Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001033

Physical Location & Seq

Genomic Coordinates Reverse (-)

21521776 .. 21523760

Gene Structure 1985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGCGCACGGTGATGATGAGAGACCGAGTCAAAAGCCCAAATTCTCTAATAACGATGATGGCAAAGCAACAGACTATAGGAAATTAGAATGGAAGCCTGAACACCCCAATCGGCCTCTGTGGATTTGTCCCGATGGTCGAGTACTCCTGGAAACTAACTCGGCTTTCTACGAACACGCTCAGGATTTTCTCATTACCATTGCCGAACCAGTTCGCAGGGCAGAGTTGATCCACGAGTATAACTTGACCCGGAGTCATTGTTCTTCTACTGATAACAGCGACAAAGCGAAGCTGGTCCTCAAGAACAATCAGTACTTTGTGGAATCCACATTCCCGGAGGGACTGAACACATTGCTTGAGGATAAACTTATATCTGAAGCAAAAATTAGTAGTATAACAAATAATGGCAAAGAATTCGAAATTGATCATAACAAGGTTGAAGACATCATGAAACGTTACTCGCAAGATGGTTTGAACTATCCCGTGGTGGAGGAGTACGACTATAGAAACGATAATGTAAACCCCAATGTTGGTATGGAACTAAAGCCCCAAGCACGCGTGACGATACGACCATATCAGCTTAAGAGCTTGAGCACAATGTTTGGGAATGGTAGAGCGAGATCTGCCTCCACAATAGGAAAGAGCTGCCTTTGTTTAGCAACGAATGGTGTTTCAGTTGATCAGTGGGTCTATCAGTTCAAGTTGTGGTCAACCATTCGAGATGAACAGCTTTGTCGTTTCAAATCTTACTGTAAAGAAGAAGCTGCAGAGATGTTAATCCGCCGCAAAAGCAATGCTGCTGGGGTGGTGGTTGTGACTACATATAGCATGCTTGGCTGTGGTGGCAATAGGTCCCAACAGTCTACAAACATTATTGAGGAAATAAAAAATAGAAAATGGGGGTTGATTCTCATGGATGAGGTTCATGTAACTCCTGCTAAATCGTTTCAAAATGTCATCCGAATCACCAAATCACACTGCAAGCTTGGCCTCACGACGACGCTCTTGAGAGAAGATGACAAGATATCAGATCTCAACTTCCTCATTGGACCCAAATTATATGAAGCAAACTGGTTGGATTTGGCGAAACGAGGATACATTGCAAATGTGCTCTGTGCTGAAGTAAGGTGTCAGATGACAAAGGAGTTCTTTGCCGAGTATAAGAAAGAAAACTCCTACAAAAGAAAGCAAGCACTTTATTTGATGAATCCAAACAAGTTTAGGATATGCGAGTATCTTATACAGTTTCATGAGCAGCAGCGCCGTGGTGATAAGATCATAGTCTTTTCCGACAACCTCTTCACCCTCACTGAATATGCCACCAAGCTCCGAAAACCTATGTTTTATGGTGCCACCACGCAGGCTGAGACGACAAAAGTTCTAGAAGAGTTCAAAACAAACCCGGATGTAAACACCGTATTCATGTCTAAGGTGGGTGATAACTCCTTGGACATTCCCGAGGCAAATGTGATCATTGAGATTTCATGGCATGGCGGTTCGAGACGACAAGAAGCGCAGCGTCTTGGTCGGATTCTAAGGGCCAAGAAAAGTAAAGAGAAGTACAATGCATTCTTCTATTCCCTTGTGTCATCGGATACACGGGAGATGGAATTTGCAGCTAAAAGGCAGCAGTTTTTGGTCGATCAAGGTTATAGTTATAAGATTGTTACAATCTTGCAATTGCCTAATTTTCCTCCACTTGGATCAGGAGCTTTGAGCTATGACAGTCTTCAAGATCAACGCGCACTACTCAAGAAAGTGTTGAGCTTTAATGAGGCTATAGTTGGGGCCGAAGATCCACTAGTAGAAGATGTACATGGCATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0010224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

ERCC3_RAD25_C Helicase_C_3 ResIII

Protein Analysis

609

Amino Acids

69.95

Weight (kDa)

