Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

11259698 .. 11260594

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGACGAGGTTCATGTAACTCCTGCTGAATCGTTTCGGAATGTCATCCAAATCACCAAATCACACTATAAGCTTGGCCTCACCGCGACGCTGCTGAGAGAGGATGACAAGATATCAGATCTCAACTTCCTCATTGGACCCAAATTGTATGAAGCAAACTGGTTGGATTTGGCGAAATGCAGATACATTGCAAACGTGGAGTCTTTTGAAGTAAGGTGTGAGATGACAGAGTCCTTTGCCAAGTACTACTACAAGAAAGAAAACTCCTTCGAAAGAATGCAAGCACTTTATTTGATGAATCCGAACAAGTTTAGGATGTGTGAGTATCTTATACAGTATCATCAGTGCCGCGGTGATAAGATCATTGTCTTCTCCGACAACCTCTTCACACTCACCGAATATGCGACCAAGCTCCGAAAACCTATGATCTATGGTGCTACCTCTCAGGCCGAGACCTCAATAATTCTAGAAGAGTTCAAAACAAACCCGAACGTAAACACAGTGTTCATGTCTAAGGTGGGTGACAGCTCCTTGGACATTCTCGAGGCAAATGTGATCATTGAGATTTCATGGCACGGTGGTTCGAGAAGACAAGAAGCGCAGCGTCTTGGTCGGATTTTGAGGGCCAAGAAAAGCAAAGAGAAGTACAATGCGTTCTTCTATTCGCTTGTGTCAACGCATACATGGGAGATGGATTTTGCAGCTAAAAGGCAGCAGTTTTTAGTCGATCAAGGTTATAGCTATAAGATTATTACAAGGTTGGATTTGCCTGACTTTCCCCCACTTGGATCAGGAGCTTTGAGCTATGACACCCTTGAAGATCAACGAGCGCTACTCGAGAAAGTTCTGAGCGCTAGGAAGGATATACTTGGGGGCCAAGATCCACTACTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

299

Amino Acids

34.56

Weight (kDa)

