Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Forward (+)

34618656 .. 34627375

Gene Structure 8720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG156100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGGACACGGTGAGAAAGGCCGGCGCAATAAAAAACTCAAAGTCTCTGCCAAGGAAAGCACACACGTGGAAAACGATGACGGCTATTACAGCGGTCGTGAAGAAGATGACAATGTCCGCCATGGTGAAGGGAAAACGAGAGACTTTACCAAACTAGAATTGAAGCCTGACCACCCTAATCGGCCTTTATGGGCTTGTCCAGATGGCCGGATATTCCTGGAAACTTTCTCGGCTTTGTACAAACAAGCTTATGATTTCCTCATTGCCATTGCGGAACCCGTTTGCAGGCAAGAGTGGATGCACGAGTATAACTTGACCCCGCATTCTTTATATGCGGCTGTCTCAGTTGGCCTTGAAACCGAAGCAATTATTTCTGTTCTAAATAAGCTGTCAAAGACCAAGCTCCCCAAAGAGATTATTGATTTCACACATGGTTCTACTGCTAATTATGGCAAAGTGAAGCTCGTGCTTAAGAAGAATCGGTATTTTGTCGAGTCGCCATATCCAGAGGTACTGAAGACATTGCTTAAGGACAACTTTATTGCAGAATCAAGGATTACTTCTGAGGGTCCTCATGGAAATGAAGATTTTACAATTAGCACAACGATGGGTGAAATTGGAGCTGGTCCTAGTGATTTGCTAAATGAAGCAGAACTGGCAGCTGTGGCTGAAGAAAAAGAAACTCATGCATTTGAAATTGATCCTTCAAAGGTTGAGAATGTTAAGCAACGTTGCTTGCCAGATTCTTTGAACTATCCTATGTTGGAGGAGTATGACTTCAAAAATGATACAGTTAACCCTGATCTTGATATGGAACTAAAGCCTCAAGCGCAACCCCGACCGTATCAAGAGAAGAGCTTGAGTAAAATGTTTGGGAATGGGAGGGCAAGATCTGGCATTATTGTACTGCCTTGCGGTGCTGGAAAATCTCTAGTTGGTGTTTCTGCAGCCTCTCGAATAAGAAAGAGCTGCCTTTGTTTAGCAACAAATGCTGTTTCCGTTGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCAACTATCCGAGATGACCAAATTTGTCGTTTCACATCTGATAGTAAAGAAAGAGTCCGTGGAAATGCTGGTGTGGTTGTGACAACATATAACATGATTGGTTTTGGTGGAAAGAGGTCCGAAGAATCTGAAAAGATTATTGAAGAAATAAGAAACAGAGAATGGGGATTGCTTCTTATGGATGAGGTGCATGTTGTTCCTGCTGAAATGTTTCGAAATGTCATCAAATTTACTAAATCACATTGCAAGCTTGGGCTCACTGCCACACTGGTGAGAGAGGATGAGAAAATCACAGATCTGAACTTCCTTATTGGTCCCAAATTGTATGAAGCAAACTGGTTGGATTTGGTTAAAGGCGGATTTATTGCTAATGTACAGTGTGCTGAAGTATGGTGTCCTATGACAAAAGAGTTTTTCCTGGAATATTTGAAGAGGGAAAACTCAAAGAAAAAGCAGGCACTTTATGTAATGAATCCAAATAAGTTTAGGGCATGCGAGTTTCTTATACGGTTTCATGAAGAGCACCGTGGTGATAAAATTATTGTATTTGCCGATAATCTATTTGCACTTACAGAGTATGCAATGAAACTTCGGAAACCTATGATCTATGGTGCTACCAGCCATGCTGAGAGGACAAAAATTCTACAAGCTTTCAAAACAAGTCGGGACGTAAACACCGTATTCCTGTCTAAGGTGGGTGATAATTCCATAGACATTCCTGAGGCAAATGTGATTATTCAGATCTCATCACATGCTGGTTCAAGACGTCAAGAAGCACAGCGTCTTGGACGTATTTTGAGGGCTAAGGGTAGACCTCAGGATCGGATTGCAGGAGGTAAAGAGGAGTACAATGCATTCTTTTATTCTCTTGTGTCGACTGATACTCAGGAGATGTACTTTTCAAATAAACGCCAGCAGTTTTTGATTGATCAAGGTTATAGTTTTAAGGTTATTACAAGCTTGCCCCCTCCTGAATCAGGATCTGATTTGAGCTATCACCGTCTTGATGACCAACTGGCACTACTTTCAAAGGTGTTGAGTGTTGGTGATGATAAAGTTGGCTTAGAGACACTAGAAGAAGACCCTGATGAGATTGCCCTTCAGAAAGCACGTCGCTCAACAGGATCCATGAGTTTGATGTCAGGCACCAAGGGGATGGTTTACATGGAATATAGTACTGAAACGCAGAAACACAAGCATGGCAAAGCACAGATTAAGAGTACTAAGCCCAGGGATCCGGCGAAGAGACATTATTTGTTTAAACAACGCCGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

