Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

6193144 .. 6195491

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0079500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1761 bp

ATGGAAGAGAAAATGAAGACTATCTTACAAGCAAATGAAAACTTCGCAAACCATATTAAGGTGCTTTGGGAAAAGATTATGGTTGCTGATGACAAGATTTTGTCTATGGAGAACAAAGTGACTGAAGTGATGCAAGAAAACAGAGCGCACAAAAACCACATCAGAGCTCTGAACAAATTGTTGGCAAAGGCAAATGGGAAGAAACCTGATGAGGAAAGTAGTGATCAGAGAGCTAATCAACTTCAGATGGTGCTGGCGTCAACGGAGCAAGAAGATGGAACGGGGTATGAATATGATAGAAGCCAAGCTAAATATCAACCTCAAACACCAGTCAACGAAGAACCAAGGGGAGGTGATCCAGTTAACGCAGTTCCTCTATCTTTCAAGAAATTAGAAGAGGAAATACTAAATGAGGAGGAGATACTAAATGTTGTAGAAGCAGAAAAAATAGATATAATTGTCTCGACAATTCTCGAAGCAGCTAATTCGGCAAAAATGGCAGAACCAGAGAAGAAAGAAACTGCCACAAAGACAGAAGACATGAAAGAGAAGGAAAAGGTTGCCATGCATTCTATTGAGAGGAACGTGAAACAAAACAAGAGAAAGGCATCAACTAAGGACAAGGATGAGGATTTTGAGTATGACACTCCAGAGATCTTGAAGACTTACGGAAAGAAAAGAAAGACTGCTCCACAAGAACAGCCAAAGCAGAGAAAGAAAGCCGAACAGAAGCTGGCTACAAACCTGCAGAAAGGGAAACAAGTGCAGCAGCCAATTCAAATTGAAGATGTGAATTGCGAGAAGTACACTTGGAAAACCTTAAAGCCTGAACTCGCAAGACACTACCAGCAATTCTTTGAGATGGTTGATGACAATTTATATACCTACTGGACAAGTAGAAATGGCATAATAGGGGTAACAAGGAGAGACATGAAGATTATCATCCAAGAGGAAGATGTGGATATTAGTAATGAACTGAAAGAAAAGAAGACTCAGATTGGATTGCTGGACATTGAAGCAGCGTACTACGCTATTCAACATGAAAAGAAACTGGCAGACTTCAAGAAAGAAGGAAAGAGCCTTTTGAAAGATGACTTCAAAGGCCATGTGATTGAAATAGAGTTATTTCTAATTGAACAACTGTGGAGTAACTTCAGCTACCCCAAGGTGCTCATCCCGATCCACCATTGCTACAGCCAGCACTACACACTGCTTATCATCGAAAATGAGAAAAAACGCTTTGTTCACATGAACTCTATGCTGCCTTCAAAGAAGGAATGGACAAAAGATAACCACCACTACACCAACGCAAACTGGGTGGTAAAGCACATAAGGAGGTTCATCCATGATGTGAACATGACAGCCAGAAAATTTGACACTGACAGCCAGGATCAAGACAACACAAGAGAAAAGTGTAAAGGTGAGGACGCTCAAGGAGAACTTATCACTGAGGTTGAAGAAATGACCGAAAGAGAGAAAGAGGTCAGAAGGTGGATCTTGGATAATCATATAGGCGAACAGGACTACGAGCTTGTAGAAGACTTCAACTGCCCTCAGCAGAAAACCTCATCGGGGACTGTGGGCGCGCCTTTTATGCTCTATTTCATGGAAAGCATAGTTCACGGAGTGGCACCGAACAAGAAGAAAGCCGATGACATGAGGAAAACAATTCTTGAGAGGTTTGCAATGGAGGAATGTGGTTGGAGTGTTGAAAGATACCATCAAGAAGCTGTACTTACTGTAGGAAACGCACAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

586

Amino Acids

68.44

Weight (kDa)

