Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002322.1

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

314329 .. 316687

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002322.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atgtatggcatacatcgacgtatactagaattttccaataagtttagggcatgcgagtttcttatacggtttcatgaagagcaccgtggtgataaaattattgtatttgccgataatctatttgcacttacagagtatgcaatgaaacttcggaaacctatgatctatggtgctaccagccatgctgagaggacaaaaattctacaagctttcaaaacaagtcgggacgtaaacaccgtattcctgtctaaggtgggtgataattccatagacattcctgaggcaaatgtgattattcagatctcatcacatgctggttcaagacgtcaagaagcacagcgtcttggacgtattttgagggctaagggtagacctcaggatcggattgcaggaggtaaagaggagtataatgcgttcttttattctcttgtgtcgactgatactcaggagatgtacttttcaactaaacgccagcagtttttgattgatcaaggttatagttttaaggttattacaagcttgccccctcctgaatcaggatctgatttgagctatcaccgtcttgatgaccaactggcactactttcaaaggtgttgagtgttggtgatgataaagttggcttagagacactagaagaagaccctgatgagattgcccttcagaaagcacgtcgctcaacaggatccatgactttgatgtcaggcgccaaggggatggtttacatggaatatagtactgaaacgcagaaacacaagcatggcaaagcacagattaagagtactaagcccagggatccggcgaagagacattatttgtttaaacaacgccgtggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

278

Amino Acids

31.82

Weight (kDa)