7.01

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC3_RAD25_C	PF16203	57 - 286	7.1e-96	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	103 - 209	1.4e-10	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	86, 351
AciI	CCGC	3 cut(s)	84, 349, 351
AclWI	GGATC	2 cut(s)	796, 875
AfaI	GTAC	2 cut(s)	245, 647
AfeI	AGCGCT	2 cut(s)	831, 853
AfiI	CCNNNNNNNGG	1 cut(s)	785
AgsI	TTSAA	3 cut(s)	209, 478, 818
AluBI	AGCT	7 cut(s)	73, 412, 528, 704, 741, 797, 804
AluI	AGCT	7 cut(s)	73, 412, 528, 704, 741, 797, 804
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	796, 875
Ama87I	CYCGRG	2 cut(s)	542, 836
Aor51HI	AGCGCT	2 cut(s)	831, 853
AoxI	GGCC	4 cut(s)	76, 447, 624, 874
ApeKI	GCWGC	4 cut(s)	91, 601, 701, 712
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	3 cut(s)	601, 832, 854
AspS9I	GGNCC	3 cut(s)	137, 624, 874
AsuHPI	GGTGA	5 cut(s)	46, 73, 365, 385, 533
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	2 cut(s)	542, 836
AvaII	GGWCC	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	361, 595
BbvI	GCAGC	4 cut(s)	78, 613, 713, 724
BccI	CCATC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	467, 855
BfoI	RGCGCY	2 cut(s)	833, 855
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	5 cut(s)	92, 349, 602, 702, 713
BlsI	GCNGC	5 cut(s)	93, 350, 603, 703, 714
BmcAI	AGTACT	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	2 cut(s)	542, 836
BmgT120I	GGNCC	3 cut(s)	137, 624, 874
BmiI	GGNNCC	2 cut(s)	139, 875
BpiI	GAAGAC	2 cut(s)	361, 595
BplI	GAGNNNNNCTC	2 cut(s)	819, 851
Bpu14I	TTCGAA	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	349, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	785
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	349, 531
BseGI	GGATG	3 cut(s)	45, 109, 321
BseLI	CCNNNNNNNGG	1 cut(s)	785
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	3 cut(s)	86, 458, 839
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	78, 613, 713, 724
Bsh1236I	CGCG	2 cut(s)	86, 351
BshFI	GGCC	4 cut(s)	78, 449, 626, 876
BsiHKCI	CYCGRG	2 cut(s)	542, 836
BslI	CCNNNNNNNGG	1 cut(s)	785
BsmAI	GTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	78, 449, 626, 876
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	2 cut(s)	542, 836
Bsp119I	TTCGAA	1 cut(s)	270
Bsp143I	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
BspACI	CCGC	3 cut(s)	84, 349, 351
BspANI	GGCC	4 cut(s)	78, 449, 626, 876
BspCNI	CTCAG	3 cut(s)	87, 457, 840
BspFNI	CGCG	2 cut(s)	86, 351
BspLI	GGNNCC	2 cut(s)	139, 875
BspPI	GGATC	2 cut(s)	796, 875
BspT104I	TTCGAA	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	349, 531
BssMI	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
BssT1I	CCWWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	336, 502, 578
Bst6I	CTCTTC	2 cut(s)	389, 465
BstBI	TTCGAA	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	4 cut(s)	95, 444, 513, 848
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	3 cut(s)	45, 109, 321
BstFNI	CGCG	2 cut(s)	86, 351
BstH2I	RGCGCY	2 cut(s)	833, 855
BstHHI	GCGC	3 cut(s)	601, 832, 854
BstKTI	GATC	8 cut(s)	121, 363, 429, 558, 730, 791, 823, 883
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
BstUI	CGCG	2 cut(s)	86, 351
BstV1I	GCAGC	4 cut(s)	78, 613, 713, 724
BstV2I	GAAGAC	2 cut(s)	361, 595
BstX2I	RGATCY	2 cut(s)	118, 880
BstYI	RGATCY	2 cut(s)	118, 880
BsuRI	GGCC	4 cut(s)	78, 449, 626, 876
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	3 cut(s)	45, 109, 321
BtsIMutI	CAGTG	2 cut(s)	350, 507
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	3 cut(s)	601, 832, 854
Cfr13I	GGNCC	3 cut(s)	137, 624, 874
Cfr42I	CCGCGG	1 cut(s)	352
CseI	GACGC	2 cut(s)	97, 593
Csp6I	GTAC	2 cut(s)	244, 646
CviAII	CATG	4 cut(s)	14, 508, 570, 684
CviQI	GTAC	2 cut(s)	244, 646
DdeI	CTNAG	4 cut(s)	95, 444, 513, 848
DpnI	GATC	8 cut(s)	120, 362, 428, 557, 729, 790, 822, 882
DpnII	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
Eam1104I	CTCTTC	2 cut(s)	389, 465
EarI	CTCTTC	2 cut(s)	389, 465
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	137
