Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

11260646 .. 11261663

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAGCACGGTGATAATGGGAGACCGAGTAAAAAGCCGAAGTTCTCTTATAACGACAATGGCGAAAAAGGAGACTACAACAAATTAGAATGGAAGCCTGACCACCCCAATCGGCCTCTATGGGTTTGTCCCAATGGTCGAGTCATCTTTGAAGCTAGCTCGGTTTTTTACGAACACACTCAAGATTTTCTTATTGCCATAGCCGAACCAGTTCGCAGGGCAGAGCTGATCCACGAGTATAACTTGACCCCGGAGTCCTTGTTTAAGGCTGCCTCGACTGGTCTCGAAACAGAAACCATTATTTCTGTTTTGAATAAGCTCTCGAAGAACAACCTCGCGAAACAACTCATTGATTTCATTCAGTCTTCTACTGCTAACTACGGCAAAGCTAAGCTGGTCCTCAAGAACAATCGCTACTTTGTGGAATCCACATTTCCGGTGGTTCAAGATGTGATGAAACGTTGCTCGCAAGATGGTTTGAACTATCCCATGGTGGAGGAGTACAACTACAGAAACGATAGTGTAAACCCTAACGTCGGGAAGTCTCTGGTTGGTGTTTCTGCAGCATCCACAATAGGAAAGAGCTGCCTTTGTTTGTCAACGAATGGTGTTTCAGTTGATCAATGGGTTCATCAGTTCAAGTTGTGGTCAACCATCCGAGACCAACAGATTTGTCGTTTCAAATCTGACTGTAAAGAAGAAGCTGAAAAGATGTTAATCCGCCGCAAGAACAACGCTGCAGGAGTGGTGTTAGTGACTACATATAGCATGCTTGGTTGTGGTGGCAATAGGTCCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

267

Amino Acids

30.03

Weight (kDa)