9.58

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	697
AatII	GACGTC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	704
AccI	GTMKAC	3 cut(s)	22, 370, 434
AclWI	GGATC	6 cut(s)	387, 547, 678, 691, 788, 801
AcsI	RAATTY	2 cut(s)	29, 198
AcuI	CTGAAG	1 cut(s)	644
AcyI	GRCGYC	2 cut(s)	325, 705
AfaI	GTAC	3 cut(s)	455, 736, 781
AfiI	CCNNNNNNNGG	2 cut(s)	250, 536
AgsI	TTSAA	4 cut(s)	214, 321, 462, 588
AjiI	CACGTC	1 cut(s)	671
AjnI	CCWGG	1 cut(s)	788
AleI	CACNNNNGTG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	209, 519, 552
AluI	AGCT	3 cut(s)	209, 519, 552
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	620, 799
AlwI	GGATC	6 cut(s)	387, 547, 678, 691, 788, 801
AlwNI	CAGNNNCTG	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	29, 198
AspLEI	GCGC	1 cut(s)	707
AsuHPI	GGTGA	4 cut(s)	101, 269, 548, 617
AxyI	CCTNAGG	2 cut(s)	279, 375
BamHI	GGATCC	2 cut(s)	683, 793
BanI	GGYRCC	1 cut(s)	704
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	1 cut(s)	709
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	1 cut(s)	790
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	2 cut(s)	620, 799
BfaI	CTAG	2 cut(s)	26, 632
BfoI	RGCGCY	1 cut(s)	708
BglII	AGATCT	1 cut(s)	300
BmcAI	AGTACT	2 cut(s)	736, 781
Bme1390I	CCNGG	1 cut(s)	790
BmgBI	CACGTC	1 cut(s)	671
BmiI	GGNNCC	3 cut(s)	685, 706, 795
BmrFI	CCNGG	1 cut(s)	790
BpiI	GAAGAC	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	363
BsaHI	GRCGYC	2 cut(s)	325, 705
BsaJI	CCNNGG	5 cut(s)	85, 708, 788, 789, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 536
Bse1I	ACTGG	1 cut(s)	579
Bse21I	CCTNAGG	2 cut(s)	279, 375
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	1 cut(s)	790
BseDI	CCNNGG	5 cut(s)	85, 708, 788, 789, 829
BseGI	GGATG	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	250, 536
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	4 cut(s)	177, 270, 389, 458
BseNI	ACTGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	704
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	797
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	250, 536
BsmAI	GTCTC	2 cut(s)	620, 799
BsmFI	GGGAC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
BspCNI	CTCAG	4 cut(s)	178, 271, 388, 457
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	685, 706, 795
BspPI	GGATC	6 cut(s)	387, 547, 678, 691, 788, 801
BspQI	GCTCTTC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	5 cut(s)	85, 708, 788, 789, 829
BssMI	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
BssNAI	GTATAC	1 cut(s)	23
BssNI	GRCGYC	2 cut(s)	325, 705
BssT1I	CCWWGG	1 cut(s)	708
Bst1107I	GTATAC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	790
Bst4CI	ACNGT	4 cut(s)	69, 86, 238, 560
Bst6I	CTCTTC	2 cut(s)	72, 797
BstACI	GRCGYC	2 cut(s)	325, 705
BstC8I	GCNNGC	3 cut(s)	52, 473, 521
BstDEI	CTNAG	8 cut(s)	186, 249, 279, 363, 375, 444, 622, 783
BstDSI	CCRYGG	2 cut(s)	85, 829
BstENI	CCTNNNNNAGG	2 cut(s)	248, 534
BstF5I	GGATG	1 cut(s)	720
BstH2I	RGCGCY	1 cut(s)	708
BstHHI	GCGC	1 cut(s)	707
BstKTI	GATC	7 cut(s)	165, 303, 382, 490, 542, 686, 796
BstMAI	GTCTC	2 cut(s)	620, 799
BstMBI	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
BstNI	CCWGG	1 cut(s)	790
BstNSI	RCATGY	2 cut(s)	54, 314
BstSCI	CCNGG	1 cut(s)	788
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	4 cut(s)	300, 539, 683, 793
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	4 cut(s)	300, 539, 683, 793
BstZ17I	GTATAC	1 cut(s)	23
Bsu36I	CCTNAGG	2 cut(s)	279, 375
BtgI	CCRYGG	2 cut(s)	85, 829
BtrI	CACGTC	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	720
Cac8I	GCNNGC	3 cut(s)	52, 473, 521
CaiI	CAGNNNCTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	707
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	3 cut(s)	454, 735, 780
CviAII	CATG	7 cut(s)	51, 74, 182, 311, 688, 724, 758
CviJI	RGCY	8 cut(s)	180, 209, 362, 519, 552, 621, 787, 834
CviKI_1	RGCY	8 cut(s)	180, 209, 362, 519, 552, 621, 787, 834
CviQI	GTAC	3 cut(s)	454, 735, 780
DdeI	CTNAG	8 cut(s)	186, 249, 279, 363, 375, 444, 622, 783
DinI	GGCGCC	1 cut(s)	706
DpnI	GATC	7 cut(s)	164, 302, 381, 489, 541, 685, 795
DpnII	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