8.41

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C_3	PF13625	40 - 84	1.7e-07	Helicase conserved C-terminal domain
ResIII	PF04851	216 - 335	3.4e-07	Type III restriction enzyme, res subunit
ERCC3_RAD25_C	PF16203	361 - 596	5.8e-103	ERCC3/RAD25/XPB C-terminal helicase
Helicase_C	PF00271	410 - 514	1.8e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41360 AT5G41360 AT5G41370
fragaria_vesca	FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g02840 FvH4_5g19420 FvH4_5g19430 FvH4_7g08220 FvH4_7g08220
malus_domestica	MD06G1087900.v1.1
prunus_persica	Prupe.5G104000_v2.0.a1
pyrus_communis	pycom06g08400
rosa_chinensis	RchiOBHm_Chr1g0341611 RchiOBHm_Chr1g0341621 RchiOBHm_Chr1g0341861 RchiOBHm_Chr7g0197061 RchiOBHm_Chr7g0203931
rosa_laevigata	RLG00000003497 RLG00000003962 RLG00000029105 RLG00000029132
rosa_multiflora	Rmu_co8328521.1_g000001 Rmu_co8329503.1_g000001 Rmu_sc0002302.1_g000034 Rmu_sc0002322.1_g000070 Rmu_sc0003411.1_g000004 Rmu_sc0013871.1_g000001 Rmu_sc0032022.1_g000001
rosa_roxburghii	Rroxscaffold_3G00258690 Rroxscaffold_4G00312270 Rroxscaffold_4G00312590
rosa_rugosa	Rorug01G0154800.1 Rorug07G0037400 Rorug07G0079500
rosa_samantha	Rh1AG168500 Rh1AG170500 Rh1BG136800 Rh1BG138300 Rh1BG138400 Rh1CG156100 Rh1CG158700 Rh1DG170300 Rh1DG170600 Rh1DG170700 Rh7AG162300 Rh7AG209400 Rh7AG209500 Rh7BG164400 Rh7BG208200 Rh7BG208300 Rh7CG170500 Rh7CG221900 Rh7DG163800 Rh7DG216500
rosa_wichuraiana	Rw1G014160 Rw1G014180 Rw7G014170 Rw7G018250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1659
AccB1I	GGYRCC	1 cut(s)	1349
AccI	GTMKAC	1 cut(s)	863
AccII	CGCG	2 cut(s)	558, 1743
AciI	CCGC	3 cut(s)	781, 784, 1494
AclI	AACGTT	1 cut(s)	454
AclWI	GGATC	3 cut(s)	223, 1711, 1790
AcsI	RAATTY	3 cut(s)	41, 413, 1610
AcuI	CTGAAG	2 cut(s)	396, 1140
AfaI	GTAC	5 cut(s)	144, 314, 497, 1562, 1815
AfiI	CCNNNNNNNGG	2 cut(s)	530, 1700
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	7 cut(s)	440, 475, 700, 742, 950, 1393, 1733
AhdI	GACNNNNNGTC	1 cut(s)	252
AhlI	ACTAGT	1 cut(s)	1801
AjnI	CCWGG	1 cut(s)	147
AloI	GAACNNNNNNTCC	2 cut(s)	244, 276
Alw21I	GWGCWC	2 cut(s)	596, 1113
Alw26I	GTCTC	3 cut(s)	16, 1361, 1495
AlwI	GGATC	3 cut(s)	223, 1711, 1790
Ama87I	CYCGRG	1 cut(s)	1457
AoxI	GGCC	4 cut(s)	113, 988, 1539, 1788
ApeKI	GCWGC	8 cut(s)	645, 764, 797, 1255, 1258, 1516, 1616, 1627
ApoI	RAATTY	3 cut(s)	41, 413, 1610
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	4 cut(s)	7, 1263, 1516, 1745
AspS9I	GGNCC	5 cut(s)	295, 852, 1049, 1539, 1788
AsuC2I	CCSGG	3 cut(s)	250, 335, 1403
AsuHPI	GGTGA	5 cut(s)	23, 958, 1280, 1294, 1448
AsuII	TTCGAA	1 cut(s)	417
AvaI	CYCGRG	1 cut(s)	1457
AvaII	GGWCC	3 cut(s)	295, 852, 1049