Eco47III	AGCGCT	2 cut(s)	831, 853
Eco88I	CYCGRG	2 cut(s)	542, 836
EcoRV	GATATC	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	4 cut(s)	17, 511, 573, 687
FatI	CATG	4 cut(s)	13, 507, 569, 683
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	92, 349, 602, 702, 713
FokI	GGATG	3 cut(s)	32, 116, 328
Fsp4HI	GCNGC	5 cut(s)	92, 349, 602, 702, 713
FspBI	CTAG	2 cut(s)	467, 855
GlaI	GCGC	3 cut(s)	600, 831, 853
GluI	GCNGC	5 cut(s)	92, 349, 602, 702, 713
HaeII	RGCGCY	2 cut(s)	833, 855
HaeIII	GGCC	4 cut(s)	78, 449, 626, 876
HgaI	GACGC	2 cut(s)	97, 593
HhaI	GCGC	3 cut(s)	601, 832, 854
Hin1II	CATG	4 cut(s)	17, 511, 573, 687
Hin6I	GCGC	3 cut(s)	599, 830, 852
HinP1I	GCGC	3 cut(s)	599, 830, 852
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	29, 200, 230, 298
HphI	GGTGA	5 cut(s)	46, 73, 365, 385, 533
Hpy166II	GTNNAC	2 cut(s)	496, 675
Hpy188I	TCNGA	7 cut(s)	39, 118, 303, 376, 416, 615, 849
Hpy188III	TCNNGA	5 cut(s)	467, 542, 585, 792, 838
Hpy8I	GTNNAC	2 cut(s)	496, 675
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	277, 853
HpyCH4III	ACNGT	3 cut(s)	336, 502, 578
HpyCH4IV	ACGT	2 cut(s)	195, 492
HpyCH4V	TGCA	4 cut(s)	180, 191, 280, 701
HpyF3I	CTNAG	4 cut(s)	95, 444, 513, 848
HpySE526I	ACGT	2 cut(s)	195, 492
Hsp92II	CATG	4 cut(s)	17, 511, 573, 687
HspAI	GCGC	3 cut(s)	599, 830, 852
Ksp22I	TGATCA	1 cut(s)	555
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
LmnI	GCTCC	3 cut(s)	417, 533, 794
LpnPI	CCDG	5 cut(s)	36, 145, 431, 777, 783
Lsp1109I	GCAGC	4 cut(s)	78, 613, 713, 724
MaeI	CTAG	2 cut(s)	467, 855
MaeII	ACGT	2 cut(s)	195, 492
MaeIII	GTNAC	2 cut(s)	16, 521
MalI	GATC	8 cut(s)	120, 362, 428, 557, 729, 790, 822, 882
MboI	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
MboII	GAAGA	6 cut(s)	361, 376, 482, 600, 649, 830
MflI	RGATCY	2 cut(s)	118, 880
MluCI	AATT	2 cut(s)	143, 462
MlyI	GAGTC	2 cut(s)	209, 239
MmeI	TCCRAC	4 cut(s)	144, 399, 593, 741
MnlI	CCTC	8 cut(s)	89, 94, 140, 392, 451, 466, 538, 615
MroXI	GAANNNNTTC	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	282
MvnI	CGCG	2 cut(s)	86, 351
NdeII	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
NlaIII	CATG	4 cut(s)	17, 511, 573, 687
NlaIV	GGNNCC	2 cut(s)	139, 875
NmeAIII	GCCGAG	1 cut(s)	475
NmuCI	GTSAC	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	270
PaeR7I	CTCGAG	2 cut(s)	542, 836
PctI	GAATGC	1 cut(s)	282
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	29, 298
PflFI	GACNNNGTC	1 cut(s)	229
PkrI	GCNGC	5 cut(s)	93, 350, 603, 703, 714
PleI	GAGTC	2 cut(s)	208, 238
PpsI	GAGTC	2 cut(s)	208, 238
PspN4I	GGNNCC	2 cut(s)	139, 875
PspPI	GGNCC	3 cut(s)	137, 624, 874
PsrI	GAACNNNNNNTAC	2 cut(s)	638, 670
PsuI	RGATCY	2 cut(s)	118, 880
PsyI	GACNNNGTC	1 cut(s)	229
RsaI	GTAC	2 cut(s)	245, 647
RsaNI	GTAC	2 cut(s)	244, 646
SacII	CCGCGG	1 cut(s)	352
SatI	GCNGC	5 cut(s)	92, 349, 602, 702, 713
Sau3AI	GATC	8 cut(s)	118, 360, 426, 555, 727, 788, 820, 880
Sau96I	GGNCC	3 cut(s)	137, 624, 874
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	2 cut(s)	209, 239
Sfr274I	CTCGAG	2 cut(s)	542, 836
Sfr303I	CCGCGG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	137
SlaI	CTCGAG	2 cut(s)	542, 836
SmlI	CTYRAG	2 cut(s)	542, 836
SmoI	CTYRAG	2 cut(s)	542, 836
Sse9I	AATT	2 cut(s)	143, 462
SsiI	CCGC	3 cut(s)	84, 349, 351
SspMI	CTAG	2 cut(s)	467, 855
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	3 cut(s)	336, 502, 578
TaiI	ACGT	2 cut(s)	198, 495
TaqI	TCGA	5 cut(s)	270, 543, 584, 726, 837
TasI	AATT	2 cut(s)	143, 462
TatI	WGTACW	2 cut(s)	243, 645
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	29, 298
TscAI	CASTG	2 cut(s)	350, 507
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	4 cut(s)	91, 601, 701, 712
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	4 cut(s)	165, 311, 496, 558
TspRI	CASTG	2 cut(s)	350, 507
Tth111I	GACNNNGTC	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	466
XhoI	CTCGAG	2 cut(s)	542, 836
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	2 cut(s)	467, 855
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.