DraI	TTTAAA	1 cut(s)	820
DrdI	GACNNNNNNGTC	1 cut(s)	697
DseDI	GACNNNNNNGTC	1 cut(s)	697
Eam1104I	CTCTTC	2 cut(s)	72, 797
EarI	CTCTTC	2 cut(s)	72, 797
Eco130I	CCWWGG	1 cut(s)	708
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	2 cut(s)	279, 375
EcoNI	CCTNNNNNAGG	2 cut(s)	248, 534
EcoRII	CCWGG	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	708
EgeI	GGCGCC	1 cut(s)	706
EheI	GGCGCC	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	7 cut(s)	54, 77, 185, 314, 691, 727, 761
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	7 cut(s)	50, 73, 181, 310, 687, 723, 757
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	3 cut(s)	22, 370, 434
FokI	GGATG	1 cut(s)	727
FspBI	CTAG	2 cut(s)	26, 632
GlaI	GCGC	1 cut(s)	706
HaeII	RGCGCY	1 cut(s)	708
HapII	CCGG	1 cut(s)	797
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	1 cut(s)	707
Hin1I	GRCGYC	2 cut(s)	325, 705
Hin1II	CATG	7 cut(s)	54, 77, 185, 314, 691, 727, 761
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	2 cut(s)	207, 517
HinfI	GANTC	1 cut(s)	533
HpaII	CCGG	1 cut(s)	797
HphI	GGTGA	4 cut(s)	101, 269, 548, 617
Hpy166II	GTNNAC	5 cut(s)	23, 232, 371, 435, 721
Hpy188I	TCNGA	5 cut(s)	153, 300, 384, 544, 663
Hpy8I	GTNNAC	5 cut(s)	23, 232, 371, 435, 721
Hpy99I	CGWCG	2 cut(s)	21, 675
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	4 cut(s)	69, 86, 238, 560
HpyCH4IV	ACGT	5 cut(s)	19, 228, 325, 349, 670
HpyCH4V	TGCA	3 cut(s)	125, 140, 389
HpyF3I	CTNAG	8 cut(s)	186, 249, 279, 363, 375, 444, 622, 783
HpySE526I	ACGT	5 cut(s)	19, 228, 325, 349, 670
Hsp92I	GRCGYC	2 cut(s)	325, 705
Hsp92II	CATG	7 cut(s)	54, 77, 185, 314, 691, 727, 761
HspAI	GCGC	1 cut(s)	705
KasI	GGCGCC	1 cut(s)	704
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
LguI	GCTCTTC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	26, 632
MaeII	ACGT	5 cut(s)	19, 228, 325, 349, 670
MalI	GATC	7 cut(s)	164, 302, 381, 489, 541, 685, 795
MboI	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
MboII	GAAGA	4 cut(s)	89, 647, 650, 814
MflI	RGATCY	4 cut(s)	300, 539, 683, 793
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	4 cut(s)	29, 96, 198, 262
Mly113I	GGCGCC	1 cut(s)	705
MnlI	CCTC	7 cut(s)	183, 274, 351, 384, 386, 394, 537
MseI	TTAA	3 cut(s)	504, 774, 819
MslI	CAYNNNNRTG	2 cut(s)	87, 756
MspI	CCGG	1 cut(s)	797
MspR9I	CCNGG	1 cut(s)	790
MssI	GTTTAAAC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	790
NarI	GGCGCC	1 cut(s)	705
NdeII	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
NlaIII	CATG	7 cut(s)	54, 77, 185, 314, 691, 727, 761
NlaIV	GGNNCC	3 cut(s)	685, 706, 795
NspI	RCATGY	2 cut(s)	54, 314
OliI	CACNNNNGTG	1 cut(s)	87
PaeI	GCATGC	1 cut(s)	54
PagI	TCATGA	1 cut(s)	73
PasI	CCCWGGG	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	533
PluTI	GGCGCC	1 cut(s)	708
PmeI	GTTTAAAC	1 cut(s)	820
Psp6I	CCWGG	1 cut(s)	788
PspGI	CCWGG	1 cut(s)	788
PspN4I	GGNNCC	3 cut(s)	685, 706, 795
PsrI	GAACNNNNNNTAC	2 cut(s)	398, 430
PstNI	CAGNNNCTG	1 cut(s)	542
PsuI	RGATCY	4 cut(s)	300, 539, 683, 793
RsaI	GTAC	3 cut(s)	455, 736, 781
RsaNI	GTAC	3 cut(s)	454, 735, 780
RseI	CAYNNNNRTG	2 cut(s)	87, 756
SalI	GTCGAC	1 cut(s)	433
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	504, 774, 819
Sau3AI	GATC	7 cut(s)	162, 300, 379, 487, 539, 683, 793
ScaI	AGTACT	2 cut(s)	736, 781
ScrFI	CCNGG	1 cut(s)	790
SduI	GDGCHC	1 cut(s)	84
SfoI	GGCGCC	1 cut(s)	706
SmiMI	CAYNNNNRTG	2 cut(s)	87, 756
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	4 cut(s)	29, 96, 198, 262
SspDI	GGCGCC	1 cut(s)	704
SspMI	CTAG	2 cut(s)	26, 632
StyD4I	CCNGG	1 cut(s)	788
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	4 cut(s)	69, 86, 238, 560
TaiI	ACGT	5 cut(s)	22, 231, 328, 352, 673
TaqI	TCGA	2 cut(s)	16, 434
TasI	AATT	4 cut(s)	29, 96, 198, 262
TatI	WGTACW	3 cut(s)	453, 734, 779
TfiI	GAWTC	1 cut(s)	533
Tru1I	TTAA	3 cut(s)	504, 774, 819
Tru9I	TTAA	3 cut(s)	504, 774, 819
TspDTI	ATGAA	3 cut(s)	62, 90, 158
XagI	CCTNNNNNAGG	2 cut(s)	248, 534
XapI	RAATTY	2 cut(s)	29, 198
XceI	RCATGY	2 cut(s)	54, 314
XmiI	GTMKAC	3 cut(s)	22, 370, 434
XspI	CTAG	2 cut(s)	26, 632
ZraI	GACGTC	1 cut(s)	326
ZrmI	AGTACT	2 cut(s)	736, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.