8.73

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	40 - 151	6.3e-27	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	51
AasI	GACNNNNNNGTC	1 cut(s)	253
AccII	CGCG	1 cut(s)	338
AciI	CCGC	2 cut(s)	721, 724
AclI	AACGTT	1 cut(s)	460
AclWI	GGATC	1 cut(s)	223
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	6 cut(s)	152, 313, 446, 481, 640, 682
AluBI	AGCT	8 cut(s)	155, 159, 226, 319, 389, 394, 585, 704
AluI	AGCT	8 cut(s)	155, 159, 226, 319, 389, 394, 585, 704
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	5 cut(s)	16, 66, 287, 549, 654
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	269, 563, 585, 737
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	397, 792
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	397, 792
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	256, 572, 575, 724
BccI	CCATC	2 cut(s)	467, 662
BceAI	ACGGC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	5 cut(s)	16, 66, 287, 549, 654
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	3 cut(s)	508, 561, 738
BisI	GCNGC	5 cut(s)	270, 564, 586, 724, 738
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	5 cut(s)	271, 565, 587, 725, 739
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	2 cut(s)	397, 792
BmgT120I	GGNCC	2 cut(s)	397, 792
BmiI	GGNNCC	1 cut(s)	794
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	575
BmtI	GCTAGC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	165, 386
BpuMI	CCSGG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	716
BsaI	GGTCTC	3 cut(s)	16, 287, 654
BsaJI	CCNNGG	2 cut(s)	249, 489
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	4 cut(s)	13, 43, 245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	209, 283
Bse8I	GATNNNNATC	1 cut(s)	716
BseDI	CCNNGG	2 cut(s)	249, 489
BseGI	GGATG	2 cut(s)	566, 654
BseJI	GATNNNNATC	1 cut(s)	716
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseNI	ACTGG	2 cut(s)	209, 283
BseRI	GAGGAG	1 cut(s)	512
BseXI	GCAGC	4 cut(s)	256, 572, 575, 724
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	251, 437
BslFI	GGGAC	2 cut(s)	114, 778
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	5 cut(s)	16, 66, 287, 549, 654
BsmFI	GGGAC	2 cut(s)	114, 778
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	3 cut(s)	16, 287, 654
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	228, 619
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	489
Bsp68I	TCGCGA	1 cut(s)	338
BspACI	CCGC	2 cut(s)	721, 724
BspANI	GGCC	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	794
BspMAI	CTGCAG	2 cut(s)	565, 742
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	223
BspTNI	GGTCTC	3 cut(s)	16, 287, 654
BsrI	ACTGG	2 cut(s)	209, 283
BssECI	CCNNGG	2 cut(s)	249, 489
BssMI	GATC	2 cut(s)	228, 619
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	11, 692
BstC8I	GCNNGC	3 cut(s)	157, 467, 770
BstDEI	CTNAG	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	489
BstF5I	GGATG	2 cut(s)	566, 654
BstFNI	CGCG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	231, 622
BstMAI	GTCTC	5 cut(s)	16, 66, 287, 549, 654
BstMBI	GATC	2 cut(s)	228, 619
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	3 cut(s)	508, 561, 738
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	256, 572, 575, 724
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	489
BtsCI	GGATG	2 cut(s)	566, 654
BtuMI	TCGCGA	1 cut(s)	338
Cac8I	GCNNGC	3 cut(s)	157, 467, 770
Cfr13I	GGNCC	2 cut(s)	397, 792
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	2 cut(s)	490, 769
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	230, 621
DpnII	GATC	2 cut(s)	228, 619
DrdI	GACNNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	489
Eco31I	GGTCTC	3 cut(s)	16, 287, 654
Eco47I	GGWCC	2 cut(s)	397, 792
EcoO109I	RGGNCCY	1 cut(s)	792
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	2 cut(s)	493, 772
FaiI	YATR	8 cut(s)	51, 121, 200, 240, 491, 763, 765, 770
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	2 cut(s)	114, 778
FatI	CATG	2 cut(s)	489, 768
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	5 cut(s)	270, 564, 586, 724, 738
FokI	GGATG	2 cut(s)	553, 641
Fsp4HI	GCNGC	5 cut(s)	270, 564, 586, 724, 738
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	5 cut(s)	270, 564, 586, 724, 738
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	2 cut(s)	251, 437
Hin1II	CATG	2 cut(s)	493, 772
HincII	GTYRAC	2 cut(s)	600, 651
HindII	GTYRAC	2 cut(s)	600, 651
HinfI	GANTC	3 cut(s)	141, 254, 425
HpaII	CCGG	2 cut(s)	251, 437
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	526, 600, 651
Hpy188I	TCNGA	2 cut(s)	659, 688
Hpy188III	TCNNGA	7 cut(s)	182, 284, 322, 337, 403, 446, 538
Hpy8I	GTNNAC	3 cut(s)	526, 600, 651
Hpy99I	CGWCG	1 cut(s)	539
HpyCH4III	ACNGT	2 cut(s)	11, 692
HpyCH4IV	ACGT	2 cut(s)	460, 534
HpyCH4V	TGCA	2 cut(s)	563, 740
HpyF3I	CTNAG	1 cut(s)	390
HpySE526I	ACGT	2 cut(s)	460, 534
Hsp92II	CATG	2 cut(s)	493, 772
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	2 cut(s)	228, 619
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	111, 202, 222, 264, 264, 380, 450, 533, 726
Lsp1109I	GCAGC	4 cut(s)	256, 572, 575, 724
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	460, 534
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	230, 621
MboI	GATC	2 cut(s)	228, 619
MboII	GAAGA	3 cut(s)	337, 357, 710
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	150, 263
MnlI	CCTC	5 cut(s)	126, 283, 344, 410, 490
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	264, 716
MspI	CCGG	2 cut(s)	251, 437
MspR9I	CCNGG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	338
NciI	CCSGG	1 cut(s)	251
NcoI	CCATGG	1 cut(s)	489
NdeII	GATC	2 cut(s)	228, 619
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	493, 772
NlaIV	GGNNCC	1 cut(s)	794
NmuCI	GTSAC	1 cut(s)	754
NruI	TCGCGA	1 cut(s)	338
NspI	RCATGY	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	5 cut(s)	271, 565, 587, 725, 739
PleI	GAGTC	2 cut(s)	149, 262
PpsI	GAGTC	2 cut(s)	149, 262
PpuMI	RGGWCCY	1 cut(s)	792
PsiI	TTATAA	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	792
PspN4I	GGNNCC	1 cut(s)	794
PspPI	GGNCC	2 cut(s)	397, 792
PspPPI	RGGWCCY	1 cut(s)	792
PsrI	GAACNNNNNNTAC	2 cut(s)	398, 430
PstI	CTGCAG	2 cut(s)	565, 742
RruI	TCGCGA	1 cut(s)	338
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	264, 716
SatI	GCNGC	5 cut(s)	270, 564, 586, 724, 738
Sau3AI	GATC	2 cut(s)	228, 619
Sau96I	GGNCC	2 cut(s)	397, 792
SchI	GAGTC	2 cut(s)	150, 263
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	575
SfcI	CTRYAG	3 cut(s)	508, 561, 738
SinI	GGWCC	2 cut(s)	397, 792
SmlI	CTYRAG	2 cut(s)	180, 401
SmoI	CTYRAG	2 cut(s)	180, 401
SphI	GCATGC	1 cut(s)	772
Sse9I	AATT	1 cut(s)	83
SsiI	CCGC	2 cut(s)	721, 724
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	11, 692
TaiI	ACGT	2 cut(s)	463, 537
TaqI	TCGA	4 cut(s)	139, 275, 285, 323
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	1 cut(s)	726
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	264, 716
Tru9I	TTAA	2 cut(s)	264, 716
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	4 cut(s)	269, 563, 585, 737
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	3 cut(s)	346, 470, 620
VpaK11BI	GGWCC	2 cut(s)	397, 792
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.