5.82

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	753
AccB1I	GGYRCC	1 cut(s)	1630
AccII	CGCG	1 cut(s)	1586
AclWI	GGATC	4 cut(s)	350, 1174, 1398, 1502
AcsI	RAATTY	1 cut(s)	1370
AcuI	CTGAAG	3 cut(s)	144, 227, 1138
AcyI	GRCGYC	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	1627
AfaI	GTAC	3 cut(s)	806, 1025, 1734
AfiI	CCNNNNNNNGG	3 cut(s)	58, 350, 1572
AjnI	CCWGG	1 cut(s)	1386
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	9 cut(s)	167, 233, 308, 482, 733, 1158, 1531, 1730, 1758
AluI	AGCT	9 cut(s)	167, 233, 308, 482, 733, 1158, 1531, 1730, 1758
Alw21I	GWGCWC	2 cut(s)	169, 1173
Alw26I	GTCTC	2 cut(s)	466, 921
AlwI	GGATC	4 cut(s)	350, 1174, 1398, 1502
AlwNI	CAGNNNCTG	1 cut(s)	733
AoxI	GGCC	1 cut(s)	1102
ApeKI	GCWGC	5 cut(s)	479, 766, 769, 1019, 1261
ApoI	RAATTY	1 cut(s)	1370
AscI	GGCGCGCC	1 cut(s)	1584
AspLEI	GCGC	3 cut(s)	148, 1586, 1588
AsuHPI	GGTGA	2 cut(s)	365, 1433
BanI	GGYRCC	1 cut(s)	1630
BanII	GRGCYC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
BbsI	GAAGAC	5 cut(s)	23, 543, 668, 995, 1545
Bbv12I	GWGCWC	2 cut(s)	169, 1173
BbvCI	CCTCAGC	1 cut(s)	1554
BbvI	GCAGC	5 cut(s)	491, 778, 781, 1031, 1248
BccI	CCATC	4 cut(s)	241, 269, 856, 1728
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	1 cut(s)	1388
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	466, 921
BfaI	CTAG	1 cut(s)	1759
BfmI	CTRYAG	3 cut(s)	746, 1192, 1740
BfuAI	ACCTGC	1 cut(s)	753
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	5 cut(s)	480, 767, 770, 1020, 1262
BlsI	GCNGC	5 cut(s)	481, 768, 771, 1021, 1263
Bme1390I	CCNGG	1 cut(s)	1388
BmiI	GGNNCC	1 cut(s)	1632
BmrFI	CCNGG	1 cut(s)	1388
BmrI	ACTGGG	1 cut(s)	1324
BmsI	GCATC	2 cut(s)	120, 617
BmuI	ACTGGG	1 cut(s)	1324
BpiI	GAAGAC	5 cut(s)	23, 543, 668, 995, 1545
BpmI	CTGGAG	1 cut(s)	633
Bpu10I	CCTNAGC	1 cut(s)	1554
BpuEI	CTTGAG	2 cut(s)	1416, 1694
BsaBI	GATNNNNATC	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	344, 1164
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 350, 1572
Bse1I	ACTGG	5 cut(s)	329, 359, 893, 1056, 1319
Bse3DI	GCAATG	2 cut(s)	1186, 1692
Bse8I	GATNNNNATC	1 cut(s)	941
BseBI	CCWGG	1 cut(s)	1388
BseDI	CCNNGG	2 cut(s)	344, 1164
BseGI	GGATG	4 cut(s)	631, 942, 1173, 1341
BseJI	GATNNNNATC	1 cut(s)	941
BseLI	CCNNNNNNNGG	3 cut(s)	58, 350, 1572
BseMI	GCAATG	2 cut(s)	1186, 1692
BseMII	CTCAG	3 cut(s)	1007, 1440, 1568
BseNI	ACTGG	5 cut(s)	329, 359, 893, 1056, 1319
BsePI	GCGCGC	1 cut(s)	1584
BseRI	GAGGAG	2 cut(s)	428, 431
BseXI	GCAGC	5 cut(s)	491, 778, 781, 1031, 1248
BsgI	GTGCAG	1 cut(s)	785
Bsh1236I	CGCG	1 cut(s)	1586
BshFI	GGCC	1 cut(s)	1104
BshNI	GGYRCC	1 cut(s)	1630
BsiHKAI	GWGCWC	2 cut(s)	169, 1173
BslFI	GGGAC	1 cut(s)	1588
BslI	CCNNNNNNNGG	3 cut(s)	58, 350, 1572
BsmAI	GTCTC	2 cut(s)	466, 921
BsmFI	GGGAC	1 cut(s)	1588
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	1104
Bsp1286I	GDGCHC	2 cut(s)	169, 1173
Bsp143I	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
BspANI	GGCC	1 cut(s)	1104
BspCNI	CTCAG	3 cut(s)	1006, 1441, 1567
BspFNI	CGCG	1 cut(s)	1586