769

Amino Acids

87.31

Weight (kDa)

8.47

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	63 - 186	2.2e-31	Helicase conserved C-terminal domain
ResIII	PF04851	278 - 435	3.3e-18	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	460 - 706	3.5e-115	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	510 - 612	3.4e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1801
AccB1I	GGYRCC	1 cut(s)	2177
AccI	GTMKAC	2 cut(s)	1843, 1907
AciI	CCGC	7 cut(s)	93, 118, 272, 320, 335, 915, 1389
AclI	AACGTT	1 cut(s)	730
AclWI	GGATC	7 cut(s)	695, 1860, 2020, 2151, 2164, 2261, 2274
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	1053, 1259, 1671
AcuI	CTGAAG	4 cut(s)	536, 690, 1437, 2117
AcvI	CACGTG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	1798
AfaI	GTAC	8 cut(s)	239, 513, 906, 1407, 1880, 1928, 2209, 2254
AfiI	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
AflII	CTTAAG	2 cut(s)	470, 527
AflIII	ACRYGT	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	2144
AjnI	CCWGG	3 cut(s)	216, 1449, 2261
AleI	CACNNNNGTG	3 cut(s)	65, 1301, 1560
Alw21I	GWGCWC	1 cut(s)	1557
Alw26I	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
AlwI	GGATC	7 cut(s)	695, 1860, 2020, 2151, 2164, 2261, 2274
AlwNI	CAGNNNCTG	1 cut(s)	2015
AoxI	GGCC	4 cut(s)	19, 182, 205, 349
ApeKI	GCWGC	3 cut(s)	659, 947, 969
ApoI	RAATTY	3 cut(s)	1053, 1259, 1671
Asp700I	GAANNNNTTC	1 cut(s)	1242
AspLEI	GCGC	2 cut(s)	27, 832
AspS9I	GGNCC	4 cut(s)	569, 626, 1149, 1346
AsuHPI	GGTGA	8 cut(s)	23, 137, 623, 1315, 1574, 1742, 2021, 2090
AsuII	TTCGAA	1 cut(s)	1246
AvaII	GGWCC	4 cut(s)	569, 626, 1149, 1346
AxyI	CCTNAGG	2 cut(s)	1752, 1848
BamHI	GGATCC	2 cut(s)	2156, 2266
BanI	GGYRCC	1 cut(s)	2177
BanII	GRGCYC	1 cut(s)	1290
BauI	CACGAG	2 cut(s)	302, 464
BbrPI	CACGTG	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	524, 2118
Bbv12I	GWGCWC	1 cut(s)	1557
BbvI	GCAGC	3 cut(s)	671, 956, 959
BccI	CCATC	3 cut(s)	197, 601, 2182
BceAI	ACGGC	2 cut(s)	97, 2286