BanI	GGYRCC	1 cut(s)	1349
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	447, 1721
Bbv12I	GWGCWC	2 cut(s)	596, 1113
BbvI	GCAGC	8 cut(s)	632, 751, 784, 1267, 1270, 1528, 1628, 1639
BccI	CCATC	4 cut(s)	53, 128, 461, 1600
BceAI	ACGGC	1 cut(s)	1248
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	2 cut(s)	1088, 1588
BclI	TGATCA	3 cut(s)	424, 679, 1470
BcnI	CCSGG	3 cut(s)	250, 335, 1403
BcoDI	GTCTC	3 cut(s)	16, 1361, 1495
BcuI	ACTAGT	1 cut(s)	1801
BfaI	CTAG	2 cut(s)	1382, 1802
BfmI	CTRYAG	4 cut(s)	76, 502, 765, 1779
BfoI	RGCGCY	1 cut(s)	1264
BfrI	CTTAAG	1 cut(s)	581
BfuI	GTATCC	2 cut(s)	1088, 1588
BglII	AGATCT	2 cut(s)	620, 1030
BisI	GCNGC	9 cut(s)	646, 765, 784, 798, 1256, 1259, 1517, 1617, 1628
BlsI	GCNGC	9 cut(s)	647, 766, 785, 799, 1257, 1260, 1518, 1618, 1629
BmcAI	AGTACT	2 cut(s)	144, 314
Bme1390I	CCNGG	4 cut(s)	149, 250, 335, 1403
Bme18I	GGWCC	3 cut(s)	295, 852, 1049
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	1457
BmgT120I	GGNCC	5 cut(s)	295, 852, 1049, 1539, 1788
BmiI	GGNNCC	4 cut(s)	854, 1051, 1351, 1789
BmrFI	CCNGG	4 cut(s)	149, 250, 335, 1403
BpiI	GAAGAC	2 cut(s)	447, 1721
Bpu10I	CCTNAGC	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	5 cut(s)	284, 377, 610, 1027, 1736
BpuMI	CCSGG	3 cut(s)	250, 335, 1403
BsaBI	GATNNNNATC	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	4 cut(s)	483, 1264, 1446, 1458
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 1700
Bse1I	ACTGG	2 cut(s)	209, 1076
Bse3DI	GCAATG	4 cut(s)	198, 350, 799, 1098
Bse8I	GATNNNNATC	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	4 cut(s)	483, 1264, 1446, 1458
BseGI	GGATG	3 cut(s)	922, 957, 1411
BseJI	GATNNNNATC	1 cut(s)	776
BseLI	CCNNNNNNNGG	2 cut(s)	530, 1700
BseMI	GCAATG	4 cut(s)	198, 350, 799, 1098
BseMII	CTCAG	2 cut(s)	194, 1356
BseNI	ACTGG	2 cut(s)	209, 1076
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	8 cut(s)	632, 751, 784, 1267, 1270, 1528, 1628, 1639
BseYI	CCCAGC	1 cut(s)	800
Bsh1236I	CGCG	2 cut(s)	558, 1743
BshFI	GGCC	4 cut(s)	115, 990, 1541, 1790
BshNI	GGYRCC	1 cut(s)	1349
BsiHKAI	GWGCWC	2 cut(s)	596, 1113
BsiHKCI	CYCGRG	1 cut(s)	1457
BsiSI	CCGG	3 cut(s)	250, 335, 1403
BslFI	GGGAC	3 cut(s)	114, 354, 838
BslI	CCNNNNNNNGG	2 cut(s)	530, 1700
BsmAI	GTCTC	3 cut(s)	16, 1361, 1495
BsmBI	CGTCTC	2 cut(s)	1361, 1495
BsmFI	GGGAC	3 cut(s)	114, 354, 838
BsmI	GAATGC	1 cut(s)	1568
BsnI	GGCC	4 cut(s)	115, 990, 1541, 1790
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	1457
Bsp119I	TTCGAA	1 cut(s)	417
Bsp1286I	GDGCHC	2 cut(s)	596, 1113
Bsp1407I	TGTACA	1 cut(s)	1813
BspACI	CCGC	3 cut(s)	781, 784, 1494
BspANI	GGCC	4 cut(s)	115, 990, 1541, 1790
BspCNI	CTCAG	2 cut(s)	193, 1357
BspFNI	CGCG	2 cut(s)	558, 1743