BspLI	GGNNCC	1 cut(s)	1632
BspMAI	CTGCAG	1 cut(s)	750
BspMI	ACCTGC	1 cut(s)	753
BspPI	GGATC	4 cut(s)	350, 1174, 1398, 1502
BspT107I	GGYRCC	1 cut(s)	1630
BsrDI	GCAATG	2 cut(s)	1186, 1692
BsrI	ACTGG	5 cut(s)	329, 359, 893, 1056, 1319
BssECI	CCNNGG	2 cut(s)	344, 1164
BssHII	GCGCGC	1 cut(s)	1584
BssMI	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
BssNI	GRCGYC	1 cut(s)	257
BssT1I	CCWWGG	2 cut(s)	344, 1164
Bst2UI	CCWGG	1 cut(s)	1388
Bst4CI	ACNGT	3 cut(s)	1143, 1579, 1741
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	255, 735, 1199, 1586
BstDEI	CTNAG	4 cut(s)	615, 993, 1449, 1554
BstF5I	GGATG	4 cut(s)	631, 942, 1173, 1341
BstFNI	CGCG	1 cut(s)	1586
BstHHI	GCGC	3 cut(s)	148, 1586, 1588
BstKTI	GATC	6 cut(s)	226, 358, 657, 1182, 1393, 1497
BstMAI	GTCTC	2 cut(s)	466, 921
BstMBI	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 497, 1028, 1594
BstNI	CCWGG	1 cut(s)	1388
BstSCI	CCNGG	1 cut(s)	1386
BstSFI	CTRYAG	3 cut(s)	746, 1192, 1740
BstUI	CGCG	1 cut(s)	1586
BstV1I	GCAGC	5 cut(s)	491, 778, 781, 1031, 1248
BstV2I	GAAGAC	5 cut(s)	23, 543, 668, 995, 1545
BstX2I	RGATCY	2 cut(s)	654, 1494
BstYI	RGATCY	2 cut(s)	654, 1494
BsuRI	GGCC	1 cut(s)	1104
BtsCI	GGATG	4 cut(s)	631, 942, 1173, 1341
BtsI	GCAGTG	1 cut(s)	1208
BtsIMutI	CAGTG	3 cut(s)	1208, 1377, 1446
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	4 cut(s)	255, 735, 1199, 1586
CaiI	CAGNNNCTG	1 cut(s)	733
CfoI	GCGC	3 cut(s)	148, 1586, 1588
CseI	GACGC	2 cut(s)	246, 1436
Csp6I	GTAC	3 cut(s)	805, 1024, 1733
CspCI	CAANNNNNGTGG	2 cut(s)	1299, 1334
CviQI	GTAC	3 cut(s)	805, 1024, 1733
DdeI	CTNAG	4 cut(s)	615, 993, 1449, 1554
DpnI	GATC	6 cut(s)	225, 357, 656, 1181, 1392, 1496
DpnII	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
DraIII	CACNNNGTG	1 cut(s)	1627
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Ecl136II	GAGCTC	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	344, 1164
Eco24I	GRGCYC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	167
Eco57I	CTGAAG	3 cut(s)	144, 227, 1138
EcoICRI	GAGCTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	1386
EcoT14I	CCWWGG	2 cut(s)	344, 1164
EcoT22I	ATGCAT	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	344, 1164
FalI	AAGNNNNNCTT	6 cut(s)	8, 40, 1425, 1457, 1719, 1751
FaqI	GGGAC	1 cut(s)	1588
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	5 cut(s)	480, 767, 770, 1020, 1262
FokI	GGATG	4 cut(s)	638, 929, 1160, 1328
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	5 cut(s)	480, 767, 770, 1020, 1262
FspBI	CTAG	1 cut(s)	1759
GlaI	GCGC	3 cut(s)	147, 1585, 1587
GluI	GCNGC	5 cut(s)	480, 767, 770, 1020, 1262
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	1 cut(s)	1104
HgaI	GACGC	2 cut(s)	246, 1436
HhaI	GCGC	3 cut(s)	148, 1586, 1588
Hin1I	GRCGYC	1 cut(s)	257
Hin6I	GCGC	3 cut(s)	146, 1584, 1586
HinP1I	GCGC	3 cut(s)	146, 1584, 1586
HincII	GTYRAC	3 cut(s)	261, 334, 364
HindII	GTYRAC	3 cut(s)	261, 334, 364
HinfI	GANTC	1 cut(s)	991
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	2 cut(s)	365, 1433