BciT130I	CCWGG	3 cut(s)	218, 1451, 2263
BclI	TGATCA	2 cut(s)	1003, 1960
BcoDI	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
BfaI	CTAG	4 cut(s)	155, 630, 932, 2105
BfmI	CTRYAG	1 cut(s)	945
BfrI	CTTAAG	2 cut(s)	470, 527
BglII	AGATCT	3 cut(s)	890, 1327, 1773
BisI	GCNGC	4 cut(s)	336, 660, 948, 970
BlsI	GCNGC	4 cut(s)	337, 661, 949, 971
BmcAI	AGTACT	2 cut(s)	2209, 2254
Bme1390I	CCNGG	3 cut(s)	218, 1451, 2263
Bme18I	GGWCC	4 cut(s)	569, 626, 1149, 1346
BmgBI	CACGTC	1 cut(s)	2144
BmgT120I	GGNCC	4 cut(s)	569, 626, 1149, 1346
BmiI	GGNNCC	6 cut(s)	276, 570, 1348, 2158, 2179, 2268
BmrFI	CCNGG	3 cut(s)	218, 1451, 2263
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	524, 2118
Bpu10I	CCTNAGC	1 cut(s)	1836
Bpu14I	TTCGAA	1 cut(s)	1246
BpuEI	CTTGAG	2 cut(s)	810, 880
BsaAI	YACGTR	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	1798
BsaJI	CCNNGG	8 cut(s)	51, 121, 1090, 1558, 2181, 2261, 2262, 2302
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	4 cut(s)	660, 1305, 1373, 2052
Bse21I	CCTNAGG	2 cut(s)	1752, 1848
Bse3DI	GCAATG	5 cut(s)	261, 267, 521, 1273, 1620
BseBI	CCWGG	3 cut(s)	218, 1451, 2263
BseDI	CCNNGG	8 cut(s)	51, 121, 1090, 1558, 2181, 2261, 2262, 2302
BseGI	GGATG	4 cut(s)	303, 1219, 1318, 2193
BseLI	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
BseMI	GCAATG	5 cut(s)	261, 267, 521, 1273, 1620
BseMII	CTCAG	6 cut(s)	357, 555, 1650, 1743, 1862, 1931
BseNI	ACTGG	4 cut(s)	660, 1305, 1373, 2052
BseRI	GAGGAG	2 cut(s)	782, 1889
BseXI	GCAGC	3 cut(s)	671, 956, 959
Bsh1285I	CGRYCG	2 cut(s)	97, 842
BshFI	GGCC	4 cut(s)	21, 184, 207, 351
BshNI	GGYRCC	1 cut(s)	2177
BsiEI	CGRYCG	2 cut(s)	97, 842
BsiHKAI	GWGCWC	1 cut(s)	1557
BsiSI	CCGG	3 cut(s)	22, 208, 2270
BslFI	GGGAC	3 cut(s)	18, 1332, 1712
BslI	CCNNNNNNNGG	3 cut(s)	285, 1723, 2009
BsmAI	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
BsmFI	GGGAC	3 cut(s)	18, 1332, 1712
BsmI	GAATGC	2 cut(s)	322, 1886
BsnI	GGCC	4 cut(s)	21, 184, 207, 351
Bsp119I	TTCGAA	1 cut(s)	1246
Bsp1286I	GDGCHC	2 cut(s)	1290, 1557
Bsp1407I	TGTACA	2 cut(s)	237, 1405
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	7 cut(s)	93, 118, 272, 320, 335, 915, 1389
BspANI	GGCC	4 cut(s)	21, 184, 207, 351
BspCNI	CTCAG	6 cut(s)	356, 556, 1651, 1744, 1861, 1930
BspHI	TCATGA	1 cut(s)	1546