BspHI	TCATGA	2 cut(s)	447, 1249
BspLI	GGNNCC	4 cut(s)	854, 1051, 1351, 1789
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	3 cut(s)	223, 1711, 1790
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	1349
BspTI	CTTAAG	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	4 cut(s)	198, 350, 799, 1098
BsrGI	TGTACA	1 cut(s)	1813
BsrI	ACTGG	2 cut(s)	209, 1076
BssECI	CCNNGG	4 cut(s)	483, 1264, 1446, 1458
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	1 cut(s)	1446
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	6 cut(s)	11, 752, 861, 1245, 1417, 1727
Bst6I	CTCTTC	2 cut(s)	1304, 1380
BstAFI	CTTAAG	1 cut(s)	581
BstAUI	TGTACA	1 cut(s)	1813
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	6 cut(s)	556, 830, 983, 1191, 1362, 1823
BstDEI	CTNAG	4 cut(s)	180, 1365, 1428, 1535
BstDSI	CCRYGG	2 cut(s)	483, 1264
BstF5I	GGATG	3 cut(s)	922, 957, 1411
BstFNI	CGCG	2 cut(s)	558, 1743
BstH2I	RGCGCY	1 cut(s)	1264
BstHHI	GCGC	4 cut(s)	7, 1263, 1516, 1745
BstMAI	GTCTC	3 cut(s)	16, 1361, 1495
BstMWI	GCNNNNNNNGC	5 cut(s)	623, 789, 834, 843, 987
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	832, 1825
BstSCI	CCNGG	4 cut(s)	147, 248, 333, 1401
BstSFI	CTRYAG	4 cut(s)	76, 502, 765, 1779
BstUI	CGCG	2 cut(s)	558, 1743
BstV1I	GCAGC	8 cut(s)	632, 751, 784, 1267, 1270, 1528, 1628, 1639
BstV2I	GAAGAC	2 cut(s)	447, 1721
BstX2I	RGATCY	3 cut(s)	620, 1030, 1795
BstYI	RGATCY	3 cut(s)	620, 1030, 1795
BsuI	GTATCC	2 cut(s)	1088, 1588
BsuRI	GGCC	4 cut(s)	115, 990, 1541, 1790
BtgI	CCRYGG	2 cut(s)	483, 1264
BtsCI	GGATG	3 cut(s)	922, 957, 1411
BtsI	GCAGTG	1 cut(s)	976
BtsIMutI	CAGTG	3 cut(s)	689, 976, 1308
Cac8I	GCNNGC	6 cut(s)	556, 830, 983, 1191, 1362, 1823
CciI	TCATGA	2 cut(s)	447, 1249
CfoI	GCGC	4 cut(s)	7, 1263, 1516, 1745
Cfr13I	GGNCC	5 cut(s)	295, 852, 1049, 1539, 1788
CseI	GACGC	2 cut(s)	1009, 1508
Csp6I	GTAC	5 cut(s)	143, 313, 496, 1561, 1814
CviQI	GTAC	5 cut(s)	143, 313, 496, 1561, 1814
DdeI	CTNAG	4 cut(s)	180, 1365, 1428, 1535
DriI	GACNNNNNGTC	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	1304, 1380
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EarI	CTCTTC	2 cut(s)	1304, 1380
EciI	GGCGGA	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	1446
Eco31I	GGTCTC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	1026
Eco47I	GGWCC	3 cut(s)	295, 852, 1049
Eco57I	CTGAAG	2 cut(s)	396, 1140
Eco88I	CYCGRG	1 cut(s)	1457
EcoO109I	RGGNCCY	1 cut(s)	852
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	1026
EcoT14I	CCWWGG	1 cut(s)	1446
EcoT22I	ATGCAT	2 cut(s)	1570, 1827
ErhI	CCWWGG	1 cut(s)	1446
Esp3I	CGTCTC	2 cut(s)	1361, 1495
FalI	AAGNNNNNCTT	2 cut(s)	1133, 1165
FaqI	GGGAC	3 cut(s)	114, 354, 838