Hpy166II	GTNNAC	7 cut(s)	261, 334, 364, 807, 1246, 1354, 1621
Hpy188I	TCNGA	6 cut(s)	164, 171, 228, 246, 996, 1487
Hpy8I	GTNNAC	7 cut(s)	261, 334, 364, 807, 1246, 1354, 1621
HpyAV	CCTTC	5 cut(s)	544, 1064, 1267, 1275, 1482
HpyCH4III	ACNGT	3 cut(s)	1143, 1579, 1741
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	133, 568, 748, 766, 1685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 497, 1028, 1594
HpyF3I	CTNAG	4 cut(s)	615, 993, 1449, 1554
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	257
HspAI	GCGC	3 cut(s)	146, 1584, 1586
Ksp22I	TGATCA	1 cut(s)	223
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
LmnI	GCTCC	2 cut(s)	265, 694
Lsp1109I	GCAGC	5 cut(s)	491, 778, 781, 1031, 1248
LweI	GCATC	2 cut(s)	120, 617
MaeI	CTAG	1 cut(s)	1759
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	118, 916, 1148
MalI	GATC	6 cut(s)	225, 357, 656, 1181, 1392, 1496
MboI	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
MflI	RGATCY	2 cut(s)	654, 1494
MhlI	GDGCHC	2 cut(s)	169, 1173
MlyI	GAGTC	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	1682
Mph1103I	ATGCAT	1 cut(s)	570
MseI	TTAA	3 cut(s)	57, 363, 821
MspR9I	CCNGG	1 cut(s)	1388
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	1388
MvnI	CGCG	1 cut(s)	1586
MwoI	GCNNNNNNNGC	4 cut(s)	488, 497, 1028, 1594
NdeII	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
NlaIV	GGNNCC	1 cut(s)	1632
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	570
PalAI	GGCGCGCC	1 cut(s)	1584
PauI	GCGCGC	1 cut(s)	1584
PctI	GAATGC	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	481, 768, 771, 1021, 1263
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	1386
PspGI	CCWGG	1 cut(s)	1386
PspN4I	GGNNCC	1 cut(s)	1632
PstI	CTGCAG	1 cut(s)	750
PstNI	CAGNNNCTG	1 cut(s)	733
PsuI	RGATCY	2 cut(s)	654, 1494
PteI	GCGCGC	1 cut(s)	1584
RsaI	GTAC	3 cut(s)	806, 1025, 1734
RsaNI	GTAC	3 cut(s)	805, 1024, 1733
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	57, 363, 821
SatI	GCNGC	5 cut(s)	480, 767, 770, 1020, 1262
Sau3AI	GATC	6 cut(s)	223, 355, 654, 1179, 1390, 1494
SchI	GAGTC	1 cut(s)	985
ScrFI	CCNGG	1 cut(s)	1388
SduI	GDGCHC	2 cut(s)	169, 1173
SfaNI	GCATC	2 cut(s)	120, 617
SfcI	CTRYAG	3 cut(s)	746, 1192, 1740
SgsI	GGCGCGCC	1 cut(s)	1584
SmlI	CTYRAG	2 cut(s)	1431, 1673
SmoI	CTYRAG	2 cut(s)	1431, 1673
SspMI	CTAG	1 cut(s)	1759
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	1386
StyI	CCWWGG	2 cut(s)	344, 1164
TaaI	ACNGT	3 cut(s)	1143, 1579, 1741
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	3 cut(s)	464, 474, 1221
TaqII	GACCGA	1 cut(s)	1481
TatI	WGTACW	2 cut(s)	804, 1732
Tru1I	TTAA	3 cut(s)	57, 363, 821
Tru9I	TTAA	3 cut(s)	57, 363, 821
TscAI	CASTG	3 cut(s)	1215, 1384, 1453
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	5 cut(s)	479, 766, 769, 1019, 1261
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	3 cut(s)	278, 684, 1638
TspRI	CASTG	3 cut(s)	1215, 1384, 1453
XapI	RAATTY	1 cut(s)	1370
XspI	CTAG	1 cut(s)	1759
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.