BspLI	GGNNCC	6 cut(s)	276, 570, 1348, 2158, 2179, 2268
BspMAI	CTGCAG	1 cut(s)	949
BspPI	GGATC	7 cut(s)	695, 1860, 2020, 2151, 2164, 2261, 2274
BspQI	GCTCTTC	2 cut(s)	848, 1545
BspT104I	TTCGAA	1 cut(s)	1246
BspT107I	GGYRCC	1 cut(s)	2177
BspTI	CTTAAG	2 cut(s)	470, 527
BsrDI	GCAATG	5 cut(s)	261, 267, 521, 1273, 1620
BsrFI	RCCGGY	1 cut(s)	21
BsrGI	TGTACA	2 cut(s)	237, 1405
BsrI	ACTGG	4 cut(s)	660, 1305, 1373, 2052
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	8 cut(s)	51, 121, 1090, 1558, 2181, 2261, 2262, 2302
BssNI	GRCGYC	1 cut(s)	1798
BssSI	CACGAG	2 cut(s)	302, 464
BssT1I	CCWWGG	3 cut(s)	51, 121, 2181
Bst2BI	CACGAG	2 cut(s)	302, 464
Bst2UI	CCWGG	3 cut(s)	218, 1451, 2263
Bst4CI	ACNGT	8 cut(s)	11, 793, 843, 1410, 1542, 1559, 1711, 2033
Bst6I	CTCTTC	4 cut(s)	848, 1457, 1545, 2270
BstACI	GRCGYC	1 cut(s)	1798
BstAFI	CTTAAG	2 cut(s)	470, 527
BstAPI	GCANNNNNTGC	1 cut(s)	989
BstAUI	TGTACA	2 cut(s)	237, 1405
BstBAI	YACGTR	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	1246
BstC8I	GCNNGC	8 cut(s)	23, 287, 737, 1280, 1488, 1525, 1946, 1994
BstDSI	CCRYGG	4 cut(s)	121, 1090, 1558, 2302
BstENI	CCTNNNNNAGG	2 cut(s)	1721, 2007
BstF5I	GGATG	4 cut(s)	303, 1219, 1318, 2193
BstHHI	GCGC	2 cut(s)	27, 832
BstMAI	GTCTC	5 cut(s)	49, 135, 346, 2093, 2272
BstMCI	CGRYCG	2 cut(s)	97, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 656, 665, 829, 989
BstNI	CCWGG	3 cut(s)	218, 1451, 2263
BstNSI	RCATGY	3 cut(s)	1226, 1527, 1787
BstSCI	CCNGG	3 cut(s)	216, 1449, 2261
BstSFI	CTRYAG	1 cut(s)	945
BstV1I	GCAGC	3 cut(s)	671, 956, 959
BstV2I	GAAGAC	2 cut(s)	524, 2118
BstX2I	RGATCY	6 cut(s)	890, 1327, 1773, 2012, 2156, 2266
BstXI	CCANNNNNNTGG	1 cut(s)	2188
BstYI	RGATCY	6 cut(s)	890, 1327, 1773, 2012, 2156, 2266
Bsu36I	CCTNAGG	2 cut(s)	1752, 1848
BsuRI	GGCC	4 cut(s)	21, 184, 207, 351
BtgI	CCRYGG	4 cut(s)	121, 1090, 1558, 2302
BtrI	CACGTC	1 cut(s)	2144
BtsCI	GGATG	4 cut(s)	303, 1219, 1318, 2193
BtsI	GCAGTG	1 cut(s)	1290
BtsIMutI	CAGTG	4 cut(s)	1013, 1290, 1298, 1415
Cac8I	GCNNGC	8 cut(s)	23, 287, 737, 1280, 1488, 1525, 1946, 1994
CaiI	CAGNNNCTG	1 cut(s)	2015
CciI	TCATGA	1 cut(s)	1546
CfoI	GCGC	2 cut(s)	27, 832
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	4 cut(s)	569, 626, 1149, 1346
CseI	GACGC	1 cut(s)	1802
Csp6I	GTAC	8 cut(s)	238, 512, 905, 1406, 1879, 1927, 2208, 2253