FbaI	TGATCA	3 cut(s)	424, 679, 1470
FblI	GTMKAC	1 cut(s)	863
Fnu4HI	GCNGC	9 cut(s)	646, 765, 784, 798, 1256, 1259, 1517, 1617, 1628
FokI	GGATG	3 cut(s)	929, 944, 1418
Fsp4HI	GCNGC	9 cut(s)	646, 765, 784, 798, 1256, 1259, 1517, 1617, 1628
FspBI	CTAG	2 cut(s)	1382, 1802
GlaI	GCGC	4 cut(s)	6, 1262, 1515, 1744
GluI	GCNGC	9 cut(s)	646, 765, 784, 798, 1256, 1259, 1517, 1617, 1628
GsaI	CCCAGC	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	1264
HaeIII	GGCC	4 cut(s)	115, 990, 1541, 1790
HapII	CCGG	3 cut(s)	250, 335, 1403
HgaI	GACGC	2 cut(s)	1009, 1508
HhaI	GCGC	4 cut(s)	7, 1263, 1516, 1745
Hin6I	GCGC	4 cut(s)	5, 1261, 1514, 1743
HinP1I	GCGC	4 cut(s)	5, 1261, 1514, 1743
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	7 cut(s)	28, 253, 323, 907, 963, 1207, 1531
HpaII	CCGG	3 cut(s)	250, 335, 1403
HphI	GGTGA	5 cut(s)	23, 958, 1280, 1294, 1448
Hpy166II	GTNNAC	4 cut(s)	520, 711, 864, 1411
Hpy188I	TCNGA	8 cut(s)	376, 962, 1030, 1134, 1291, 1331, 1530, 1594
Hpy8I	GTNNAC	4 cut(s)	520, 711, 864, 1411
Hpy99I	CGWCG	2 cut(s)	1000, 1003
HpyCH4III	ACNGT	6 cut(s)	11, 752, 861, 1245, 1417, 1727
HpyCH4IV	ACGT	1 cut(s)	454
HpyCH4V	TGCA	7 cut(s)	767, 981, 1103, 1568, 1616, 1678, 1825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	623, 789, 834, 843, 987
HpyF3I	CTNAG	4 cut(s)	180, 1365, 1428, 1535
HpySE526I	ACGT	1 cut(s)	454
HspAI	GCGC	4 cut(s)	5, 1261, 1514, 1743
Ksp22I	TGATCA	3 cut(s)	424, 679, 1470
LmnI	GCTCC	2 cut(s)	1332, 1709
Lsp1109I	GCAGC	8 cut(s)	632, 751, 784, 1267, 1270, 1528, 1628, 1639
MaeI	CTAG	2 cut(s)	1382, 1802
MaeII	ACGT	1 cut(s)	454
MaeIII	GTNAC	5 cut(s)	455, 559, 814, 928, 1666
MfeI	CAATTG	1 cut(s)	1679
MflI	RGATCY	3 cut(s)	620, 1030, 1795
MhlI	GDGCHC	2 cut(s)	596, 1113
MluCI	AATT	9 cut(s)	41, 83, 384, 413, 420, 1055, 1610, 1679, 1687
MluI	ACGCGT	1 cut(s)	556
MlyI	GAGTC	2 cut(s)	37, 262
MmeI	TCCRAC	3 cut(s)	1056, 1314, 1508
Mph1103I	ATGCAT	2 cut(s)	1570, 1827
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	3 cut(s)	582, 776, 1770
MslI	CAYNNNNRTG	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	3 cut(s)	250, 335, 1403
MspR9I	CCNGG	4 cut(s)	149, 250, 335, 1403
MunI	CAATTG	1 cut(s)	1679
Mva1269I	GAATGC	1 cut(s)	1568
MvaI	CCWGG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	558, 1743
MwoI	GCNNNNNNNGC	5 cut(s)	623, 789, 834, 843, 987
NciI	CCSGG	3 cut(s)	250, 335, 1403
NlaIV	GGNNCC	4 cut(s)	854, 1051, 1351, 1789
NmeAIII	GCCGAG	2 cut(s)	140, 1180
NmuCI	GTSAC	2 cut(s)	559, 814
NsiI	ATGCAT	2 cut(s)	1570, 1827
NspI	RCATGY	2 cut(s)	832, 1825
NspV	TTCGAA	1 cut(s)	417
PaeI	GCATGC	2 cut(s)	832, 1825
PagI	TCATGA	2 cut(s)	447, 1249
PctI	GAATGC	1 cut(s)	1568
