GAATGC	1 cut(s)	322
MvaI	CCWGG	3 cut(s)	218, 1451, 2263
MwoI	GCNNNNNNNGC	5 cut(s)	90, 656, 665, 829, 989
NarI	GGCGCC	1 cut(s)	2178
NcoI	CCATGG	1 cut(s)	121
NlaIV	GGNNCC	3 cut(s)	570, 2179, 2268
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	1111
NspI	RCATGY	4 cut(s)	68, 1226, 1527, 1787
NspV	TTCGAA	1 cut(s)	1246
OliI	CACNNNNGTG	3 cut(s)	65, 1301, 1560
PagI	TCATGA	1 cut(s)	1546
PasI	CCCWGGG	1 cut(s)	2262
PciI	ACATGT	1 cut(s)	64
PciSI	GCTCTTC	2 cut(s)	848, 1545
PcsI	WCGNNNNNNNCGW	1 cut(s)	1707
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	1242
PfeI	GAWTC	6 cut(s)	478, 548, 743, 1157, 1504, 2006
PfoI	TCCNGGA	2 cut(s)	216, 1449
PkrI	GCNGC	4 cut(s)	337, 661, 949, 971
PleI	GAGTC	2 cut(s)	502, 1094
PluTI	GGCGCC	1 cut(s)	2181
PmeI	GTTTAAAC	1 cut(s)	2293
PpsI	GAGTC	2 cut(s)	502, 1094
PpuMI	RGGWCCY	1 cut(s)	569
PscI	ACATGT	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	3 cut(s)	216, 1449, 2261
PspFI	CCCAGC	1 cut(s)	1100
PspGI	CCWGG	3 cut(s)	216, 1449, 2261
PspN4I	GGNNCC	3 cut(s)	570, 2179, 2268
PspPI	GGNCC	4 cut(s)	569, 626, 1149, 1346
PspPPI	RGGWCCY	1 cut(s)	569
PsrI	GAACNNNNNNTAC	2 cut(s)	1871, 1903
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	1 cut(s)	2015
PsuI	RGATCY	3 cut(s)	890, 1773, 2266
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	8 cut(s)	239, 513, 906, 1407, 1880, 1928, 2209, 2254
RsaNI	GTAC	8 cut(s)	238, 512, 905, 1406, 1879, 1927, 2208, 2253
RseI	CAYNNNNRTG	6 cut(s)	65, 579, 605, 1301, 1560, 2229
SalI	GTCGAC	1 cut(s)	1906
SapI	GCTCTTC	2 cut(s)	848, 1545
SaqAI	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
SatI	GCNGC	4 cut(s)	336, 660, 948, 970
Sau96I	GGNCC	4 cut(s)	569, 626, 1149, 1346
ScaI	AGTACT	2 cut(s)	2209, 2254
SchI	GAGTC	2 cut(s)	503, 1095
ScrFI	CCNGG	3 cut(s)	218, 1451, 2263
SduI	GDGCHC	2 cut(s)	1290, 1557
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	945
SfoI	GGCGCC	1 cut(s)	2179
SfuI	TTCGAA	1 cut(s)	1246
SinI	GGWCC	4 cut(s)	569, 626, 1149, 1346
SmiMI	CAYNNNNRTG	6 cut(s)	65, 579, 605, 1301, 1560, 2229
SmlI	CTYRAG	4 cut(s)	470, 527, 825, 859
SmoI	CTYRAG	4 cut(s)	470, 527, 825, 859
SsiI	CCGC	4 cut(s)	93, 320, 335, 915
SspDI	GGCGCC	1 cut(s)	2177
SspI	AATATT	1 cut(s)	1457
SspMI	CTAG	4 cut(s)	155, 630, 932, 2105
StyD4I	CCNGG	3 cut(s)	216, 1449, 2261
StyI	CCWWGG	3 cut(s)	51, 121, 2181
TaaI	ACNGT	9 cut(s)	11, 595, 793, 843, 1410, 1542, 1559, 1711, 2033
TaiI	ACGT	5 cut(s)	733, 1704, 1801, 1825, 2146
TaqI	TCGA	6 cut(s)	437, 481, 492, 955, 1246, 1907
TatI	WGTACW	7 cut(s)	237, 904, 1405, 1878, 1926, 2207, 2252
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	6 cut(s)	478, 548, 743, 1157, 1504, 2006
Tru1I	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
Tru9I	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
TscAI	CASTG	5 cut(s)	1013, 1280, 1297, 1305, 1415
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	3 cut(s)	659, 947, 969
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	9 cut(s)	415, 597, 660, 678, 1374, 1517, 1535, 1563, 1631
TspGWI	ACGGA	3 cut(s)	988, 1079, 1141
TspRI	CASTG	5 cut(s)	1013, 1280, 1297, 1305, 1415
Vha464I	CTTAAG	2 cut(s)	470, 527
VpaK11BI	GGWCC	4 cut(s)	569, 626, 1149, 1346
XagI	CCTNNNNNAGG	2 cut(s)	1721, 2007
XapI	RAATTY	3 cut(s)	1053, 1259, 1671
XceI	RCATGY	4 cut(s)	68, 1226, 1527, 1787
XmiI	GTMKAC	2 cut(s)	1843, 1907
XmnI	GAANNNNTTC	1 cut(s)	1242
XspI	CTAG	4 cut(s)	155, 630, 932, 2105
ZraI	GACGTC	1 cut(s)	1799
ZrmI	AGTACT	2 cut(s)	2209, 2254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.