CviQI	GTAC	8 cut(s)	238, 512, 905, 1406, 1879, 1927, 2208, 2253
DraI	TTTAAA	1 cut(s)	2293
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	4 cut(s)	848, 1457, 1545, 2270
EarI	CTCTTC	4 cut(s)	848, 1457, 1545, 2270
EciI	GGCGGA	2 cut(s)	107, 1404
Eco130I	CCWWGG	3 cut(s)	51, 121, 2181
Eco24I	GRGCYC	1 cut(s)	1290
Eco47I	GGWCC	4 cut(s)	569, 626, 1149, 1346
Eco57I	CTGAAG	4 cut(s)	536, 690, 1437, 2117
Eco72I	CACGTG	1 cut(s)	67
Eco81I	CCTNAGG	2 cut(s)	1752, 1848
EcoNI	CCTNNNNNAGG	2 cut(s)	1721, 2007
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	216, 1449, 2261
EcoT14I	CCWWGG	3 cut(s)	51, 121, 2181
EcoT22I	ATGCAT	2 cut(s)	691, 1888
EcoT38I	GRGCYC	1 cut(s)	1290
ErhI	CCWWGG	3 cut(s)	51, 121, 2181
FalI	AAGNNNNNCTT	4 cut(s)	521, 553, 544, 576
FaqI	GGGAC	3 cut(s)	18, 1332, 1712
FauI	CCCGC	1 cut(s)	327
FbaI	TGATCA	2 cut(s)	1003, 1960
FblI	GTMKAC	2 cut(s)	1843, 1907
Fnu4HI	GCNGC	4 cut(s)	336, 660, 948, 970
FokI	GGATG	4 cut(s)	310, 1226, 1325, 2200
FriOI	GRGCYC	1 cut(s)	1290
Fsp4HI	GCNGC	4 cut(s)	336, 660, 948, 970
FspBI	CTAG	4 cut(s)	155, 630, 932, 2105
GlaI	GCGC	2 cut(s)	26, 831
GluI	GCNGC	4 cut(s)	336, 660, 948, 970
HaeIII	GGCC	4 cut(s)	21, 184, 207, 351
HapII	CCGG	3 cut(s)	22, 208, 2270
HgaI	GACGC	1 cut(s)	1802
HhaI	GCGC	2 cut(s)	27, 832
Hin1I	GRCGYC	1 cut(s)	1798
Hin6I	GCGC	2 cut(s)	25, 830
HinP1I	GCGC	2 cut(s)	25, 830
HincII	GTYRAC	3 cut(s)	796, 1035, 1908
HindII	GTYRAC	3 cut(s)	796, 1035, 1908
HindIII	AAGCTT	4 cut(s)	246, 1280, 1680, 1990
HinfI	GANTC	8 cut(s)	478, 494, 548, 743, 1086, 1157, 1504, 2006
HpaI	GTTAAC	1 cut(s)	796
HpaII	CCGG	3 cut(s)	22, 208, 2270
HphI	GGTGA	8 cut(s)	23, 137, 623, 1315, 1574, 1742, 2021, 2090
Hpy166II	GTNNAC	6 cut(s)	796, 1035, 1705, 1844, 1908, 2194
Hpy8I	GTNNAC	6 cut(s)	796, 1035, 1705, 1844, 1908, 2194
Hpy99I	CGWCG	1 cut(s)	2148
HpyAV	CCTTC	3 cut(s)	122, 714, 2141
HpyCH4III	ACNGT	8 cut(s)	11, 793, 843, 1410, 1542, 1559, 1711, 2033
HpyCH4IV	ACGT	6 cut(s)	66, 730, 1701, 1798, 1822, 2143
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 656, 665, 829, 989
HpySE526I	ACGT	6 cut(s)	66, 730, 1701, 1798, 1822, 2143
Hsp92I	GRCGYC	1 cut(s)	1798
HspAI	GCGC	2 cut(s)	25, 830
KroI	GCCGGC	1 cut(s)	21
KroNI	GCCGGC	1 cut(s)	23
Ksp22I	TGATCA	2 cut(s)	1003, 1960
KspAI	GTTAAC	1 cut(s)	796