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	5 cut(s)	323, 907, 963, 1207, 1531
PflFI	GACNNNGTC	1 cut(s)	27
PfoI	TCCNGGA	2 cut(s)	147, 333
PkrI	GCNGC	9 cut(s)	647, 766, 785, 799, 1257, 1260, 1518, 1618, 1629
PleI	GAGTC	2 cut(s)	36, 261
PpsI	GAGTC	2 cut(s)	36, 261
PpuMI	RGGWCCY	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	1659
Psp1406I	AACGTT	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	4 cut(s)	854, 1051, 1351, 1789
PspPI	GGNCC	5 cut(s)	295, 852, 1049, 1539, 1788
PspPPI	RGGWCCY	1 cut(s)	852
PsrI	GAACNNNNNNTAC	2 cut(s)	296, 328
PstI	CTGCAG	1 cut(s)	769
PsuI	RGATCY	3 cut(s)	620, 1030, 1795
PsyI	GACNNNGTC	1 cut(s)	27
RsaI	GTAC	5 cut(s)	144, 314, 497, 1562, 1815
RsaNI	GTAC	5 cut(s)	143, 313, 496, 1561, 1814
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	582, 776, 1770
SatI	GCNGC	9 cut(s)	646, 765, 784, 798, 1256, 1259, 1517, 1617, 1628
Sau96I	GGNCC	5 cut(s)	295, 852, 1049, 1539, 1788
ScaI	AGTACT	2 cut(s)	144, 314
SchI	GAGTC	2 cut(s)	37, 262
ScrFI	CCNGG	4 cut(s)	149, 250, 335, 1403
SduI	GDGCHC	2 cut(s)	596, 1113
SfcI	CTRYAG	4 cut(s)	76, 502, 765, 1779
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	3 cut(s)	295, 852, 1049
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	6 cut(s)	299, 356, 581, 589, 1006, 1751
SmoI	CTYRAG	6 cut(s)	299, 356, 581, 589, 1006, 1751
SpeI	ACTAGT	1 cut(s)	1801
SphI	GCATGC	2 cut(s)	832, 1825
Sse9I	AATT	9 cut(s)	41, 83, 384, 413, 420, 1055, 1610, 1679, 1687
SsiI	CCGC	3 cut(s)	781, 784, 1494
SspMI	CTAG	2 cut(s)	1382, 1802
StyD4I	CCNGG	4 cut(s)	147, 248, 333, 1401
StyI	CCWWGG	1 cut(s)	1446
TaaI	ACNGT	6 cut(s)	11, 752, 861, 1245, 1417, 1727
TaiI	ACGT	1 cut(s)	457
TaqI	TCGA	5 cut(s)	139, 417, 718, 1499, 1641
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	9 cut(s)	41, 83, 384, 413, 420, 1055, 1610, 1679, 1687
TatI	WGTACW	4 cut(s)	142, 312, 1560, 1813
TauI	GCSGC	1 cut(s)	786
TfiI	GAWTC	5 cut(s)	323, 907, 963, 1207, 1531
Tru1I	TTAA	3 cut(s)	582, 776, 1770
Tru9I	TTAA	3 cut(s)	582, 776, 1770
TscAI	CASTG	3 cut(s)	689, 983, 1315
TseFI	GTSAC	2 cut(s)	559, 814
TseI	GCWGC	8 cut(s)	645, 764, 797, 1255, 1258, 1516, 1616, 1627
Tsp45I	GTSAC	2 cut(s)	559, 814
TspDTI	ATGAA	8 cut(s)	464, 738, 914, 1077, 1220, 1238, 1411, 1473
TspRI	CASTG	3 cut(s)	689, 983, 1315
Tth111I	GACNNNGTC	1 cut(s)	27
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	3 cut(s)	295, 852, 1049
XapI	RAATTY	3 cut(s)	41, 413, 1610
XbaI	TCTAGA	1 cut(s)	1381
XceI	RCATGY	2 cut(s)	832, 1825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	863
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	2 cut(s)	1382, 1802
ZrmI	AGTACT	2 cut(s)	144, 314
Zsp2I	ATGCAT	2 cut(s)	1570, 1827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.