LguI	GCTCTTC	2 cut(s)	848, 1545
LmnI	GCTCC	2 cut(s)	408, 620
Lsp1109I	GCAGC	3 cut(s)	671, 956, 959
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	4 cut(s)	155, 630, 932, 2105
MaeII	ACGT	6 cut(s)	66, 730, 1701, 1798, 1822, 2143
MaeIII	GTNAC	1 cut(s)	1111
MflI	RGATCY	6 cut(s)	890, 1327, 1773, 2012, 2156, 2266
MhlI	GDGCHC	2 cut(s)	1290, 1557
MlyI	GAGTC	2 cut(s)	503, 1095
MmeI	TCCRAC	2 cut(s)	744, 1353
Mph1103I	ATGCAT	2 cut(s)	691, 1888
MroNI	GCCGGC	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	1242
MseI	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
MslI	CAYNNNNRTG	6 cut(s)	65, 579, 605, 1301, 1560, 2229
MspA1I	CMGCKG	2 cut(s)	93, 662
MspCI	CTTAAG	2 cut(s)	470, 527
MspI	CCGG	3 cut(s)	22, 208, 2270
MspR9I	CCNGG	3 cut(s)	218, 1451, 2263
MssI	GTTTAAAC	1 cut(s)	2293
Mva1269I	GAATGC	2 cut(s)	322, 1886
MvaI	CCWGG	3 cut(s)	218, 1451, 2263
MwoI	GCNNNNNNNGC	5 cut(s)	90, 656, 665, 829, 989
NaeI	GCCGGC	1 cut(s)	23
NcoI	CCATGG	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	21
NlaIV	GGNNCC	6 cut(s)	276, 570, 1348, 2158, 2179, 2268
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	1111
NsiI	ATGCAT	2 cut(s)	691, 1888
NspI	RCATGY	3 cut(s)	1226, 1527, 1787
NspV	TTCGAA	1 cut(s)	1246
OliI	CACNNNNGTG	3 cut(s)	65, 1301, 1560
PaeI	GCATGC	1 cut(s)	1527
PagI	TCATGA	1 cut(s)	1546
PasI	CCCWGGG	1 cut(s)	2262
PciSI	GCTCTTC	2 cut(s)	848, 1545
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 1707
PctI	GAATGC	2 cut(s)	322, 1886
PdiI	GCCGGC	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	1242
PfeI	GAWTC	6 cut(s)	478, 548, 743, 1157, 1504, 2006
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	2 cut(s)	216, 1449
PkrI	GCNGC	4 cut(s)	337, 661, 949, 971
PleI	GAGTC	2 cut(s)	502, 1094
PmaCI	CACGTG	1 cut(s)	67
PmeI	GTTTAAAC	1 cut(s)	2293
PmlI	CACGTG	1 cut(s)	67
PpsI	GAGTC	2 cut(s)	502, 1094
Ppu21I	YACGTR	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	569
Psp1406I	AACGTT	1 cut(s)	730
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	3 cut(s)	216, 1449, 2261
PspCI	CACGTG	1 cut(s)	67
PspGI	CCWGG	3 cut(s)	216, 1449, 2261
PspN4I	GGNNCC	6 cut(s)	276, 570, 1348, 2158, 2179, 2268
PspPI	GGNCC	4 cut(s)	569, 626, 1149, 1346
PspPPI	RGGWCCY	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	1 cut(s)	2015
PsuI	RGATCY	6 cut(s)	890, 1327, 1773, 2012, 2156, 2266
PsyI	GACNNNGTC	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	8 cut(s)	239, 513, 906, 1407, 1880, 1928, 2209, 2254
RsaNI	GTAC	8 cut(s)	238, 512, 905, 1406, 1879, 1927, 2208, 2253
RseI	CAYNNNNRTG	6 cut(s)	65, 579, 605, 1301, 1560, 2229
SalI	GTCGAC	1 cut(s)	1906
SapI	GCTCTTC	2 cut(s)	848, 1545
SaqAI	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
SatI	GCNGC	4 cut(s)	336, 660, 948, 970
Sau96I	GGNCC	4 cut(s)	569, 626, 1149, 1346
ScaI	AGTACT	2 cut(s)	2209, 2254
SchI	GAGTC	2 cut(s)	503, 1095
ScrFI	CCNGG	3 cut(s)	218, 1451, 2263
SduI	GDGCHC	2 cut(s)	1290, 1557
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	945
SfuI	TTCGAA	1 cut(s)	1246
SinI	GGWCC	4 cut(s)	569, 626, 1149, 1346
SmiMI	CAYNNNNRTG	6 cut(s)	65, 579, 605, 1301, 1560, 2229
SmlI	CTYRAG	4 cut(s)	470, 527, 825, 859
SmoI	CTYRAG	4 cut(s)	470, 527, 825, 859
SphI	GCATGC	1 cut(s)	1527
SsiI	CCGC	7 cut(s)	93, 118, 272, 320, 335, 915, 1389
SspI	AATATT	1 cut(s)	1457
SspMI	CTAG	4 cut(s)	155, 630, 932, 2105
StyD4I	CCNGG	3 cut(s)	216, 1449, 2261
StyI	CCWWGG	3 cut(s)	51, 121, 2181
TaaI	ACNGT	8 cut(s)	11, 793, 843, 1410, 1542, 1559, 1711, 2033
TaiI	ACGT	6 cut(s)	69, 733, 1704, 1801, 1825, 2146
TaqI	TCGA	4 cut(s)	492, 955, 1246, 1907
TatI	WGTACW	7 cut(s)	237, 904, 1405, 1878, 1926, 2207, 2252
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	6 cut(s)	478, 548, 743, 1157, 1504, 2006
Tru1I	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
Tru9I	TTAA	9 cut(s)	471, 528, 723, 795, 1023, 1383, 1977, 2247, 2292
TscAI	CASTG	4 cut(s)	1013, 1297, 1305, 1415
TseFI	GTSAC	1 cut(s)	1111
TseI	GCWGC	3 cut(s)	659, 947, 969
Tsp45I	GTSAC	1 cut(s)	1111
TspDTI	ATGAA	7 cut(s)	597, 660, 1374, 1517, 1535, 1563, 1631
TspGWI	ACGGA	2 cut(s)	988, 1079
TspRI	CASTG	4 cut(s)	1013, 1297, 1305, 1415
Tth111I	GACNNNGTC	1 cut(s)	113
Vha464I	CTTAAG	2 cut(s)	470, 527
VpaK11BI	GGWCC	4 cut(s)	569, 626, 1149, 1346
XagI	CCTNNNNNAGG	2 cut(s)	1721, 2007
XapI	RAATTY	3 cut(s)	1053, 1259, 1671
XceI	RCATGY	3 cut(s)	1226, 1527, 1787
XmiI	GTMKAC	2 cut(s)	1843, 1907
XmnI	GAANNNNTTC	1 cut(s)	1242
XspI	CTAG	4 cut(s)	155, 630, 932, 2105
ZraI	GACGTC	1 cut(s)	1799
ZrmI	AGTACT	2 cut(s)	2209, 2254
Zsp2I	ATGCAT	2 cut(s)	691, 1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.